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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHG271
Library CH
(Link to library)
Clone ID CHG271
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11731-1
Original site URL
Representative seq. ID CHG271P
(Link to Original site)
Representative DNA sequence 
>CHG271 (CHG271Q) /CSM/CH/CHG2-C/CHG271Q.Seq.d/
TTACAATTTTGAAATGAGTGGTTCGATTTACAAAATTGTGGGGCTTGTTTGTTATTTTTA
TTTTTATTATTAATTATTTATTTTTATTTTTATTTTTGATTTTGATTCTATTTTTAAGTA
TTTAAATAAAATAAAATCAAAAAAAAAAXXXXXXXXXXATTTGATTCAAAATTAACTTTA
ATTTTAAATTCAAAGATTACTAGAGAATCATTATTTTTTGGTTTAAAATATTTAGAACTT
TCAACATTTAATCAATCATTTGTAACTTTACCAATTCCTGAAACTGTTGAATACTTAAAG
TTACCAATGTATAACCAGCCATTAACNCCAAAATTATTACCAAGCGGAATTAAATTTTTA
ATATTACCATCATTTAATCATCCAATTAGGGGTGAATNTATTCCNCCATCTGTAATTCAC
CTAGTTTTCAATAAACTTTTTTCAGTTATTGAATCAATACCTTCATCAGTTAAATATTTG
GATTTGGGTGATGAATATTATGTTTATCCAGGTCATTTGTTACATTCAGTTNTATCATTT
ANAAGTGGATTAAAATTTAGAGTTACAGACCCCATTCCATATTTTCAATCGTTAACAAAT
TTAAATCTTTATAATTTTAATATTGAATTATTAAAAAATGGTATTTCATCAAATGTAACC
ATCGTTAACANTTGGNTCAAATTTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
ynfemsgsiykivglvcyfyfyy*LFIFIFIFDFDSIFKYLNKIKSKKK---

---FDSKLTLILNSKITRESLFFGLKYLELSTFNQSFVTLPIPETVEYLKLPMYNQPLTP
KLLPSGIKFLILPSFNHPIRGEXIPPSVIHLVFNKLFSVIESIPSSVKYLDLGDEYYVYP
GHLLHSVXSFXSGLKFRVTDPIPYFQSLTNLNLYNFNIELLKNGISSNVTIVNXWXKF
Translated Amino Acid sequence (All Frames) 
Frame A:
lqf*newfdlqncgacllflfllliiyfyfyf*f*fyf*vfk*nkikkk---

---i*fkinfnfkfkdy*riiifwfkifrtfni*siicnftns*nc*ilkvtnv*painx
kiitkrn*ifnitii*ssn*g*xysxicnspsfq*tffsy*intfis*ifgfg**ilcls
rsfvtfsxiixkwiki*syrphsifsivnkfksl*f*y*iikkwyfikcnhr*xlxqil

Frame B:
ynfemsgsiykivglvcyfyfyy*LFIFIFIFDFDSIFKYLNKIKSKKK---

---FDSKLTLILNSKITRESLFFGLKYLELSTFNQSFVTLPIPETVEYLKLPMYNQPLTP
KLLPSGIKFLILPSFNHPIRGEXIPPSVIHLVFNKLFSVIESIPSSVKYLDLGDEYYVYP
GHLLHSVXSFXSGLKFRVTDPIPYFQSLTNLNLYNFNIELLKNGISSNVTIVNXWXKF

Frame C:
tilk*vvrftklwglfvififiinylflflflililflsi*ik*nqkk---

---liqn*l*f*iqrllenhyflv*ni*nfqhlinhl*lyqflkllnt*syqcitsh*xq
nyyqaelnf*yyhhliiqlgvnxfxhl*ft*fsinffqllnqylhqlniwiwvmnimfiq
vicyiqxyhlxvd*nlelqtpfhifnr*qi*ifiililny*kmvfhqm*psltxgsnf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHG271 (CHG271Q) /CSM/CH/CHG2-C/CHG271Q.Seq.d/                       1005   0.0
SSD770 (SSD770Q) /CSM/SS/SSD7-C/SSD770Q.Seq.d/                         40   0.043
SLG774 (SLG774Q) /CSM/SL/SLG7-D/SLG774Q.Seq.d/                         40   0.043
AHQ489 (AHQ489Q) /CSM/AH/AHQ4-D/AHQ489Q.Seq.d/                         40   0.043
AHP230 (AHP230Q) /CSM/AH/AHP2-B/AHP230Q.Seq.d/                         40   0.043
AHL408 (AHL408Q) /CSM/AH/AHL4-A/AHL408Q.Seq.d/                         40   0.043
AHJ821 (AHJ821Q) /CSM/AH/AHJ8-A/AHJ821Q.Seq.d/                         40   0.043
AHH506 (AHH506Q) /CSM/AH/AHH5-A/AHH506Q.Seq.d/                         40   0.043
AHH383 (AHH383Q) /CSM/AH/AHH3-D/AHH383Q.Seq.d/                         40   0.043
SSJ737 (SSJ737Q) /CSM/SS/SSJ7-B/SSJ737Q.Seq.d/                         38   0.17
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.   948   0.0    10
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          38   3e-11  25
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    40   2e-10  14
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    38   1e-08  24
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   4e-08  14
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    38   2e-07  13
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    32   2e-07  18
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    36   5e-07  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   5e-07  21
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    32   8e-07  16
dna update 2004.10. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115684_4(AC115684|pid:none) Dictyostelium discoideum chromosom...   323   2e-87
AC115598_30(AC115598|pid:none) Dictyostelium discoideum chromoso...   111   2e-23
(Q5UP38) RecName: Full=Putative FNIP repeat-containing protein L...    59   1e-07
(Q5UPD4) RecName: Full=Putative F-box and FNIP repeat-containing...    51   3e-05
(Q554M9) RecName: Full=FNIP repeat-containing protein DDB_G02746...    49   1e-04
AC116956_26(AC116956|pid:none) Dictyostelium discoideum chromoso...    49   1e-04
AC116960_62(AC116960|pid:none) Dictyostelium discoideum chromoso...    49   1e-04
AC117176_63(AC117176|pid:none) Dictyostelium discoideum chromoso...    46   9e-04
AC116957_13(AC116957|pid:none) Dictyostelium discoideum chromoso...    45   0.003
AC117075_45(AC117075|pid:none) Dictyostelium discoideum chromoso...    45   0.003
protein update 2009. 4. 1
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHG271 is cyt
5' end seq. ID CHG271F
5' end seq. 
>CHG271F.Seq
TTACAATTTTGAAATGAGTGGTTCGATTTACAAAATTGTGGGGCTTGTTTGTTATTTTTA
TTTTTATTATTAATTATTTATTTTTATTTTTATTTTTGATTTTGATTCTATTTTTAAGTA
TTTAAATAAAATAAAATCAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 158
3' end seq. ID CHG271Z
3' end seq. 
>CHG271Z.Seq
NNNNNNNNNNATTTGATTCAAAATTAACTTTAATTTTAAATTCAAAGATTACTAGAGAAT
CATTATTTTTTGGTTTAAAATATTTAGAACTTTCAACATTTAATCAATCATTTGTAACTT
TACCAATTCCTGAAACTGTTGAATACTTAAAGTTACCAATGTATAACCAGCCATTAACNC
CAAAATTATTACCAAGCGGAATTAAATTTTTAATATTACCATCATTTAATCATCCAATTA
GGGGTGAATNTATTCCNCCATCTGTAATTCACCTAGTTTTCAATAAACTTTTTTCAGTTA
TTGAATCAATACCTTCATCAGTTAAATATTTGGATTTGGGTGATGAATATTATGTTTATC
CAGGTCATTTGTTACATTCAGTTNTATCATTTANAAGTGGATTAAAATTTAGAGTTACAG
ACCCCATTCCATATTTTCAATCGTTAACAAATTTAAATCTTTATAATTTTAATATTGAAT
TATTAAAAAATGGTATTTCATCAAATGTAACCATCGTTAACANTTGGNTCAAATTTTA
Length of 3' end seq. 538
Connected seq. ID CHG271P
Connected seq. 
>CHG271P.Seq
TTACAATTTTGAAATGAGTGGTTCGATTTACAAAATTGTGGGGCTTGTTTGTTATTTTTA
TTTTTATTATTAATTATTTATTTTTATTTTTATTTTTGATTTTGATTCTATTTTTAAGTA
TTTAAATAAAATAAAATCAAAAAAAAAA----------ATTTGATTCAAAATTAACTTTA
ATTTTAAATTCAAAGATTACTAGAGAATCATTATTTTTTGGTTTAAAATATTTAGAACTT
TCAACATTTAATCAATCATTTGTAACTTTACCAATTCCTGAAACTGTTGAATACTTAAAG
TTACCAATGTATAACCAGCCATTAACNCCAAAATTATTACCAAGCGGAATTAAATTTTTA
ATATTACCATCATTTAATCATCCAATTAGGGGTGAATNTATTCCNCCATCTGTAATTCAC
CTAGTTTTCAATAAACTTTTTTCAGTTATTGAATCAATACCTTCATCAGTTAAATATTTG
GATTTGGGTGATGAATATTATGTTTATCCAGGTCATTTGTTACATTCAGTTNTATCATTT
ANAAGTGGATTAAAATTTAGAGTTACAGACCCCATTCCATATTTTCAATCGTTAACAAAT
TTAAATCTTTATAATTTTAATATTGAATTATTAAAAAATGGTATTTCATCAAATGTAACC
ATCGTTAACANTTGGNTCAAATTTTA
Length of connected seq. 676
Full length Seq ID -
Full length Seq. -
Length of full length seq. -