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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHG426
Library CH
(Link to library)
Clone ID CHG426
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID CHG426P
(Link to Original site)
Representative DNA sequence 
>CHG426 (CHG426Q) /CSM/CH/CHG4-B/CHG426Q.Seq.d/
ATTCAATTTTATTTTTAATNAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTAAA
AATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTACGATATT
CCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAANAATGTCA
TAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGGGC
TTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCATC
CAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAAT
TACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAXXXXXXXXXXTTGTTTTTTAAGAT
GTCCGCCAAATCATGAATGTAGATTTAATGACCAAGGTCATCAATGCTGTGTAAAGGTTC
CCCATGATAGATGTTCATTAAGATGTCCNCATGCCCATGAATGTAAAGTTGATCNCNATG
GTAAAGAATGTTGNGTCAGATCCCATAGACCACCACCACCAGAAGTTTGTTCATTAAGAT
GCCCNCCAAAACATGAATGTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTC
ATTGTGATGAAGTTTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATG
ATGGTTCAAAATGTTGTGTCCGTTCAGAAAGACCACACCCACCACAACATGAANAATGTA
ATAAGAGATGCCCNCCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCG
TTGTTGCCCATAGACCACCACCAAAATGCTCTTTAAGATGTCCNCCAAGACATGAATGTA
GAGTCANCCACTTTGGTGAAGAATGTTGTGTTAAAGTTCNCCACGATAAATGTTCATTGA
GATGTCCNCCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTG
CCCATAGACCACCACCAAAATGNTCATTAAGATGTCCNCCAAAACATGAATGTAGAATCA
ATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACN
TANACTGTGAAAGAAAAGGTTTACATTGTGCCATGAAAACTGTACCAATTGATAAAGAAA
ATTGTTGGAAAAAGTTCCAGTATGTTATTCCACCNATCCAT
sequence update 2002.10.25
Translated Amino Acid sequence 
fnfifnxfklkkkq*ltklkikk**RMLFLKNIGVFFTIFLVSKSYATDCNKITNEEXCH
KSSECIVINYTPCCGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKI
TTPTEYSCSDA---

---CFLRCPPNHECRFNDQGHQCCVKVPHDRCSLRCPHAHECKVDXXGKECXVRSHRPPP
PEVCSLRCPPKHECKFDDHGKKCCVKIHCDEVCDLDCGRGFECKIRHDGSKCCVRSERPH
PPQHEXCNKRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPRHECRVXHFGEECCVKV
XHDKCSLRCPPGHECKVDQHGKECCVVAHRPPPKXSLRCPPKHECRINHFGEECCVKSRN
DCLTCEDXXCERKGLHCAMKTVPIDKENCWKKFQYVIPPIH
Translated Amino Acid sequence (All Frames) 
Frame A:
iqfyf*xiqikkktitn*vknkkiikdvvskkywsifydipcikilcdgl**ny**rxms
*ifgmycyklytmlw*tkmgll*ryi*ylyi*k*ll*kfiq*psc*sik*mlqs*wiy*n
ynsnrvflf*cq---

---lffkmsaks*m*i**prssmlckgsp**mfikmsxcp*m*s*sxw*rmlxqip*ttt
trslfikmpxkt*m*i**sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcpfrktt
pttt*xm**empxrp*m*s*stwkrmlrccp*tttkmlfkmsxkt*m*sxplw*rmlc*s
spr*mfiemsxrp*m*s*stwkrmlrccp*tttkmxikmsxkt*m*nqslw*rmlc*k*k
*lfnl*rxxl*kkrftlchenctn**rkllekvpvcystxp

Frame B:
fnfifnxfklkkkq*ltklkikk**RMLFLKNIGVFFTIFLVSKSYATDCNKITNEEXCH
KSSECIVINYTPCCGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKI
TTPTEYSCSDA---

---CFLRCPPNHECRFNDQGHQCCVKVPHDRCSLRCPHAHECKVDXXGKECXVRSHRPPP
PEVCSLRCPPKHECKFDDHGKKCCVKIHCDEVCDLDCGRGFECKIRHDGSKCCVRSERPH
PPQHEXCNKRCPPGHECKVDQHGKECCVVAHRPPPKCSLRCPPRHECRVXHFGEECCVKV
XHDKCSLRCPPGHECKVDQHGKECCVVAHRPPPKXSLRCPPKHECRINHFGEECCVKSRN
DCLTCEDXXCERKGLHCAMKTVPIDKENCWKKFQYVIPPIH

Frame C:
silflxnsn*kknnn*ls*k*knnkgccf*kileyflryslyqnpmrrivikllmkxnvi
nlrnvll*iihhvvvnknglalkvhlilvhmkivvieihpitkllkyqinasilmdllkl
qlqpsilvlmp---

---vf*dvrqimnvdlmtkvinav*rfpmidvh*dvxmpmnvklixmvknvxsdpidhhh
qkfvh*daxqnmnvnlmimvknvv*rfivmkfvi*ivvevlnvkldmmvqnvvsvqkdht
hhnmxnvirdaxqamnvklinmeknvallpidhhqnal*dvxqdmnvesxtlvknvvlkf
xtinvh*dvxqamnvklinmeknvallpidhhqnxh*dvxqnmnvesitlvknavlkvem
iv*lvktxtvkekvyivp*klyqlikkivgksssmlfhxs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHG426 (CHG426Q) /CSM/CH/CHG4-B/CHG426Q.Seq.d/                       2109   0.0
AHE229 (AHE229Q) /CSM/AH/AHE2-B/AHE229Q.Seq.d/                       2020   0.0
CHG879 (CHG879Q) /CSM/CH/CHG8-D/CHG879Q.Seq.d/                       1511   0.0
AHD303 (AHD303Q) /CSM/AH/AHD3-A/AHD303Q.Seq.d/                       1507   0.0
CHF544 (CHF544Q) /CSM/CH/CHF5-B/CHF544Q.Seq.d/                       1503   0.0
CHL853 (CHL853Q) /CSM/CH/CHL8-C/CHL853Q.Seq.d/                       1499   0.0
CHM150 (CHM150Q) /CSM/CH/CHM1-C/CHM150Q.Seq.d/                       1495   0.0
AHF349 (AHF349Q) /CSM/AH/AHF3-C/AHF349Q.Seq.d/                       1491   0.0
AHA358 (AHA358Q) /CSM/AH/AHA3-C/AHA358Q.Seq.d/                       1489   0.0
CHH465 (CHH465Q) /CSM/CH/CHH4-C/CHH465Q.Seq.d/                       1487   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.  1463   0.0    8
AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.  1463   0.0    9
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    60   1e-11  4
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    60   4e-11  4
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3.    34   0.034  13
AL161543|AL161543.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 43.    42   0.26   8
Z97340|Z97340.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment  No. 5.    42   0.35   8
AC127160|AC127160.3 Rattus norvegicus clone CH230-460D14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.35   1
AC141955|AC141955.2 Rattus norvegicus clone CH230-418P10, WORKING DRAFT SEQUENCE, 29 unordered pieces.    48   0.35   1
AC084581|AC084581.1 Caenorhabditis briggsae cosmid G40L08, complete sequence.    38   0.37   4
dna update 2004.10. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   605   e-172
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   212   2e-53
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...   132   2e-29
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    88   5e-16
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        87   9e-16
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    83   2e-14
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    64   1e-08
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    60   1e-07
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    60   1e-07
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    59   3e-07
protein update 2009. 4. 1
PSORT 

 psg: 1.00  gvh: 0.63  alm: 0.30  top: 0.27  tms: 0.07  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for CHG426 is end
5' end seq. ID CHG426F
5' end seq. 
>CHG426F.Seq
ATTCAATTTTATTTTTAATNAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTAAA
AATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTACGATATT
CCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAANAATGTCA
TAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGGGC
TTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCATC
CAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAAT
TACAACTCCAACCGAGTATTCTTGTTCTGATGCCAANNNNNNNNNN
Length of 5' end seq. 406
3' end seq. ID CHG426Z
3' end seq. 
>CHG426Z.Seq
NNNNNNNNNNTTGTTTTTTAAGATGTCCGCCAAATCATGAATGTAGATTTAATGACCAAG
GTCATCAATGCTGTGTAAAGGTTCCCCATGATAGATGTTCATTAAGATGTCCNCATGCCC
ATGAATGTAAAGTTGATCNCNATGGTAAAGAATGTTGNGTCAGATCCCATAGACCACCAC
CACCAGAAGTTTGTTCATTAAGATGCCCNCCAAAACATGAATGTAAATTTGATGATCATG
GTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTAGAG
GTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAGACCAC
ACCCACCACAACATGAANAATGTAATAAGAGATGCCCNCCAGGCCATGAATGTAAAGTTG
ATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCTTTAA
GATGTCCNCCAAGACATGAATGTAGAGTCANCCACTTTGGTGAAGAATGTTGTGTTAAAG
TTCNCCACGATAAATGTTCATTGAGATGTCCNCCAGGCCATGAATGTAAAGTTGATCAAC
ATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGNTCATTAAGATGTC
CNCCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAGAA
ATGATTGTTTAACTTGTGAAGACNTANACTGTGAAAGAAAAGGTTTACATTGTGCCATGA
AAACTGTACCAATTGATAAAGAAAATTGTTGGAAAAAGTTCCAGTATGTTATTCCACCNA
TCCAT
Length of 3' end seq. 845
Connected seq. ID CHG426P
Connected seq. 
>CHG426P.Seq
ATTCAATTTTATTTTTAATNAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTAAA
AATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTACGATATT
CCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAANAATGTCA
TAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGGGC
TTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCATC
CAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAAT
TACAACTCCAACCGAGTATTCTTGTTCTGATGCCAA----------TTGTTTTTTAAGAT
GTCCGCCAAATCATGAATGTAGATTTAATGACCAAGGTCATCAATGCTGTGTAAAGGTTC
CCCATGATAGATGTTCATTAAGATGTCCNCATGCCCATGAATGTAAAGTTGATCNCNATG
GTAAAGAATGTTGNGTCAGATCCCATAGACCACCACCACCAGAAGTTTGTTCATTAAGAT
GCCCNCCAAAACATGAATGTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTC
ATTGTGATGAAGTTTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATG
ATGGTTCAAAATGTTGTGTCCGTTCAGAAAGACCACACCCACCACAACATGAANAATGTA
ATAAGAGATGCCCNCCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCG
TTGTTGCCCATAGACCACCACCAAAATGCTCTTTAAGATGTCCNCCAAGACATGAATGTA
GAGTCANCCACTTTGGTGAAGAATGTTGTGTTAAAGTTCNCCACGATAAATGTTCATTGA
GATGTCCNCCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTG
CCCATAGACCACCACCAAAATGNTCATTAAGATGTCCNCCAAAACATGAATGTAGAATCA
ATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACN
TANACTGTGAAAGAAAAGGTTTACATTGTGCCATGAAAACTGTACCAATTGATAAAGAAA
ATTGTTGGAAAAAGTTCCAGTATGTTATTCCACCNATCCAT
Length of connected seq. 1231
Full length Seq ID -
Full length Seq. -
Length of full length seq. -