CHG235 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHG235
Library	CH (Link to library)
Clone ID	CHG235 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16308-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHG2-B/CHG235Q.Seq.d/
Representative seq. ID	CHG235P (Link to Original site)
Representative DNA sequence	>CHG235 (CHG235Q) /CSM/CH/CHG2-B/CHG235Q.Seq.d/ AAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATATAAT GAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTCATT AAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTGTGATTCTGGATGGAC ATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGTTCA ATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATTGGATTTTT AGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGTTAA AAATGATAGAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGCAAG TTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATTTGG AAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACCAAC ATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCAXXXXXXXXXXCA ATCAGTTGAAGGTGGTAGAGAAACTCAAAGTTATTATCCAACTATTAATTCAGTTTATAT CGAATCTCAAAGTACTGGAAAAAGATTTGTTTGTAATAATGATAGATCAAGAGGTGTTTC AAGTCAAGGTCAAGGTTGCTTGGAAATGGCATTACATAGAAGTTTAACTTATGAAGATGG TAAAGGTTTAGAAATTCCTGCAATTGATGAATCCTCAATTAATGCACGTTTTGAATGTTA TTTAGATGAAGTACCATCAAATTCACAACAATCGAATGGTAGTGGTGGTGGTGATGATAT TAGAAAACAATCAATTAATTATCAACATAAATTCCAAATTTATCAAGGTCAAGATTCTTC TTATATGTCTTCAAAATCTTTTATGTTAAAACCATTACCAGAGTTTATTCATATTCTATC AATGGAAAGATCTGGTCCTCGTTCAATTAAATTAAGAATTCATAATATTGAAAATAATAA TCAATCTCCAATCACTTTTGATTTAAATGGCTTATTCTCTTTTATCAAATCAATTAAATC AATTAAAGAATATAATTTATCTTTAATCAATAGATTCGTTGATAATAATATTGATAATAT TATTTCTTCTCATCGTTCAATTGTTGGAAAAAATCTTTTCCCTATTAAAGATACTCCAAC TCGTTTCAACCCAATTAATACAAAACAAACTAAAATTACCTTATATCCATCAGAAATTAA AGCAATGAAATTACTTATCATTAAAATTA
sequence update	2002.10.25
Translated Amino Acid sequence	k*NSFNNNNLIFFIVFKDIMKNFYYFILILLFFNEVCYSLKDGEIKLHLIPHSHCDSGWT STMNEYYMGQVKSIISSMVQSLNVESNPPRKFVWSEIGFLEQWWDDMPIEIKNDFIKHVK NDRIEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHSSLTPT LQAQFGYKHVVLNRI--- ---QSVEGGRETQSYYPTINSVYIESQSTGKRFVCNNDRSRGVSSQGQGCLEMALHRSLT YEDGKGLEIPAIDESSINARFECYLDEVPSNSQQSNGSGGGDDIRKQSINYQHKFQIYQG QDSSYMSSKSFMLKPLPEFIHILSMERSGPRSIKLRIHNIENNNQSPITFDLNGLFSFIK SIKSIKEYNLSLINRFVDNNIDNIISSHRSIVGKNLFPIKDTPTRFNPINTKQTKITLYP SEIKAMKLLIIKI
Translated Amino Acid sequence (All Frames)	Frame A: kikfi**fnffhsiqryneklllfyinfiifsllfikrwntsfnstftlfwmd innerilygsskyyiingsiikcikstkiclvnwifrtmvgyannkfyktc k*nickwwmgne*smckfrkcntiikwtiyreiwkttrewmansiwtfiidtn itssiwltcciesys--- ---QSVEGGRETQSYYPTINSVYIESQSTGKRFVCNNDRSRGVSSQGQGCLEMALHRSLT YEDGKGLEIPAIDESSINARFECYLDEVPSNSQQSNGSGGGDDIRKQSINYQHKFQIYQG QDSSYMSSKSFMLKPLPEFIHILSMERSGPRSIKLRIHNIENNNQSPITFDLNGLFSFIK SIKSIKEYNLSLINRFVDNNIDNIISSHRSIVGKNLFPIKDTPTRFNPINTKQTKITLYP SEIKAMKLLIIKI Frame B: kNSFNNNNLIFFIVFKDIMKNFYYFILILLFFNEVCYSLKDGEIKLHLIPHSHCDSGWT STMNEYYMGQVKSIISSMVQSLNVESNPPRKFVWSEIGFLEQWWDDMPIEIKNDFIKHVK NDRIEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHSSLTPT LQAQFGYKHVVLNRI--- ---nqlkvveklkviiqlliqfisnlkvlekdlfvimidqevfqvkvkvawkwhyievl