CHG221 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHG221
Library	CH (Link to library)
Clone ID	CHG221 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16583-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHG2-A/CHG221Q.Seq.d/
Representative seq. ID	CHG221P (Link to Original site)
Representative DNA sequence	>CHG221 (CHG221Q) /CSM/CH/CHG2-A/CHG221Q.Seq.d/ ATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATG TGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGG TGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGT GTAACAACTCACCTGCCAAATGGACTANCCCTGAAAATGGATGACGCTAGCGGTGGATGG TCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGT AACGTAGAAGCTTGAATGCGAATTCNAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTA GTANCXXXXXXXXXXGCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGATCNTTCGATGT CGGCTCTTCTTATCATTGTGAAACAGAATTCACAAAGTGTTGGATTGTTCACCCACTAAC AAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTC AATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTG GTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTG AACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATG TTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAA TCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTAT ATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAA GCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATTAGTTCTTAAAATGGC AAACTGTTGTAAATGCTGCAAAACTAAAGACAGCTGCAACTGTTGTAAAGATAGTTGTTC ATGTCCAAAAGAACAACAAATAGAATGTAAATGCTCTTCATGCTCATGTGAAAACACATG TAACAAAACATGTGGATGGACAAAAAATGTGTCCAAAATA
sequence update	2002.10.25
Translated Amino Acid sequence	vqkigalsgpflvsrtgdvgtkywdktsnih*ipqkvlvhdsrtvamevgirgvc nnspakwtxpengrrwmvdaqslkeviilltcrkarRRSLNANSSGVVFSADLDGS X--- ---SQALIATLLFDXSMSALLIIVKQNSQSVGLFTHqgtagfrpsdrlvlpyccqlf a**hdlvreelscritglvyltk*paatirwimaerlvrihsrnanqmlsvnvvg nirllvgdhfqltiliavtlqfpsgycggwlnsnlyprsaqlfdcrrlsnelgavsfr vafsyeglrlfhflkwqtvvnaaklktaatvvkivvhvqknnk*nvnalhahvkthvtk hvdgqkmcpk
Translated Amino Acid sequence (All Frames)	Frame A: mcnekellvghfwaelamwvepnigirrltftnryhkrcfiktagrwpwksvsakec vtthlpnglxlkmddasggwsmpnrkk*yfrvgrregnveamrixvelslvqilmv v--- ---aakrsrrcflixrcrlflslnrihkvldcsptnkerelgldrretgfyptvvnc lrnssmiyernchagslvcrfiqnsdlplpsvgwlnasksesiletqtkcfrvml* vtlgcwwgttfnfkpydsllhcsflpvivvggiliyilvplnssivddyqmnvlas ersvtrggfsissngkllmlqnrqlqllrlfmskrttnrmmlfmlmkhmq nmwmdkkcvqn Frame B: camknrsswaifgkqnwrcglnqilgdvhslidttkgvsslrqqdgghgsryplrsv qltcqmdxpkwmtlavdgrcpivkrsdntfnvegvkvtklecefxwsclcrsw x--- ---qpsahsdaafsfdvgssyhceteftkcwivhpltrnvswvtvvrqvsftlllsiv cvivafstrgtvmpdhwsvglfdkivtcryhpldngtplsqnpfkrkpnalececcr hvvgggplstlnhminrcytavsfrllwwvakffissfrstlrlttiktrccklp ssvqlrgveafplvlkmancckccktkdscncckdscscpkeqqieckcsscscentcnk tcgwtknvski Frame C: vqkigalsgpflvsrtgdvgtkywdktsnih*ipqkvlvhdsrtvamevgirgvc nnspakwtxpengrrwmvdaqslkeviilltcrkarRRSLNANSSGVVFSADLDGS X--- ---SQALIATLLFDXSMSALLIIVKQNSQSVGLFTHqgtagfrpsdrlvlpyccqlf a**hdlvreelscritglvyltk*paatirwimaerlvrihsrnanqmlsvnvvg nirllvgdhfqltiliavtlqfpsgycggwlnsnlyprsaqlfdcrrlsnelgavsfr vafsyeglrlfhflkwqtvvnaaklktaatvvkivvhvqknnk*nvnalhahvkthvtk hvdgqkmcpk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHG221 (CHG221Q) /CSM/CH/CHG2-A/CHG221Q.Seq.d/ 2137 0.0 SHG223 (SHG223Q) /CSM/SH/SHG2-A/SHG223Q.Seq.d/ 1140 0.0 VHD686 (VHD686Q) /CSM/VH/VHD6-D/VHD686Q.Seq.d/ 1138 0.0 SFJ730 (SFJ730Q) /CSM/SF/SFJ7-B/SFJ730Q.Seq.d/ 1134 0.0 AHE287 (AHE287Q) /CSM/AH/AHE2-D/AHE287Q.Seq.d/ 1134 0.0 VHK875 (VHK875Q) /CSM/VH/VHK8-D/VHK875Q.Seq.d/ 1132 0.0 VHD592 (VHD592Q) /CSM/VH/VHD5-D/VHD592Q.Seq.d/ 1132 0.0 SHA880 (SHA880Q) /CSM/SH/SHA8-D/SHA880Q.Seq.d/ 1132 0.0 SFC338 (SFC338Q) /CSM/SF/SFC3-B/SFC338Q.Seq.d/ 1132 0.0 CHI557 (CHI557Q) /CSM/CH/CHI5-C/CHI557Q.Seq.d/ 1132 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AY171066\|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 1130 0.0 1 AC136838\|AC136838.19 Medicago truncatula clone mth1-5j15, WORKING DRAFT SEQUENCE, 14 unordered pieces. 248 0.0 10 X00601\|X00601.1 Dictyostelium discoideum ribosomal RNA gene. 692 0.0 2 AC151591\|AC151591.1 Nematostella vectensis clone JGIAFIN-297A8, WORKING DRAFT SEQUENCE, 3 unordered pieces. 240 0.0 9 AC121240\|AC121240.25 Medicago truncatula clone mth1-51o19, WORKING DRAFT SEQUENCE, 12 unordered pieces. 248 0.0 9 AC150267\|AC150267.2 Zea mays clone ZMMBBc0319N15, * SEQUENCING IN PROGRESS , 13 unordered pieces. 248 0.0 9 AL158197\|AL158197.26 Human DNA sequence SEQUENCING IN PROGRESS * from clone RP11-368H14. 234 0.0 9 AF289037\|AF289037.1 Guillardia theta 28S ribosomal RNA gene, complete sequence. 240 e-131 6 AF342787\|AF342787.1 Chordodes morgani internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 248 e-129 6 AB101612\|AB101612.1 Arca ventricosa gene for ITS2, 28S rRNA, partial sequence, country:Japan: Okinawa (Ie island). 248 e-129 6
dna update	2004.10. 5
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value EU430725_1(EU430725\|pid:none) Cupressus sempervirens clone CYPLP... 97 1e-18 CP000497_644(CP000497\|pid:none) Pichia stipitis CBS 6054 chromos... 60 7e-14 EU955547_1(EU955547\|pid:none) Zea mays clone 1536647 hypothetica... 45 0.006 AY436773_1(AY436773\|pid:none) Pyrus communis putative senescence... 42 0.037 U12823_1(U12823\|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo... 35 0.55 EF192055_1(EF192055\|pid:none) Trichosanthes dioica clone TDM01 p... 35 3.4 (P15114) RecName: Full=Metallothionein-2; Short=MT-2; A... 35 4.5 AK230153_1(AK230153\|pid:none) Arabidopsis thaliana mRNA for hypo... 34 7.7 EU244380_1(EU244380\|pid:none) Haliotis diversicolor clone HDr4CJ... 34 7.7
protein update	2009. 4. 1
PSORT	psg: 0.89 gvh: 0.59 alm: 0.28 top: 0.77 tms: 0.07 mit: 0.44 mip: 0.02 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.34 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 36.0 %: cytoplasmic 36.0 %: nuclear 12.0 %: mitochondrial 4.0 %: Golgi 4.0 %: plasma membrane 4.0 %: vesicles of secretory system 4.0 %: endoplasmic reticulum >> prediction for CHG221 is cyt
5' end seq. ID	CHG221F
5' end seq.	>CHG221F.Seq ATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATG TGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGG TGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGT GTAACAACTCACCTGCCAAATGGACTANCCCTGAAAATGGATGACGCTAGCGGTGGATGG TCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGT AACGTAGAAGCTTGAATGCGAATTCNAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTA GTANCNNNNNNNNNN
Length of 5' end seq.	375
3' end seq. ID	CHG221Z
3' end seq.	>CHG221Z.Seq NNNNNNNNNNGCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGATCNTTCGATGTCGGCT CTTCTTATCATTGTGAAACAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGA ACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTG TTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTG TAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGC CTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTA GGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCT GTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCT CGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTC CGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATTAGTTCTTAAAATGGCAAACT GTTGTAAATGCTGCAAAACTAAAGACAGCTGCAACTGTTGTAAAGATAGTTGTTCATGTC CAAAAGAACAACAAATAGAATGTAAATGCTCTTCATGCTCATGTGAAAACACATGTAACA AAACATGTGGATGGACAAAAAATGTGTCCAAAATA
Length of 3' end seq.	755
Connected seq. ID	CHG221P
Connected seq.	>CHG221P.Seq ATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATG TGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGG TGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGT GTAACAACTCACCTGCCAAATGGACTANCCCTGAAAATGGATGACGCTAGCGGTGGATGG TCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGT AACGTAGAAGCTTGAATGCGAATTCNAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTA GTANC----------GCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGATCNTTCGATGT CGGCTCTTCTTATCATTGTGAAACAGAATTCACAAAGTGTTGGATTGTTCACCCACTAAC AAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTC AATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTG GTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTG AACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATG TTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAA TCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTAT ATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAA GCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATTAGTTCTTAAAATGGC AAACTGTTGTAAATGCTGCAAAACTAAAGACAGCTGCAACTGTTGTAAAGATAGTTGTTC ATGTCCAAAAGAACAACAAATAGAATGTAAATGCTCTTCATGCTCATGTGAAAACACATG TAACAAAACATGTGGATGGACAAAAAATGTGTCCAAAATA
Length of connected seq.	1110
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas