CHG384
Library CH
(Link to library)
Clone ID CHG384
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14315-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHG384 (CHG384Q) /CSM/CH/CHG3-D/CHG384Q.Seq.d/
ATATAATTCATTAAAAGATTCTTATTTAGAACTTAAACAAAAATATCAAGAAGAAAGAGA
AAAACGATTGGAATTGGAAAAAGAATTAGAACGTTATAGATTATCATCACCAGTTACATC
TGCATCGTCATTGGTTGATACATTATCATCACCAAATAATTTAAATATAAATAGTAATAA
TTCGACAACAACAACAACTACAACTACAACAACTACAACTACACCAATACCATTATCAAC
ATCAAATAATAATAATAATAATAATAATAATTCAACATTAACAGTTCAAGATCAAGTTAC
AACATCAAAACAAATTTTAGAGATTTATGAAGATATTTATAATTTATGGGGTTATTATGA
AAAGAGAGTTAAATGGAAGGAAAACACTGAAAAGGAAGCAAATCAACAATTGGAAGTTAT
TAAATCAAAGATTGATTTATTCACAAGTATGGTTGGATTAGAAAATCATTTTAGTTTCAA
TGATGATACCAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
YNSLKDSYLELKQKYQEEREKRLELEKELERYRLSSPVTSASSLVDTLSSPNNLNINSNN
STTTTTTTTTTTTTPIPLSTSNNNNNNNNNSTLTVQDQVTTSKQILEIYEDIYNLWGYYE
KRVKWKENTEKEANQQLEVIKSKIDLFTSMVGLENHFSFNDDT---


Translated Amino Acid sequence (All Frames)
Frame A:
i*fikrflfrt*tkisrrkrktigigkrirtl*iiitsyicivig*yiiitk*fkyk***
fdnnnnynynnynytntiinik********fninssrssyniktnfrdl*ryl*fmgll*
kes*megkh*kgskstigsy*ikd*fihkygwirksf*fq**y---


Frame B:
YNSLKDSYLELKQKYQEEREKRLELEKELERYRLSSPVTSASSLVDTLSSPNNLNINSNN
STTTTTTTTTTTTTPIPLSTSNNNNNNNNNSTLTVQDQVTTSKQILEIYEDIYNLWGYYE
KRVKWKENTEKEANQQLEVIKSKIDLFTSMVGLENHFSFNDDT---


Frame C:
iih*kili*nlnknikkkekndwnwkkn*nvidyhhqlhlhrhwlihyhhqii*i*ivii
rqqqqlqlqqlqlhqyhyqhqiiiiiiiiiqh*qfkiklqhqnkf*rfmkifiiygvimk
relngrktlkrkqinnwkllnqrliysqvwld*kiilvsmmi---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHG384 (CHG384Q) /CSM/CH/CHG3-D/CHG384Q.Seq.d/ 436 e-121
VHO861 (VHO861Q) /CSM/VH/VHO8-C/VHO861Q.Seq.d/ 40 0.031
VHL724 (VHL724Q) /CSM/VH/VHL7-A/VHL724Q.Seq.d/ 40 0.031
VHF278 (VHF278Q) /CSM/VH/VHF2-D/VHF278Q.Seq.d/ 40 0.031
SSM518 (SSM518Q) /CSM/SS/SSM5-A/SSM518Q.Seq.d/ 40 0.031
FC-AE14 (FC-AE14Q) /CSM/FC/FC-AE/FC-AE14Q.Seq.d/ 40 0.031
CHQ659 (CHQ659Q) /CSM/CH/CHQ6-C/CHQ659Q.Seq.d/ 40 0.031
AHN395 (AHN395Q) /CSM/AH/AHN3-D/AHN395Q.Seq.d/ 40 0.031
AHJ888 (AHJ888Q) /CSM/AH/AHJ8-D/AHJ888Q.Seq.d/ 40 0.031
AHI278 (AHI278Q) /CSM/AH/AHI2-D/AHI278Q.Seq.d/ 40 0.031

own update 2002.11.21
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 436 0.0 6
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 34 3e-06 19
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence. 30 9e-06 13
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3. 38 5e-05 12
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 36 1e-04 10
AL049183|AL049183.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P6. 34 1e-04 10
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 3e-04 14
AP004172|AP004172.1 Mycoplasma penetrans HF-2 DNA, complete genome, section 3/5. 36 3e-04 13
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5. 34 5e-04 13
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 32 0.001 13
dna update 2004.10. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC115604_14(AC115604|pid:none) Dictyostelium discoideum chromoso... 152 3e-36
AF268611_12(AF268611|pid:none) Uncultured marine group II euryar... 34 1.6
D43959_1(D43959|pid:none) Thiobacillus thiooxidans plasmid pTTY1... 33 4.7
CR382125_227(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 32 6.1

protein update 2008.10.30
PSORT

psg: 0.75 gvh: 0.46 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for CHG384 is cyt

5' end seq. ID CHG384F
5' end seq.
>CHG384F.Seq
ATATAATTCATTAAAAGATTCTTATTTAGAACTTAAACAAAAATATCAAGAAGAAAGAGA
AAAACGATTGGAATTGGAAAAAGAATTAGAACGTTATAGATTATCATCACCAGTTACATC
TGCATCGTCATTGGTTGATACATTATCATCACCAAATAATTTAAATATAAATAGTAATAA
TTCGACAACAACAACAACTACAACTACAACAACTACAACTACACCAATACCATTATCAAC
ATCAAATAATAATAATAATAATAATAATAATTCAACATTAACAGTTCAAGATCAAGTTAC
AACATCAAAACAAATTTTAGAGATTTATGAAGATATTTATAATTTATGGGGTTATTATGA
AAAGAGAGTTAAATGGAAGGAAAACACTGAAAAGGAAGCAAATCAACAATTGGAAGTTAT
TAAATCAAAGATTGATTTATTCACAAGTATGGTTGGATTAGAAAATCATTTTAGTTTCAA
TGATGATACCANNNNNNNNNN
Length of 5' end seq. 501
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -