>CHG178 (CHG178Q) /CSM/CH/CHG1-D/CHG178Q.Seq.d/
XXXXXXXXXXAATAAGCATTTAGAATATTTTTCATATGAACATTTTTATGTTATTTATTG
TAAATTTTGGGAATTGGATATGGATCATGATCTCTTCATTGATAGTAATGATTTAGCAAA
ATATGGAAGTTGTAGTTTAACTCCATTAATCATTGAAAGAATTATTGCAAATTCAATATT
TACCAAACCTTTATTTGGTATTAGAAATAAAATTTNTTATCAAGATTTTGTTTGGTTTAT
ATTATCAGAAGAAGATAAAACAAGTGAAACTAGTATTGAATTTTGGTTTAGTTGTTGTGA
TTTAGATTGTGATGGATTTTTAAGTTTATATGAAATGGATACATTTTATAAGGAACAAAA
GCAGAGATTAGATTATTTGAATTTAGATCCCCCAGTATTTAAGGATCTTTTATGTCAAAT
CTTGGATATGATTAAACCAGAGGCAATTGAAAAGATTACATTGTTGGATTTAAAGAGTTC
AAAAATGGCTGGTTATTTATTCAATGTATTATTTAATATCAATAAATTNTTACAACAAGA
ATCAAAAGAATCAATCACTTGTAATCAACCAATGAGCGATTGGAATAGATTTGCTTTACA
AGAATATGAAAGAGCTTTGGCCGAAGAATCACTCTNTTATCAAGACGATGAAGACGATCA
AAATGATGACCAAGATGATGACGACCAAGATGATGACGATCAAGATGGTCATCNCCATAA
TCAATATCATCATCAAGATAATAGAATGTTAATGGGTTAAAAAAAAAATAA

---KHLEYFSYEHFYVIYCKFWELDMDHDLFIDSNDLAKYGSCSLTPLIIERIIANSIFT
KPLFGIRNKIXYQDFVWFILSEEDKTSETSIEFWFSCCDLDCDGFLSLYEMDTFYKEQKQ
RLDYLNLDPPVFKDLLCQILDMIKPEAIEKITLLDLKSSKMAGYLFNVLFNINKXLQQES
KESITCNQPMSDWNRFALQEYERALAEESLXYQDDEDDQNDDQDDDDQDDDDQDGHXHNQ
YHHQDNRMLMG*kkn

Frame A:
---isi*nifhmnifmlfivnfgnwiwimisslivmi*qnmevvv*lh*slkellqiqyl
pnlylvleikfxikilfglyyqkkikqvklvlnfglvvvi*ivmdf*vymkwihfirnks
rd*ii*i*ipqylrifyvkswi*lnqrqlkrlhcwi*rvqkwlviysmyylisinxynkn
qknqslvinq*aigidllyknmkelwpknhsxiktmktikmmtkmmttkmmtikmvixii
niiikiiec*wvkkki


Frame B:
---*afriffi*tflcyll*ilgigygs*slh****fskiwkl*fnsinh*knyckfniy
qtfiwy*k*nxlsrfclvyiirrr*nk*n*y*ilv*ll*frl*wifkfi*ngyil*gtka
eirlfefrspsi*gsfmsnlgyd*trgn*kdyivgfkefkngwlfiqcii*yq*ixttri
krinhl*stnerle*icftri*ksfgrritllsrr*rrsk**pr**rpr**rsrwssp*s
isssr**nvnglkkk*


Frame C:
---KHLEYFSYEHFYVIYCKFWELDMDHDLFIDSNDLAKYGSCSLTPLIIERIIANSIFT
KPLFGIRNKIXYQDFVWFILSEEDKTSETSIEFWFSCCDLDCDGFLSLYEMDTFYKEQKQ
RLDYLNLDPPVFKDLLCQILDMIKPEAIEKITLLDLKSSKMAGYLFNVLFNINKXLQQES
KESITCNQPMSDWNRFALQEYERALAEESLXYQDDEDDQNDDQDDDDQDDDDQDGHXHNQ
YHHQDNRMLMG*kkn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHG178 (CHG178Q) /CSM/CH/CHG1-D/CHG178Q.Seq.d/                       1459   0.0
CHP265 (CHP265Q) /CSM/CH/CHP2-C/CHP265Q.Seq.d/                       1140   0.0
CHP786 (CHP786Q) /CSM/CH/CHP7-D/CHP786Q.Seq.d/                        995   0.0
SFF662 (SFF662Q) /CSM/SF/SFF6-C/SFF662Q.Seq.d/                         42   0.012
VSF140 (VSF140Q) /CSM/VS/VSF1-B/VSF140Q.Seq.d/                         38   0.19
VSC446 (VSC446Q) /CSM/VS/VSC4-B/VSC446Q.Seq.d/                         38   0.19
VHM418 (VHM418Q) /CSM/VH/VHM4-A/VHM418Q.Seq.d/                         38   0.19
VFL847 (VFL847Q) /CSM/VF/VFL8-B/VFL847Q.Seq.d/                         38   0.19
VFK677 (VFK677Q) /CSM/VF/VFK6-D/VFK677Q.Seq.d/                         38   0.19
SSD138 (SSD138Q) /CSM/SS/SSD1-B/SSD138Q.Seq.d/                         38   0.19

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CD064424|CD064424.1 MA1-0038P-L013-F01-U.B MA1-0038 Schistosoma mansoni cDNA cloneMA1-0038P-L013-F01.B, mRNA sequence.    82   4e-18  2
AW828903|AW828903.1 ra69e06.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to SW:2ACB_HUMAN Q06189 PROTEIN PHOSPHATASE PP2A, 72 KD REGULATORY SUBUNIT ;, mRNA sequence.    76   2e-11  2
AW871512|AW871512.1 ra78g07.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to SW:2ACB_HUMAN Q06189 PROTEIN PHOSPHATASE PP2A, 72 KD REGULATORY SUBUNIT ;, mRNA sequence.    68   3e-09  2
BU608304|BU608304.1 UI-CF-FN0-aew-p-21-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone UI-CF-FN0-aew-p-21-0-UI 3', mRNA sequence.    62   5e-08  2
BP258748|BP258748.1 Homo sapiens cDNA clone: HRT04480, Sugano cDNA library, expressed in heart.    62   5e-08  2
BQ717790|BQ717790.1 AGENCOURT_8229630 Lupski_dorsal_root_ganglion Homo sapiens cDNA clone IMAGE:6184647 5', mRNA sequence.    62   8e-08  2
L12146|L12146.1 Homo sapiens protein phosphatase 2A 72 kDa regulatory subunit mRNA, complete cds.    62   2e-07  2
AL389975|AL389975.1 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 2004632.    62   3e-07  2
BC065531|BC065531.1 Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha, transcript variant 1, mRNA (cDNA clone MGC:70610 IMAGE:6161260), complete cds.    62   3e-07  2
L07590|L07590.1 Human protein phosphatase 2A 130 kDa regulatory subunit mRNA, complete cds.    62   4e-07  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC124001_1(BC124001|pid:none) Xenopus tropicalis hypothetical pr...   222   1e-56
BC100231_1(BC100231|pid:none) Xenopus laevis hypothetical protei...   222   1e-56
BC129675_1(BC129675|pid:none) Xenopus laevis cDNA clone MGC:1603...   219   7e-56
BC135043_1(BC135043|pid:none) Danio rerio im:6895423, mRNA (cDNA...   218   2e-55
EU120025_1(EU120025|pid:none) Carassius auratus protein phosphat...   218   2e-55
BX296565_2(BX296565|pid:none) Zebrafish DNA sequence from clone ...   218   2e-55
BC128675_1(BC128675|pid:none) Xenopus laevis PP2A B'' subunit PR...   218   2e-55
BC063429_1(BC063429|pid:none) Homo sapiens protein phosphatase 2...   217   4e-55
AF135016_1(AF135016|pid:none) Homo sapiens protein phosphatase 2...   216   5e-55
A47114(A47114) phosphoprotein phosphatase (EC 3.1.3.16) 2A regul...   216   6e-55

 psg: 0.75  gvh: 0.38  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CHG178 is cyt

>CHG178Z.Seq
NNNNNNNNNNAATAAGCATTTAGAATATTTTTCATATGAACATTTTTATGTTATTTATTG
TAAATTTTGGGAATTGGATATGGATCATGATCTCTTCATTGATAGTAATGATTTAGCAAA
ATATGGAAGTTGTAGTTTAACTCCATTAATCATTGAAAGAATTATTGCAAATTCAATATT
TACCAAACCTTTATTTGGTATTAGAAATAAAATTTNTTATCAAGATTTTGTTTGGTTTAT
ATTATCAGAAGAAGATAAAACAAGTGAAACTAGTATTGAATTTTGGTTTAGTTGTTGTGA
TTTAGATTGTGATGGATTTTTAAGTTTATATGAAATGGATACATTTTATAAGGAACAAAA
GCAGAGATTAGATTATTTGAATTTAGATCCCCCAGTATTTAAGGATCTTTTATGTCAAAT
CTTGGATATGATTAAACCAGAGGCAATTGAAAAGATTACATTGTTGGATTTAAAGAGTTC
AAAAATGGCTGGTTATTTATTCAATGTATTATTTAATATCAATAAATTNTTACAACAAGA
ATCAAAAGAATCAATCACTTGTAATCAACCAATGAGCGATTGGAATAGATTTGCTTTACA
AGAATATGAAAGAGCTTTGGCCGAAGAATCACTCTNTTATCAAGACGATGAAGACGATCA
AAATGATGACCAAGATGATGACGACCAAGATGATGACGATCAAGATGGTCATCNCCATAA
TCAATATCATCATCAAGATAATAGAATGTTAATGGGTTAAAAAAAAAATAA