mkmvkvkflqlmnpqlmhvlnvimkyhqihnnrmvvvvvmilennqliininskfikv killiclqnllcnhyqslfifyqwkdlvlvqlnefiilkiiinlqsllimaysllsn qlnqlkniiylsidsliiiliilfllivqllekifsllkilqlvstqliqnklklpyih qklkqnylslkl Frame C: nkihliiiiffsyskiktfiilyfyyflmkfaihkmvklnfifhihivildgh qqtniiwvklkvlyhqwfnhmlnqihlenlfglkldfnnggmicqlklkmilnmlk mielnlmvdgmmkhvqvkvldnyqmdinllernlennqrvdgklihldihhhqh yklnlvinmlyivf--- ---isrwrnskllsnyfslyriskywkkicl***ikrcfksrsrllgngitkfnl rwrfrnscn*ilnctfmlfrstikfttiewwwwyktinlstipnlsrs rfflyvfkifyvktitrvysysingkiwssfniknsyksisnhffkwlilfyqi ninrififnqir*yyyffssfncwkksfpyrysnsfqpnyktnnylisi rnsneityh*n
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHG235 (CHG235Q) /CSM/CH/CHG2-B/CHG235Q.Seq.d/ 2415 0.0 SHC583 (SHC583Q) /CSM/SH/SHC5-D/SHC583Q.Seq.d/ 1481 0.0 CHF483 (CHF483Q) /CSM/CH/CHF4-D/CHF483Q.Seq.d/ 1475 0.0 SHD215 (SHD215Q) /CSM/SH/SHD2-A/SHD215Q.Seq.d/ 1473 0.0 SHC519 (SHC519Q) /CSM/SH/SHC5-A/SHC519Q.Seq.d/ 1473 0.0 SHC488 (SHC488Q) /CSM/SH/SHC4-D/SHC488Q.Seq.d/ 1473 0.0 CHR706 (CHR706Q) /CSM/CH/CHR7-A/CHR706Q.Seq.d/ 1473 0.0 CHQ857 (CHQ857Q) /CSM/CH/CHQ8-C/CHQ857Q.Seq.d/ 1473 0.0 CHQ538 (CHQ538Q) /CSM/CH/CHQ5-B/CHQ538Q.Seq.d/ 1473 0.0 CHM228 (CHM228Q) /CSM/CH/CHM2-B/CHM228Q.Seq.d/ 1473 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 48 6e-18 18 AE017263\|AE017263.1 Mesoplasma florum L1 complete genome. 36 7e-14 32 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 2e-13 21 CR382400\|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5. 32 2e-12 24 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 4e-12 16 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 40 5e-12 14 AE014816\|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence. 38 3e-11 20 AC117070\|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 38 4e-11 16 AF250284\|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 44 6e-11 17 AC116963\|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 40 4e-10 18
dna update	2004.10. 5
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54YC4) RecName: Full=Alpha-mannosidase D; EC=3.2.1.24... 147 8e-34 (Q54YF7) RecName: Full=Alpha-mannosidase B; EC=3.2.1.24... 145 2e-33 AB011474_23(AB011474\|pid:none) Arabidopsis thaliana genomic DNA,... 137 8e-31 AC148217_12(AC148217\|pid:none) Medicago truncatula clone mth2-20... 135 3e-30 BC142656_1(BC142656\|pid:none) Homo sapiens mannosidase, alpha, c... 134 9e-30 (P27046) RecName: Full=Alpha-mannosidase 2; EC=3.2.1.11... 133 2e-29 (P28494) RecName: Full=Alpha-mannosidase 2; EC=3.2.1.11... 131 5e-29 M24353_1(M24353\|pid:none) Rattus norvegicus alpha-mannosidase II... 131 5e-29 AL391146_7(AL391146\|pid:none) Arabidopsis thaliana DNA chromosom... 131 5e-29 AK161799_1(AK161799\|pid:none) Mus musculus 13 days embryo male t... 130 1e-28
protein update	2009. 4. 1
PSORT	psg: 0.94 gvh: 0.66 alm: 0.48 top: 0.47 tms: 0.00 mit: 0.29 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: extracellular, including cell wall 20.0 %: cytoplasmic 12.0 %: nuclear 8.0 %: mitochondrial 8.0 %: vacuolar 8.0 %: endoplasmic reticulum 4.0 %: Golgi >> prediction for CHG235 is exc
5' end seq. ID	CHG235F
