AFF782
Library AF
(Link to library)
Clone ID AFF782
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11642-1
Original site URL
Representative seq. ID AFF782P
(Link to Original site)
Representative DNA sequence
>AFF782 (AFF782Q) /CSM/AF/AFF7-D/AFF782Q.Seq.d/
CACACTCATATATATAAACATTAATAAATAAATATTTAAATATGTCTAAAATACAAAAAA
AAGATACAGAACCATGGGTAGCAAAATATAGACCAAAAACAGTTGATGATGTTTCATATC
AAGAAGATGTTATTTCAGCATTAAAGAAATCATTAAATACAGGAAATTTACCACATTTAT
TATTTTATGGACCACCAGGTACAGGTAAAACATCAACAATTTTAGCTATTGCAATGGATA
TATATGGACCAGAATTAATGAAACAAAGAGTATTAGAATTGAATGCATCAGATGAAAGAG
GTATAGAAGTTGTACGTACAAAGATTAAAAATTTTGCAGGATATGCAGTGAATAAAACTA
CAACGGGTACAAGTAACCCAGGTGCAACTTTTAAATTGATTATATTGGATGAGGCAGATA
GTATGACAACGGACGCTCAAGCAGCATTACGTAGAACCATTGAAACCACATCTAAAACCA
CACGTTTTTGTTTACTTTGTAATTATATTTCACGTATTATCGATCCATTAGCATCGAGAT
GCGCTAAATTTCGTTTCAAACXXXXXXXXXXCGTTTCAAACCATTGGACACAGTGGCAAC
CATTGAGCGTTTAAAATTCATTAGTCAACAAGAGGGTATAAAATGTGAAGAATCAGTCTA
CCAAGCAATTCAAGTGGTTTCCAATGGTNATATGCGTAAAGCTATCACCTATCTTCAATC
AGCTTTTCGTTTCTTTGCTAATAAAATCTCTGAAGATGTCATCTATAATATAGCTGGTTC
TCTACCACCACAACTTATCAAACAGTTGGTAGATTGTTGTAAAAAGAATTCTTTCGATAG
ATTACAATCAATGGTACAATCTATCATTGCTCAAGGTTATCCAGTATCTCAAGTTATCTC
TCAACTCTTTGATTACGTTTTAACAACTAAAGATTTAAATCAATCTCAAAAATCTCATAT
CACCATGAAAATTGGTAATGTTGATAGAAATCTAATTGATGGTTNCTGAAGAATTTCTTC
AATTATTCGATTTATCTTCTTATATAATGAAACAATTAAATAATAATAGTA
sequence update 2001. 6. 2
Translated Amino Acid sequence
hsyi*TLINKYLNMSKIQKKDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLL
FYGPPGTGKTSTILAIAMDIYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTT
TGTSNPGATFKLIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRC
AKFRFK---

---RFKPLDTVATIERLKFISQQEGIKCEESVYQAIQVVSNGXMRKAITYLQSAFRFFAN
KISEDVIYNIAGSLPPQLIKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVL
TTKDLNQSQKSHITMKIGNVDRNLIDGX*rissiirfiflynetik***


Translated Amino Acid sequence (All Frames)
Frame A:
hthiykh**ini*iclkykkkiqnhg*qnidqkqlmmfhikkmlfqh*rnh*iqeiyhiy
yfmdhqvqvkhqqf*llqwiymdqn**nkey*n*mhqmkev*klyvqrlkilqdmq*ikl
qrvqvtqvqlln*lywmrqiv*qrtlkqhyveplkphlkphvfvyfviifhvlsih*hrd
alnfvsn---

---RFKPLDTVATIERLKFISQQEGIKCEESVYQAIQVVSNGXMRKAITYLQSAFRFFAN
KISEDVIYNIAGSLPPQLIKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVL
TTKDLNQSQKSHITMKIGNVDRNLIDGX*rissiirfiflynetik***

Frame B:
tliyinink*ifkyv*ntkkryrtmgski*tkns**cfisrrcyfsikeiikyrkfttfi
ilwttryr*ninnfsycngyiwtrinetksiriecir*kryrsctykd*kfcricse*ny
ngyk*prcnf*idyig*gr*ydngrsssit*nh*nhi*nhtflftl*lyftyyrsisiem
r*isfq---

---vsnhwtqwqplsv*nslvnkrv*nvknqstkqfkwfpmvicvklspifnqlfvslli
kslkmssii*lvlyhhnlsnsw*ivvkrilsidynqwynlsllkviqylklslnslitf*
qlki*inlknlisp*klvmliei*lmvxeeflqlfdlssyimkqlnnns

Frame C:
hsyi*TLINKYLNMSKIQKKDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLL
FYGPPGTGKTSTILAIAMDIYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTT
TGTSNPGATFKLIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRC
AKFRFK---

---fqtighsgnh*afkih*strgykm*rislpsnssgfqwxya*syhlssisfsflc**
nl*rchl*yswfsttttyqtvgrll*keffr*itingtiyhcsrlssissylstl*lrfn
n*rfksiskisyhhenw*c**ksn*wxlknffnysiylli**nn*iiiv

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFF782 (AFF782Q) /CSM/AF/AFF7-D/AFF782Q.Seq.d/ 2004 0.0
VFC333 (VFC333Q) /CSM/VF/VFC3-B/VFC333Q.Seq.d/ 1065 0.0
CHA803 (CHA803Q) /CSM/CH/CHA8-A/CHA803Q.Seq.d/ 1065 0.0
SSF683 (SSF683Q) /CSM/SS/SSF6-D/SSF683Q.Seq.d/ 1005 0.0
CHA403 (CHA403Q) /CSM/CH/CHA4-A/CHA403Q.Seq.d/ 930 0.0
VFO860 (VFO860Q) /CSM/VF/VFO8-C/VFO860Q.Seq.d/ 86 1e-15
SLE671 (SLE671Q) /CSM/SL/SLE6-C/SLE671Q.Seq.d/ 86 1e-15
AFO727 (AFO727Q) /CSM/AF/AFO7-B/AFO727Q.Seq.d/ 86 1e-15
SFA123 (SFA123Q) /CSM/SF/SFA1-A/SFA123Q.Seq.d/ 80 8e-14
SLK433 (SLK433Q) /CSM/SL/SLK4-B/SLK433Q.Seq.d/ 48 3e-04

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL408570|AL408570.1 T3 end of clone AV0AA009D04 of library AV0AA from strain CBS 379 ofSaccharomyces exiguus. 66 2e-17 2
BI517246|BI517246.1 BB160024B20E10 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160024B20E10 5', mRNA sequence. 46 2e-11 4
AL436109|AL436109.1 T3 end of clone BC0AA001D08 of library BC0AA from strain CBS 767 of Debaryomyces hansenii. 52 4e-11 3
BU495506|BU495506.1 PfESToab73g08.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O96260 O96260 REPLICATION FACTOR C, 40 KDA SUBUNIT ;, mRNA sequence. 48 1e-09 3
BI506701|BI506701.1 BB170029A20G09 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170029A20G09 5', mRNA sequence. 46 1e-09 3
BQ091272|BQ091272.1 ku15b07.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:O44175 O44175 F58F6.4 PROTEIN. [1] ;, mRNA sequence. 76 1e-09 1
BU498017|BU498017.1 PfESToab91e09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O96260 O96260 REPLICATION FACTOR C, 40 KDA SUBUNIT ;, mRNA sequence. 48 2e-09 3
AE001420|AE001420.2 Plasmodium falciparum 3D7 chromosome 2 section 57 of 73 of the complete sequence. 48 3e-09 6
BI814613|BI814613.1 PfESToaa40a12.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O96260 O96260 REPLICATION FACTOR C, 40 KDA SUBUNIT ;, mRNA sequence. 48 3e-09 3
CD420679|CD420679.1 ku90b09.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:AC11_CAEEL P34429 PUTATIVE ACTIVATOR 1 36 KD SUBUNIT ;, mRNA sequence. 74 5e-09 1
dna update 2004. 4.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP008218_387(AP008218|pid:none) Oryza sativa (japonica cultivar-... 224 8e-87
EU959995_1(EU959995|pid:none) Zea mays clone 221054 replication ... 226 2e-86
BT039473_1(BT039473|pid:none) Zea mays full-length cDNA clone ZM... 226 2e-86
AC140916_27(AC140916|pid:none) Medicago truncatula clone mth2-12... 227 3e-86
BC135432_1(BC135432|pid:none) Xenopus tropicalis replication fac... 233 1e-84
BC168166_1(BC168166|pid:none) Rattus norvegicus replication fact... 228 3e-84
AB080268_1(AB080268|pid:none) Xenopus laevis RFC2 mRNA for repli... 232 8e-84
AY056210_1(AY056210|pid:none) Arabidopsis thaliana putative repl... 226 2e-83
(Q99J62) RecName: Full=Replication factor C subunit 4; AltName: ... 226 7e-83
AJ721123_1(AJ721123|pid:none) Gallus gallus mRNA for hypothetica... 223 7e-83
protein update 2009. 4.20
PSORT

psg: 0.39 gvh: 0.24 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for AFF782 is nuc

5' end seq. ID AFF782F
5' end seq.
>AFF782F.Seq
CACACTCATATATATAAACATTAATAAATAAATATTTAAATATGTCTAAAATACAAAAAA
AAGATACAGAACCATGGGTAGCAAAATATAGACCAAAAACAGTTGATGATGTTTCATATC
AAGAAGATGTTATTTCAGCATTAAAGAAATCATTAAATACAGGAAATTTACCACATTTAT
TATTTTATGGACCACCAGGTACAGGTAAAACATCAACAATTTTAGCTATTGCAATGGATA
TATATGGACCAGAATTAATGAAACAAAGAGTATTAGAATTGAATGCATCAGATGAAAGAG
GTATAGAAGTTGTACGTACAAAGATTAAAAATTTTGCAGGATATGCAGTGAATAAAACTA
CAACGGGTACAAGTAACCCAGGTGCAACTTTTAAATTGATTATATTGGATGAGGCAGATA
GTATGACAACGGACGCTCAAGCAGCATTACGTAGAACCATTGAAACCACATCTAAAACCA
CACGTTTTTGTTTACTTTGTAATTATATTTCACGTATTATCGATCCATTAGCATCGAGAT
GCGCTAAATTTCGTTTCAAAC----------
Length of 5' end seq. 561
3' end seq. ID AFF782Z
3' end seq.
>AFF782Z.Seq
----------CGTTTCAAACCATTGGACACAGTGGCAACCATTGAGCGTTTAAAATTCAT
TAGTCAACAAGAGGGTATAAAATGTGAAGAATCAGTCTACCAAGCAATTCAAGTGGTTTC
CAATGGTNATATGCGTAAAGCTATCACCTATCTTCAATCAGCTTTTCGTTTCTTTGCTAA
TAAAATCTCTGAAGATGTCATCTATAATATAGCTGGTTCTCTACCACCACAACTTATCAA
ACAGTTGGTAGATTGTTGTAAAAAGAATTCTTTCGATAGATTACAATCAATGGTACAATC
TATCATTGCTCAAGGTTATCCAGTATCTCAAGTTATCTCTCAACTCTTTGATTACGTTTT
AACAACTAAAGATTTAAATCAATCTCAAAAATCTCATATCACCATGAAAATTGGTAATGT
TGATAGAAATCTAATTGATGGTTNCTGAAGAATTTCTTCAATTATTCGATTTATCTTCTT
ATATAATGAAACAATTAAATAATAATAGTA
Length of 3' end seq. 500
Connected seq. ID AFF782P
Connected seq.
>AFF782P.Seq
CACACTCATATATATAAACATTAATAAATAAATATTTAAATATGTCTAAAATACAAAAAA
AAGATACAGAACCATGGGTAGCAAAATATAGACCAAAAACAGTTGATGATGTTTCATATC
AAGAAGATGTTATTTCAGCATTAAAGAAATCATTAAATACAGGAAATTTACCACATTTAT
TATTTTATGGACCACCAGGTACAGGTAAAACATCAACAATTTTAGCTATTGCAATGGATA
TATATGGACCAGAATTAATGAAACAAAGAGTATTAGAATTGAATGCATCAGATGAAAGAG
GTATAGAAGTTGTACGTACAAAGATTAAAAATTTTGCAGGATATGCAGTGAATAAAACTA
CAACGGGTACAAGTAACCCAGGTGCAACTTTTAAATTGATTATATTGGATGAGGCAGATA
GTATGACAACGGACGCTCAAGCAGCATTACGTAGAACCATTGAAACCACATCTAAAACCA
CACGTTTTTGTTTACTTTGTAATTATATTTCACGTATTATCGATCCATTAGCATCGAGAT
GCGCTAAATTTCGTTTCAAAC----------CGTTTCAAACCATTGGACACAGTGGCAAC
CATTGAGCGTTTAAAATTCATTAGTCAACAAGAGGGTATAAAATGTGAAGAATCAGTCTA
CCAAGCAATTCAAGTGGTTTCCAATGGTNATATGCGTAAAGCTATCACCTATCTTCAATC
AGCTTTTCGTTTCTTTGCTAATAAAATCTCTGAAGATGTCATCTATAATATAGCTGGTTC
TCTACCACCACAACTTATCAAACAGTTGGTAGATTGTTGTAAAAAGAATTCTTTCGATAG
ATTACAATCAATGGTACAATCTATCATTGCTCAAGGTTATCCAGTATCTCAAGTTATCTC
TCAACTCTTTGATTACGTTTTAACAACTAAAGATTTAAATCAATCTCAAAAATCTCATAT
CACCATGAAAATTGGTAATGTTGATAGAAATCTAATTGATGGTTNCTGAAGAATTTCTTC
AATTATTCGATTTATCTTCTTATATAATGAAACAATTAAATAATAATAGTA
Length of connected seq. 1061
Full length Seq ID -
Full length Seq. -
Length of full length seq. -