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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHG227
Library CH
(Link to library)
Clone ID CHG227
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID CHG227P
(Link to Original site)
Representative DNA sequence 
>CHG227 (CHG227Q) /CSM/CH/CHG2-B/CHG227Q.Seq.d/
AATATATTTTTTTTTAATTCTATCTTTTTTTTTAAAATTTTTTTTTTTTAAAAAAAAAAA
TNGAAATAATTTAATCNCAAATAATAATAATAATTNTAAAAATAATANCCNCCCGTTAAA
TTTTTTTTNAANAXXXXXXXXXXCTTCTCCATTAATTATGAGTATTTGGACTGTACCCAA
TCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTAC
CAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTG
GTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTT
TTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTA
AAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAA
AGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATG
CTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAAT
CTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATA
TCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTT
TGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAA
TGGCTCTTCGTCAAAGTGAAAAACAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
IYFFLILSFFLKFFFFKKKNXNNLIXNNNNNXKNNXXPLNFFXX---

---SPLIMSIWTVPNRCKRSNHFHSRRYDSCNGVTKSHSIYDS*sqetl*sr*ewsitlg
rsy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketssl
*sfpsn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgyde
cct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*kt
Translated Amino Acid sequence (All Frames) 
Frame A:
nifffnsifffkifff*kkkxk*fnxk****x*k*xppvkffxx---

---llh*l*vfglypivvkdpiifilvgmipvmvlprviqymilrakrpyeagksgpslw
veatdlwraeqtffgfagtyisswregsasivkllkarkisrhklamwnwkrdfvkkpvv
cevfrqtklvnendnaqessgkhkaeqsfrtsnkesdtiknsrlflpniilfvvnilamm
savlrfncfqndmwllvvvagfsfstlwhlwsfipmalrqsekq

Frame B:
IYFFLILSFFLKFFFFKKKNXNNLIXNNNNNXKNNXXPLNFFXX---

---fsinyeyldctqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg
*kllifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*f
vkfsvklnwsmkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**
vlyldlivskmicgfwls*lvslslpygiyglsfqwlfvkvknn

Frame C:
yiff*fylff*nffflkkkxeii*sqiiiiixkiixxr*iffx---

---SPLIMSIWTVPNRCKRSNHFHSRRYDSCNGVTKSHSIYDS*sqetl*sr*ewsitlg
rsy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketssl
*sfpsn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgyde
cct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*kt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL139 (SHL139Q) /CSM/SH/SHL1-B/SHL139Q.Seq.d/                       1316   0.0
SHK670 (SHK670Q) /CSM/SH/SHK6-C/SHK670Q.Seq.d/                       1316   0.0
SHK160 (SHK160Q) /CSM/SH/SHK1-C/SHK160Q.Seq.d/                       1316   0.0
SHJ892 (SHJ892Q) /CSM/SH/SHJ8-D/SHJ892Q.Seq.d/                       1316   0.0
SHG583 (SHG583Q) /CSM/SH/SHG5-D/SHG583Q.Seq.d/                       1316   0.0
CHI835 (CHI835Q) /CSM/CH/CHI8-B/CHI835Q.Seq.d/                       1316   0.0
CHG847 (CHG847Q) /CSM/CH/CHG8-B/CHG847Q.Seq.d/                       1316   0.0
CHG227 (CHG227Q) /CSM/CH/CHG2-B/CHG227Q.Seq.d/                       1316   0.0
CHG123 (CHG123Q) /CSM/CH/CHG1-A/CHG123Q.Seq.d/                       1316   0.0
CHE895 (CHE895Q) /CSM/CH/CHE8-D/CHE895Q.Seq.d/                       1316   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds.  1251   0.0    2
AP006429|AP006429.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT17D07, TM0322.    36   2.3    4
BM920809|BM920809.1 AGENCOURT_6705872 NIH_MGC_115 Homo sapiens cDNA clone IMAGE:5752058 5', mRNA sequence.    32   2.4    3
AC125263|AC125263.4 Mus musculus chromosome 6 clone RP24-327I4 map 6, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44   3.5    1
AC119192|AC119192.3 Mus musculus clone RP24-178H23, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44   3.5    1
AC125647|AC125647.5 Rattus norvegicus clone CH230-231J3, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44   3.5    1
AC098306|AC098306.4 Rattus norvegicus clone CH230-1N5, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44   3.5    1
AC090647|AC090647.6 Genomic sequence for Mus musculus, clone RP23-252I12, complete sequence.    44   3.5    1
AC146054|AC146054.3 Pan troglodytes BAC clone RP43-78A13 from 7, complete sequence.    36   5.4    4
BQ417022|BQ417022.1 ik40g04.y1 HR85 islet Homo sapiens cDNA clone IMAGE:5783599 5', mRNA sequence.    40   6.0    2
dna update 2004.10. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U...   425   e-119
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl...    40   0.084
CP001048_907(CP001048|pid:none) Yersinia pseudotuberculosis PB1/...    35   2.1
CP001025_1222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    35   2.1
protein update 2009. 4. 1
PSORT 

 psg: 1.00  gvh: 0.58  alm: 0.30  top: 0.73  tms: 0.07  mit: 0.46  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHG227 is nuc
5' end seq. ID CHG227F
5' end seq. 
>CHG227F.Seq
AATATATTTTTTTTTAATTCTATCTTTTTTTTTAAAATTTTTTTTTTTTAAAAAAAAAAA
TNGAAATAATTTAATCNCAAATAATAATAATAATTNTAAAAATAATANCCNCCCGTTAAA
TTTTTTTTNAANANNNNNNNNNN
Length of 5' end seq. 143
3' end seq. ID CHG227Z
3' end seq. 
>CHG227Z.Seq
NNNNNNNNNNCTTCTCCATTAATTATGAGTATTTGGACTGTACCCAATCGTTGTAAAAGA
TCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCA
ATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTG
GGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTA
TATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGAT
TAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGT
TTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAG
TGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAA
AAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGAT
GAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGC
TGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCA
AAGTGAAAAACAAT
Length of 3' end seq. 674
Connected seq. ID CHG227P
Connected seq. 
>CHG227P.Seq
AATATATTTTTTTTTAATTCTATCTTTTTTTTTAAAATTTTTTTTTTTTAAAAAAAAAAA
TNGAAATAATTTAATCNCAAATAATAATAATAATTNTAAAAATAATANCCNCCCGTTAAA
TTTTTTTTNAANA----------CTTCTCCATTAATTATGAGTATTTGGACTGTACCCAA
TCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTAC
CAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTG
GTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTT
TTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTA
AAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAA
AGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATG
CTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAAT
CTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATA
TCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTT
TGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAA
TGGCTCTTCGTCAAAGTGAAAAACAAT
Length of connected seq. 797
Full length Seq ID -
Full length Seq. -
Length of full length seq. -