5' end seq.	>CHG235F.Seq AAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATATAAT GAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTCATT AAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTGTGATTCTGGATGGAC ATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGTTCA ATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATTGGATTTTT AGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGTTAA AAATGATAGAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGCAAG TTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATTTGG AAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACCAAC ATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCANNNNNNNNNN
Length of 5' end seq.	598
3' end seq. ID	CHG235Z
3' end seq.	>CHG235Z.Seq NNNNNNNNNNCAATCAGTTGAAGGTGGTAGAGAAACTCAAAGTTATTATCCAACTATTAA TTCAGTTTATATCGAATCTCAAAGTACTGGAAAAAGATTTGTTTGTAATAATGATAGATC AAGAGGTGTTTCAAGTCAAGGTCAAGGTTGCTTGGAAATGGCATTACATAGAAGTTTAAC TTATGAAGATGGTAAAGGTTTAGAAATTCCTGCAATTGATGAATCCTCAATTAATGCACG TTTTGAATGTTATTTAGATGAAGTACCATCAAATTCACAACAATCGAATGGTAGTGGTGG TGGTGATGATATTAGAAAACAATCAATTAATTATCAACATAAATTCCAAATTTATCAAGG TCAAGATTCTTCTTATATGTCTTCAAAATCTTTTATGTTAAAACCATTACCAGAGTTTAT TCATATTCTATCAATGGAAAGATCTGGTCCTCGTTCAATTAAATTAAGAATTCATAATAT TGAAAATAATAATCAATCTCCAATCACTTTTGATTTAAATGGCTTATTCTCTTTTATCAA ATCAATTAAATCAATTAAAGAATATAATTTATCTTTAATCAATAGATTCGTTGATAATAA TATTGATAATATTATTTCTTCTCATCGTTCAATTGTTGGAAAAAATCTTTTCCCTATTAA AGATACTCCAACTCGTTTCAACCCAATTAATACAAAACAAACTAAAATTACCTTATATCC ATCAGAAATTAAAGCAATGAAATTACTTATCATTAAAATTA
Length of 3' end seq.	761
Connected seq. ID	CHG235P
Connected seq.	>CHG235P.Seq AAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATATAAT GAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTCATT AAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTGTGATTCTGGATGGAC ATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGTTCA ATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATTGGATTTTT AGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGTTAA AAATGATAGAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGCAAG TTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATTTGG AAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACCAAC ATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCA----------CA ATCAGTTGAAGGTGGTAGAGAAACTCAAAGTTATTATCCAACTATTAATTCAGTTTATAT CGAATCTCAAAGTACTGGAAAAAGATTTGTTTGTAATAATGATAGATCAAGAGGTGTTTC AAGTCAAGGTCAAGGTTGCTTGGAAATGGCATTACATAGAAGTTTAACTTATGAAGATGG TAAAGGTTTAGAAATTCCTGCAATTGATGAATCCTCAATTAATGCACGTTTTGAATGTTA TTTAGATGAAGTACCATCAAATTCACAACAATCGAATGGTAGTGGTGGTGGTGATGATAT TAGAAAACAATCAATTAATTATCAACATAAATTCCAAATTTATCAAGGTCAAGATTCTTC TTATATGTCTTCAAAATCTTTTATGTTAAAACCATTACCAGAGTTTATTCATATTCTATC AATGGAAAGATCTGGTCCTCGTTCAATTAAATTAAGAATTCATAATATTGAAAATAATAA TCAATCTCCAATCACTTTTGATTTAAATGGCTTATTCTCTTTTATCAAATCAATTAAATC AATTAAAGAATATAATTTATCTTTAATCAATAGATTCGTTGATAATAATATTGATAATAT TATTTCTTCTCATCGTTCAATTGTTGGAAAAAATCTTTTCCCTATTAAAGATACTCCAAC TCGTTTCAACCCAATTAATACAAAACAAACTAAAATTACCTTATATCCATCAGAAATTAA AGCAATGAAATTACTTATCATTAAAATTA
Length of connected seq.	1339
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas