CHG421 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHG421
Library	CH (Link to library)
Clone ID	CHG421 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15687-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHG4-A/CHG421Q.Seq.d/
Representative seq. ID	CHG421P (Link to Original site)
Representative DNA sequence	>CHG421 (CHG421Q) /CSM/CH/CHG4-A/CHG421Q.Seq.d/ ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA AGAAACAGCGGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGA ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT ATCAGCATTTGTAAATAGATGTTATTCATTAATTXXXXXXXXXXTGAATAATATGTACCT TTCCAGAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCTCCGAGACTG GTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTT ATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTAC CAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTG AAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTAT CAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATA TCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACA TCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTG AAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTAT TAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTG AAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAA ATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATAGAATTATTTAAATATTC TTTCNCGGTTCAAGA
sequence update	2002.10.25
Translated Amino Acid sequence	*ktnnpiKMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKI EEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILK ETAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLI--- ---NNMYLSRVGDRVGKRHtigclrdwfnlfrsftfnhsywcyglyigqirwftll *cyqirtrlekdskiprfnlkrcpltnnssyqfgfnhssfkfirgyildvgkr fryrvskyrstfkeflyhrtclglklhrsydq*rtleiksnrcsfiih*wlcnw fglylkiirskrfrfsslvrsysiemnskenvgskckryqrgsksfsnkdskfpt rielfkysfxvq
Translated Amino Acid sequence (All Frames)	Frame A: iikneqpnlenghilfg*wskriyicirwfiigwratintsicslcttnled rrsirniksmgykyrssfnl*tstirfnignsnfqsnisilfnlsnnfk rnsgkilftinsiwrdyriirrctnswiitiydfisickmlfin--- ---iictfpelvtelerdirqlgvsetgltfldhfrllithignamgyirlvrsgglhy csnaikfvpdlkkipkfqdltskdalspetiqastnldsiihnlsnnlsegteyfkmlvn vfatefrnianqhlknfyiivpalasnyidhminskdklfkkskaigaeallftddgfai glayilklldqnkdfdslhwfdriqlkcetdqkrmlaeanakgikedqnhlaikkiqnfq qenylnilsrfk Frame B: *ktnnpiKMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKI EEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILK ETAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLI--- ---eyvpfqswqswketldnwvsprlvpfiildfslilvmlwvildwsdpvvyti vvmlsnsyqtkrfqnskipqkmpshlkqfklvpiwiqsfiifqiiyqrvlntlrcwt fslqsfeislinirisissylpwpqitsiisivkinslrnqkqsvlklyyslmmalql vwlisnyikikisilfigsivfnnvklikrecwlkqmqkvskrikiiqlkrfkisn knriiiffxgsr Frame C: nkkrttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnnlnlinlqlimhnkfgr* kkhmkhmkygiiiqfqfiinlmnnilnwlkliikfsikyyslqfviklefk kqrkvnfihhqylerlqvnhqkvmyklklvnyyhlliyqhlidvih--- ---NNMYLSRVGDRVGKRHtigclrdwfnlfrsftfnhsywcyglyigqirwftll cyqirtrlekdskiprfnlkrcpltnnssyqfgfnhssfkfirgyildvgkr fryrvskyrstfkeflyhrtclglklhrsydq*rtleiksnrcsfiih*wlcnw fglylkiirskrfrfsslvrsysiemnskenvgskckryqrgsksfsnkdskfpt rielfkysfxvq
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHG421 (CHG421Q) /CSM/CH/CHG4-A/CHG421Q.Seq.d/ 2462 0.0 VHA684 (VHA684Q) /CSM/VH/VHA6-D/VHA684Q.Seq.d/ 1461 0.0 CHG805 (CHG805Q) /CSM/CH/CHG8-A/CHG805Q.Seq.d/ 1461 0.0 VHP871 (VHP871Q) /CSM/VH/VHP8-C/VHP871Q.Seq.d/ 1459 0.0 VHK424 (VHK424Q) /CSM/VH/VHK4-A/VHK424Q.Seq.d/ 1459 0.0 VHB614 (VHB614Q) /CSM/VH/VHB6-A/VHB614Q.Seq.d/ 1459 0.0 CHG615 (CHG615Q) /CSM/CH/CHG6-A/CHG615Q.Seq.d/ 1459 0.0 VHI518 (VHI518Q) /CSM/VH/VHI5-A/VHI518Q.Seq.d/ 1453 0.0 SHK609 (SHK609Q) /CSM/SH/SHK6-A/SHK609Q.Seq.d/ 1453 0.0 SHL542 (SHL542Q) /CSM/SH/SHL5-B/SHL542Q.Seq.d/ 1449 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AE017263\|AE017263.1 Mesoplasma florum L1 complete genome. 32 4e-06 27 AC115598\|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 36 3e-05 13 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 32 7e-05 21 AC115599\|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 36 9e-05 11 AE017337\|AE017337.1 Mycoplasma mobile 163K section 1 of 3 of... 36 3e-04 16 AR271569\|AR271569.1 Sequence 1 from patent US 6503729. 36 3e-04 32 BU746157\|BU746157.1 CH3#002_C07T7 Canine heart normalized cDNA Library in pBluescript Canis familiaris cDNA clone CH3#002_C07 5', mRNA sequence. 38 4e-04 3 AE017197\|AE017197.1 Rickettsia typhi str. Wilmington complete genome. 32 5e-04 28 AL139077\|AL139077.2 Campylobacter jejuni NCTC11168 complete genome; segment 4/6. 38 6e-04 14 AP004170\|AP004170.1 Mycoplasma penetrans HF-2 DNA, complete genome, section 1/5. 34 0.001 17
dna update	2004.10. 7
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54R74) RecName: Full=UPF0681 protein; 462 e-128 BC040936_1(BC040936\|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 229 1e-58 AB028956_1(AB028956\|pid:none) Homo sapiens mRNA for KIAA1033 pro... 229 1e-58 BC143373_1(BC143373\|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 229 1e-58 BC020314_1(BC020314\|pid:none) Mus musculus RIKEN cDNA A230046K03... 227 6e-58 (Q3UMB9) RecName: Full=UPF0681 protein KIAA1033; 227 6e-58 AK161247_1(AK161247\|pid:none) Mus musculus adult male testis cDN... 227 6e-58 AK145000_1(AK145000\|pid:none) Mus musculus mammary gland RCB-052... 227 6e-58 BC110850_1(BC110850\|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 174 6e-42 CP000600_221(CP000600\|pid:none) Ostreococcus lucimarinus CCE9901... 171 6e-41
protein update	2009. 4. 1
PSORT	psg: 0.79 gvh: 0.25 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 28.0 %: nuclear 16.0 %: cytoskeletal 4.0 %: mitochondrial 4.0 %: vacuolar 4.0 %: plasma membrane >> prediction for CHG421 is cyt
5' end seq. ID	CHG421F
5' end seq.	>CHG421F.Seq ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA AGAAACAGCGGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGA ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT ATCAGCATTTGTAAATAGATGTTATTCATTAATTNNNNNNNNNN
Length of 5' end seq.	524
3' end seq. ID	CHG421Z
3' end seq.	>CHG421Z.Seq NNNNNNNNNNTGAATAATATGTACCTTTCCAGAGTTGGTGACAGAGTTGGAAAGAGACAT TAGACAATTGGGTGTCTCCGAGACTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAAT CACTCATATTGGTAATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTA TTGTAGTAATGCTATCAAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTT AACCTCAAAAGATGCCCTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAAT CATTCATAATCTTTCAAATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAA CGTTTTCGCTACAGAGTTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCAT CGTACCTGCCTTGGCCTCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTT TAAGAAATCAAAAGCAATCGGTGCTGAAGCTTTATTATTCACTGATGATGGCTTTGCAAT TGGTTTGGCTTATATCTTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTG GTTCGATCGTATTCAATTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAA TGCAAAAGGTATCAAAGAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCA ACAAGAATAGAATTATTTAAATATTCTTTCNCGGTTCAAGA
Length of 3' end seq.	761
Connected seq. ID	CHG421P
Connected seq.	>CHG421P.Seq ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA AGAAACAGCGGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGA ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT ATCAGCATTTGTAAATAGATGTTATTCATTAATT----------TGAATAATATGTACCT TTCCAGAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCTCCGAGACTG GTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTT ATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTAC CAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTG AAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTAT CAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATA TCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACA TCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTG AAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTAT TAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTG AAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAA ATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATAGAATTATTTAAATATTC TTTCNCGGTTCAAGA
Length of connected seq.	1265
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas