CHG266
Library CH
(Link to library)
Clone ID CHG266
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16524-1
Original site URL
Representative seq. ID CHG266P
(Link to Original site)
Representative DNA sequence
>CHG266 (CHG266Q) /CSM/CH/CHG2-C/CHG266Q.Seq.d/
CAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTAAATAGGCCTTCA
TGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGAA
TATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGGC
CAACAATTGGAATTTTCTCAAGGTGGTATCACTTCAAAAGATGGTAGTAAGAATAATTAT
CAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCCA
AATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAAT
GGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAAT
AATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGGT
CAAACTTATACTTTTACAXXXXXXXXXXTTCAGACATTTTAGTGGTATCCAATTCATTGG
CAGATGGTATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATA
AAGGTTTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAAT
CGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCA
CTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTG
AAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATC
AAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAA
TCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATA
AAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTT
CAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTT
TAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTG
GCGTTGTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACA
AAAACAAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACA
AAAAGAAACAAGCAAAAGAAAAGAAAGAAG
sequence update 2002.10.25
Translated Amino Acid sequence
qw*fl*l*ylfss*YLNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSGESVSVG
QQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDASHSKGGN
GKALTYDWSVSGADTNTQLNNLLDQNNATITIPNDLLSSGQTYTFT---

---SDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKKD
DEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPKT
VSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVDG
NIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNKS
KKTKEQINKEKEDKKKQAKEKKE


Translated Amino Acid sequence (All Frames)
Frame A:
qw*fl*l*ylfss*YLNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSGESVSVG
QQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDASHSKGGN
GKALTYDWSVSGADTNTQLNNLLDQNNATITIPNDLLSSGQTYTFT---

---frhfsgiqfigrwysskncnw*rtiysck**rfldyni*nstygik*ewsidwfqkg
**rsis*w*ktcfhskiqysikcfike*iktnl*nhw*tnyssikysfqs*i*snhfpkn
cft*tfqwwlsiinqwp*rsnyh*ygktfttkr*ri*mwlvelq*krmvnrwlfnp*srw
*ysm*m*psyrvwfn*ickilskhldhywtsswwrcicscngwyccigkekekqkqkeqi
kenqrtnqqrkrrqketskrker

Frame B:
ngnffscdisspvdt*iglhvvlfsllqlyklwvvlqdvnillqtf*wlhwvvvkvyqla
nnwnflkvvslqkmvvriiikl*hwnhhkiqlqw*ilklqmf*ihvvhwy*mlviqkvvm
ekh*pmigrlvgqiqtln*iiywikimqp*qfqmifchlvklill---

---SDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKKD
DEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPKT
VSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVDG
NIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNKS
KKTKEQINKEKEDKKKQAKEKKE

Frame C:
mvislvvisllqlilk*afm*fsflfcnftnfg*fskm*iycfkhsngyig*w*kciswp
tigifsrwyhfkrw**e*lsnynigtttrfnssgry*sskcfrfm*sigirc*sfkrw*w
ksinl*lvg*wgrykhsik*sigsk*cnhnnsk*sfviwsnlyfy---

---qtf*wypihwqmvffkelqlvknhlqlqvikvsrlqhlklyiwn*vrvvnrlvskrm
mkvnllmvknllslqnsvfhqvfyqrin*nkplkslvn*lqfhqifisiinlikpfsqkl
fhlnfsmvalnyqsmalkiklsliwenihhqkiknlnvvggapikkng*qmvvqpik*mv
ifnvnvtilqslv*lnlqnplktfgslldq*lvalylqlqwlvllyw*rerktktkrtnq
rkpknkstkkkktkrnkqkkrkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHG266 (CHG266Q) /CSM/CH/CHG2-C/CHG266Q.Seq.d/ 2288 0.0
SHL489 (SHL489Q) /CSM/SH/SHL4-D/SHL489Q.Seq.d/ 1332 0.0
SHL119 (SHL119Q) /CSM/SH/SHL1-A/SHL119Q.Seq.d/ 1332 0.0
SHK593 (SHK593Q) /CSM/SH/SHK5-D/SHK593Q.Seq.d/ 1332 0.0
SHJ824 (SHJ824Q) /CSM/SH/SHJ8-A/SHJ824Q.Seq.d/ 1332 0.0
SHD762 (SHD762Q) /CSM/SH/SHD7-C/SHD762Q.Seq.d/ 1332 0.0
SHD253 (SHD253Q) /CSM/SH/SHD2-C/SHD253Q.Seq.d/ 1332 0.0
SHB414 (SHB414Q) /CSM/SH/SHB4-A/SHB414Q.Seq.d/ 1332 0.0
SFG748 (SFG748Q) /CSM/SF/SFG7-B/SFG748Q.Seq.d/ 1332 0.0
CHS207 (CHS207Q) /CSM/CH/CHS2-A/CHS207Q.Seq.d/ 1332 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BX119904|BX119904.4 Human DNA sequence from clone RP11-232D9 on chromosome X. 36 2e-04 14
AC013774|AC013774.3 Homo sapiens clone RP11-10P1, WORKING DRAFT SEQUENCE, 11 unordered pieces. 48 0.36 1
AC103541|AC103541.6 Homo sapiens BAC clone RP11-818M13 from 4, complete sequence. 48 0.36 1
AC097518|AC097518.2 Homo sapiens BAC clone RP11-487E13 from 4, complete sequence. 48 0.36 1
AC024453|AC024453.2 Homo sapiens chromosome 4 clone RP11-2B17 map 4, WORKING DRAFT SEQUENCE, 51 unordered pieces. 48 0.36 1
AC099715|AC099715.9 Mus musculus chromosome 10, clone RP23-346B18, complete sequence. 38 0.42 8
U66528|U66528.1 Dictyostelium discoideum CigB (cigB) mRNA, partial cds. 38 0.45 3
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 32 0.62 15
AJ410884|AJ410884.1 Influenza A virus (swine/Cotes d'Armor/1515/99 (H1N1)) partial N1NA gene for Neuraminidase, genomic RNA. 42 0.66 2
AJ410883|AJ410883.1 Influenza A virus (swine/Cotes d'Armor/1482/99 (H1N1)) partial N1NA gene for Neuraminidase, genomic RNA. 42 0.68 2
dna update 2004.10. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF203419_1(EF203419|pid:none) Strongylocentrotus purpuratus rece... 52 4e-05
AK154648_1(AK154648|pid:none) Mus musculus NOD-derived CD11c +ve... 50 2e-04
(Q8R0T6) RecName: Full=Probable G-protein coupled receptor 97; F... 50 2e-04
AK037149_1(AK037149|pid:none) Mus musculus 6 days neonate skin c... 50 2e-04
AB041939_1(AB041939|pid:none) Homo sapiens KPG_006 mRNA for G-pr... 50 2e-04
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind... 48 6e-04
(Q8K3V3) RecName: Full=G-protein coupled receptor 56; Flags: Pre... 47 0.002
AK295345_1(AK295345|pid:none) Homo sapiens cDNA FLJ55998 complet... 46 0.003
AF166382_1(AF166382|pid:none) Mus musculus serpentine receptor (... 45 0.004
AY181246_1(AY181246|pid:none) Homo sapiens G protein-coupled rec... 45 0.007
protein update 2009. 4. 1
PSORT

psg: 0.90 gvh: 0.59 alm: 0.22 top: 1.17 tms: 0.07 mit: 0.48 mip: 0.05
nuc: 0.17 erl: 0.00 erm: 1.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: mitochondrial
12.0 %: vesicles of secretory system
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for CHG266 is cyt

5' end seq. ID CHG266F
5' end seq.
>CHG266F.Seq
CAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTAAATAGGCCTTCA
TGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGAA
TATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGGC
CAACAATTGGAATTTTCTCAAGGTGGTATCACTTCAAAAGATGGTAGTAAGAATAATTAT
CAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCCA
AATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAAT
GGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAAT
AATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGGT
CAAACTTATACTTTTACANNNNNNNNNN
Length of 5' end seq. 508
3' end seq. ID CHG266Z
3' end seq.
>CHG266Z.Seq
NNNNNNNNNNTTCAGACATTTTAGTGGTATCCAATTCATTGGCAGATGGTATTCTTCAAA
GAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTACAA
CATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAGG
ATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTATTC
CATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACTAA
TTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAAAA
CTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGATC
AAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGGTT
GGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGATG
GTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAAAT
CCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGCGTTGTATTTGCAGCTG
CAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGAACAAAT
CAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAAAAAGAAACAAGCAAAAG
AAAAGAAAGAAG
Length of 3' end seq. 792
Connected seq. ID CHG266P
Connected seq.
>CHG266P.Seq
CAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTAAATAGGCCTTCA
TGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGAA
TATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGGC
CAACAATTGGAATTTTCTCAAGGTGGTATCACTTCAAAAGATGGTAGTAAGAATAATTAT
CAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCCA
AATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAAT
GGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAAT
AATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGGT
CAAACTTATACTTTTACA----------TTCAGACATTTTAGTGGTATCCAATTCATTGG
CAGATGGTATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATA
AAGGTTTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAAT
CGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCA
CTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTG
AAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATC
AAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAA
TCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATA
AAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTT
CAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTT
TAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTG
GCGTTGTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACA
AAAACAAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACA
AAAAGAAACAAGCAAAAGAAAAGAAAGAAG
Length of connected seq. 1280
Full length Seq ID -
Full length Seq. -
Length of full length seq. -