CHG203
Library CH
(Link to library)
Clone ID CHG203
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16061-1|Contig-U16365-1
Original site URL
Representative seq. ID CHG203P
(Link to Original site)
Representative DNA sequence
>CHG203 (CHG203Q) /CSM/CH/CHG2-A/CHG203Q.Seq.d/
ATGACAATATTTGATGCAGTTGCAAAAGCAATTGTTCCTTCAGTTACACATGCCATAGAA
GAAAATAATAAAAATAGAGAAATACAAGAAAAAAGACAAAAAGAAACTAAAGATAGAAAT
GATAGAATGGTTCAAAATCAAAAGGATAGAAAAGAAATGATTGGATTGACCAATGAAAAA
CAAACTTATTCAAATTCAGTCAAAAATGCAAAAACTGACAATGAAAAAAAAATATTTCAA
AATTTATTGGATAAAACAAATTCAAGAATAACTGATATTGAAAAAAGACAAAGTGGTGAT
ATCTCTGAATATAAAAGACTTGTTGAAGAAAATAAAAATTTGGAAAAAAATGTTAAAGAA
TTCAAAGAAGTTATGAAACCCTTCGAGGAAAATGATATAATTCATAATCCTAAACATGTT
GATGAAGACACAATAGAAGAGAATAAAAAAAAATGGAAGXXXXXXXXXXTGATGGNGGTG
ATAATNNTNAANATGNTGGTGATGGNGNNCANGATGGTGGTGATGATANNCACNNTGGTG
GTCATGATAATCATNATGCNGNTGATGCCCATGATGGTGGTGATNATGATCANGATGGTG
ATGGCANTNATGATNCGTGATGATGNNNATGANTGGTGGTGATGATNNNCNTGATGGCGG
TGANGATGGTCNAGATGATGGTGATCATGNNCAANATGGTNNNNATNNNNNTGATGGTGG
TGATNACNNTCATGATGGTGATNNNNANNGNCNTGATNGTGGTGAANATNNTCAANATAG
TGGTGAANATGNTCANGATGGTNGGTGATNNCGGNCANGATGGTCNTGANNATGGCCAAG
ATGGTNGTGANNGCGGTCAAGATGGTNNAGNTNATCAAGANGGTNGTGANGATAACCAAG
ACGAGTGGTGANGATAACCANGACCCGTGGTNAAGATNGNCGNGATGGTGGTNAAAATNA
CCAAGGTGATGAANATNGCCGNGATGTTGATGAACNCANTCAAGATGGTGA
sequence update 2002.10.25
Translated Amino Acid sequence
MTIFDAVAKAIVPSVTHAIEENNKNREIQEKRQKETKDRNDRMVQNQKDRKEMIGLTNEK
QTYSNSVKNAKTDNEKKIFQNLLDKTNSRITDIEKRQSGDISEYKRLVEENKNLEKNVKE
FKEVMKPFEENDIIHNPKHVDEDTIEENKKKWK---

---MXVIXXXMXVMXXXMVVMIXTXVVMIIXMXXMPMMVVXMIXMVMAXMXRDDXXXWW*
*xx*wr*xwsr*w*sxxxwxxxx*ww*xxs*w*xxxx*xw*xxsx*w*xxsxwxvxxxxm
vxxmakmvvxavkmvxxikxvvxitktsgxdnxdpwxrxxxwwxkxpr**xxpxc**txs
rw*


Translated Amino Acid sequence (All Frames)
Frame A:
MTIFDAVAKAIVPSVTHAIEENNKNREIQEKRQKETKDRNDRMVQNQKDRKEMIGLTNEK
QTYSNSVKNAKTDNEKKIFQNLLDKTNSRITDIEKRQSGDISEYKRLVEENKNLEKNVKE
FKEVMKPFEENDIIHNPKHVDEDTIEENKKKWK---

---*wx**xxxxw*wxxxww**xxxwws**sxcx*cp*ww*x*sxw*wxx*xvmmxmxgg
ddxxdggxdgxddgdhxqxgxxxxdggdxxhdgdxxxxdxgexxqxsgexxxdgx*xrxx
ws*xwprwx*xrsrwxxxsrxx*x*prrvvxitxtrgxdxrdggxnxqgdexxrdvdexx
qdg

Frame B:
*qylmqlqkqlflqlhmp*kkiikiekykkkdkkklkiemiewfkikriekk*ld*pmkn
kliqiqskmqkltmkkkyfkiywikqiqe*lilkkdkvvislnikdllkkikiwkkmlkn
skkl*npsrkmi*fiilnmlmktq*krikkng---

---dggdnxxxxgdgxxdggddxhxgghdnhxaxdahdggdxdxdgdgxxdx**xx*xvv
mxxxmavxmvxmmvimxxmvxxxxmvvxtxmmvxxxxxxvvxxxxivvxmxxmvgdxgxd
gxxxgqdgxxxgqdgxxxqxgxxdnqdew*x*pxpvvkxxxmvvkxtkvmxxaxmlmnxx
kmv

Frame C:
dni*cscksncsfsytchrrk**k*rntrkktkrn*r*k**ngskskg*krndwidq*kt
nlfkfsqkckn*q*kkniskfig*nkfknn*y*kktkw*yl*i*ktc*rk*kfgkkc*ri
qrsyetlrgk*yns*s*tc**rhnrre*kkme---

---MXVIXXXMXVMXXXMVVMIXTXVVMIIXMXXMPMMVVXMIXMVMAXMXRDDXXXWW*
*xx*wr*xwsr*w*sxxxwxxxx*ww*xxs*w*xxxx*xw*xxsx*w*xxsxwxvxxxxm
vxxmakmvvxavkmvxxikxvvxitktsgxdnxdpwxrxxxwwxkxpr**xxpxc**txs
rw*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHG203 (CHG203Q) /CSM/CH/CHG2-A/CHG203Q.Seq.d/ 515 e-145
SHL229 (SHL229Q) /CSM/SH/SHL2-B/SHL229Q.Seq.d/ 474 e-132
SHJ202 (SHJ202Q) /CSM/SH/SHJ2-A/SHJ202Q.Seq.d/ 474 e-132
SHG364 (SHG364Q) /CSM/SH/SHG3-C/SHG364Q.Seq.d/ 474 e-132
SHG247 (SHG247Q) /CSM/SH/SHG2-B/SHG247Q.Seq.d/ 474 e-132
SHA777 (SHA777Q) /CSM/SH/SHA7-D/SHA777Q.Seq.d/ 474 e-132
SFG844 (SFG844Q) /CSM/SF/SFG8-B/SFG844Q.Seq.d/ 474 e-132
SFF411 (SFF411Q) /CSM/SF/SFF4-A/SFF411Q.Seq.d/ 474 e-132
SFD285 (SFD285Q) /CSM/SF/SFD2-D/SFD285Q.Seq.d/ 474 e-132
CHP382 (CHP382Q) /CSM/CH/CHP3-D/CHP382Q.Seq.d/ 474 e-132

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BF566802|BF566802.1 UI-R-BJ0p-afm-d-10-0-UI.r1 UI-R-BJ0p Rattus norvegicus cDNA cloneUI-R-BJ0p-afm-d-10-0-UI 5', mRNA sequence. 40 1e-05 4
AC093519|AC093519.3 Homo sapiens chromosome 16 clone RP11-107C10, complete sequence. 38 6e-05 12
CQ342489|CQ342489.1 Sequence 16583 from Patent WO0157275. 38 1e-04 5
CQ305288|CQ305288.1 Sequence 16393 from Patent WO0186003. 38 1e-04 5
CQ268254|CQ268254.1 Sequence 16515 from Patent WO0157277. 38 1e-04 5
CQ230106|CQ230106.1 Sequence 16945 from Patent WO0157273. 38 1e-04 5
CQ206688|CQ206688.1 Sequence 8965 from Patent WO0157271. 38 1e-04 5
CQ182292|CQ182292.1 Sequence 13688 from Patent WO0157274. 38 1e-04 5
CQ146881|CQ146881.1 Sequence 16903 from Patent WO0157276. 38 1e-04 5
CQ108252|CQ108252.1 Sequence 17111 from Patent WO0157272. 38 1e-04 5
dna update 2004.10. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04929) Histidine-rich glycoprotein precursor. &KGZQHL(A22692)... 40 4e-08
(Q8MP30) RecName: Full=Uncharacterized histidine-rich protein DD... 40 3e-07
BC122571_1(BC122571|pid:none) Bos taurus ubiquitin specific pept... 45 0.003
AF238886_1(AF238886|pid:none) Bacillus cereus strain ATCC 11778 ... 35 0.024
AF337555_1(AF337555|pid:none) Candida albicans lysine/glutamic a... 40 0.16
FM992690_684(FM992690|pid:none) Candida dubliniensis CD36 chromo... 40 0.16
AE001362_130(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.16
CP000123_803(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 40 0.16
EF026246_1(EF026246|pid:none) Steinernema carpocapsae Ahn-4 mRNA... 40 0.16
AM270016_23(AM270016|pid:none) Aspergillus niger contig An02c021... 39 0.21
protein update 2009. 4. 1
PSORT

psg: 0.84 gvh: 0.54 alm: 0.28 top: 0.50 tms: 0.07 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
20.0 %: nuclear
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for CHG203 is cyt

5' end seq. ID CHG203F
5' end seq.
>CHG203F.Seq
ATGACAATATTTGATGCAGTTGCAAAAGCAATTGTTCCTTCAGTTACACATGCCATAGAA
GAAAATAATAAAAATAGAGAAATACAAGAAAAAAGACAAAAAGAAACTAAAGATAGAAAT
GATAGAATGGTTCAAAATCAAAAGGATAGAAAAGAAATGATTGGATTGACCAATGAAAAA
CAAACTTATTCAAATTCAGTCAAAAATGCAAAAACTGACAATGAAAAAAAAATATTTCAA
AATTTATTGGATAAAACAAATTCAAGAATAACTGATATTGAAAAAAGACAAAGTGGTGAT
ATCTCTGAATATAAAAGACTTGTTGAAGAAAATAAAAATTTGGAAAAAAATGTTAAAGAA
TTCAAAGAAGTTATGAAACCCTTCGAGGAAAATGATATAATTCATAATCCTAAACATGTT
GATGAAGACACAATAGAAGAGAATAAAAAAAAATGGAAGNNNNNNNNNN
Length of 5' end seq. 469
3' end seq. ID CHG203Z
3' end seq.
>CHG203Z.Seq
NNNNNNNNNNTGATGGNGGTGATAATNNTNAANATGNTGGTGATGGNGNNCANGATGGTG
GTGATGATANNCACNNTGGTGGTCATGATAATCATNATGCNGNTGATGCCCATGATGGTG
GTGATNATGATCANGATGGTGATGGCANTNATGATNCGTGATGATGNNNATGANTGGTGG
TGATGATNNNCNTGATGGCGGTGANGATGGTCNAGATGATGGTGATCATGNNCAANATGG
TNNNNATNNNNNTGATGGTGGTGATNACNNTCATGATGGTGATNNNNANNGNCNTGATNG
TGGTGAANATNNTCAANATAGTGGTGAANATGNTCANGATGGTNGGTGATNNCGGNCANG
ATGGTCNTGANNATGGCCAAGATGGTNGTGANNGCGGTCAAGATGGTNNAGNTNATCAAG
ANGGTNGTGANGATAACCAAGACGAGTGGTGANGATAACCANGACCCGTGGTNAAGATNG
NCGNGATGGTGGTNAAAATNACCAAGGTGATGAANATNGCCGNGATGTTGATGAACNCAN
TCAAGATGGTGA
Length of 3' end seq. 552
Connected seq. ID CHG203P
Connected seq.
>CHG203P.Seq
ATGACAATATTTGATGCAGTTGCAAAAGCAATTGTTCCTTCAGTTACACATGCCATAGAA
GAAAATAATAAAAATAGAGAAATACAAGAAAAAAGACAAAAAGAAACTAAAGATAGAAAT
GATAGAATGGTTCAAAATCAAAAGGATAGAAAAGAAATGATTGGATTGACCAATGAAAAA
CAAACTTATTCAAATTCAGTCAAAAATGCAAAAACTGACAATGAAAAAAAAATATTTCAA
AATTTATTGGATAAAACAAATTCAAGAATAACTGATATTGAAAAAAGACAAAGTGGTGAT
ATCTCTGAATATAAAAGACTTGTTGAAGAAAATAAAAATTTGGAAAAAAATGTTAAAGAA
TTCAAAGAAGTTATGAAACCCTTCGAGGAAAATGATATAATTCATAATCCTAAACATGTT
GATGAAGACACAATAGAAGAGAATAAAAAAAAATGGAAG----------TGATGGNGGTG
ATAATNNTNAANATGNTGGTGATGGNGNNCANGATGGTGGTGATGATANNCACNNTGGTG
GTCATGATAATCATNATGCNGNTGATGCCCATGATGGTGGTGATNATGATCANGATGGTG
ATGGCANTNATGATNCGTGATGATGNNNATGANTGGTGGTGATGATNNNCNTGATGGCGG
TGANGATGGTCNAGATGATGGTGATCATGNNCAANATGGTNNNNATNNNNNTGATGGTGG
TGATNACNNTCATGATGGTGATNNNNANNGNCNTGATNGTGGTGAANATNNTCAANATAG
TGGTGAANATGNTCANGATGGTNGGTGATNNCGGNCANGATGGTCNTGANNATGGCCAAG
ATGGTNGTGANNGCGGTCAAGATGGTNNAGNTNATCAAGANGGTNGTGANGATAACCAAG
ACGAGTGGTGANGATAACCANGACCCGTGGTNAAGATNGNCGNGATGGTGGTNAAAATNA
CCAAGGTGATGAANATNGCCGNGATGTTGATGAACNCANTCAAGATGGTGA
Length of connected seq. 1001
Full length Seq ID -
Full length Seq. -
Length of full length seq. -