>CHG171 (CHG171Q) /CSM/CH/CHG1-C/CHG171Q.Seq.d/
XXXXXXXXXXTTATCGATTGTAGGTTATAATTATAAAGAAGCAAAATCAAAATATCCAAA
GATTGAAGAATATTATGGTAGAGGTGTAATCTCGATTCAAAATTTTAGTGTTTTCATGTC
ACCATTACTCATGAAATATTATTTACAATANGCAGTGGATTTTAATAAAGATTTTGGTGG
TCATGTTTTNTCTGTAGCTTNTACGATTTTGAAAAGATTCTCTCAAGAGATTTTCGTTTG
GAATACATTTTATCAAGAGTTTTTCCAATTGAAATTAGCAGCTCACAACTTTTTAAATGA
TCATTACCAACAATTCTNTTCAGCAGATCAAAAGATTACACTAAGATCATTCTTTTATCC
AAATCAAAAGTTAAACTCTGAATTTGAAGATAAGACAAATTCAAACAATGATCGTTCTTT
GGTTACAGATTTCAATTATAAATTCGGTATTGAATCATATTGGAAGAAATCAATCGAGTT
GTACCATGATCCATCGATGGTTGACGATCAAAATAGAAATATTGGTTCTTCNACTCAAAC
TATTTACTCACCNCCAGATTTAGATTACTTTTCAGTTG

---SIVGYNYKEAKSKYPKIEEYYGRGVISIQNFSVFMSPLLMKYYLQXAVDFNKDFGGH
VXSVAXTILKRFSQEIFVWNTFYQEFFQLKLAAHNFLNDHYQQFXSADQKITLRSFFYPN
QKLNSEFEDKTNSNNDRSLVTDFNYKFGIESYWKKSIELYHDPSMVDDQNRNIGSSTQTI
YSPPDLDYFSV

Frame A:
---yrl*viiikkqnqniqrlknimvev*srfkilvfschhys*niiynxqwilikilvv
mfxl*lxrf*kdslkrfsfgihfiksfsn*n*qlttf*miitnnsxqqikrlh*dhsfiq
iks*tlnlkirqiqtmivlwlqisiinsvlnhigrnqssctmihrwltikieilvlxlkl
fthxqi*itfql


Frame B:
---idcrl*l*rskikiskd*rilw*rcnldskf*cfhvtitheilftixsgf**rfwws
cfxcsxydfekilsrdfrleyilsrvfpieisssqlfk*slptilfsrskdytkiillsk
skvkl*i*r*dkfkq*sffgyrfql*iry*iileeinrvvp*sidg*rsk*kywffxsny
lltxrfrllfs


Frame C:
---SIVGYNYKEAKSKYPKIEEYYGRGVISIQNFSVFMSPLLMKYYLQXAVDFNKDFGGH
VXSVAXTILKRFSQEIFVWNTFYQEFFQLKLAAHNFLNDHYQQFXSADQKITLRSFFYPN
QKLNSEFEDKTNSNNDRSLVTDFNYKFGIESYWKKSIELYHDPSMVDDQNRNIGSSTQTI
YSPPDLDYFSV

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC162 (SHC162Q) /CSM/SH/SHC1-C/SHC162Q.Seq.d/                       1090   0.0
CHG171 (CHG171Q) /CSM/CH/CHG1-C/CHG171Q.Seq.d/                       1090   0.0
AHD423 (AHD423Q) /CSM/AH/AHD4-A/AHD423Q.Seq.d/                       1090   0.0
AHB613 (AHB613Q) /CSM/AH/AHB6-A/AHB613Q.Seq.d/                       1082   0.0
SLE569 (SLE569Q) /CSM/SL/SLE5-C/SLE569Q.Seq.d/                        955   0.0
AHP232 (AHP232Q) /CSM/AH/AHP2-B/AHP232Q.Seq.d/                        821   0.0
VSA754 (VSA754Q) /CSM/VS/VSA7-C/VSA754Q.Seq.d/                         38   0.14
VHP546 (VHP546Q) /CSM/VH/VHP5-B/VHP546Q.Seq.d/                         38   0.14
VHB747 (VHB747Q) /CSM/VH/VHB7-B/VHB747Q.Seq.d/                         38   0.14
VFL190 (VFL190Q) /CSM/VF/VFL1-D/VFL190Q.Seq.d/                         38   0.14

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116921|AC116921.2 Dictyostelium discoideum chromosome 2 map 4624505-4657775 strain AX4, complete sequence.  1090   0.0    1
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           40   5e-04  17
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          32   0.043  18
BX927195|BX927195.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-124E6.    32   0.046  10
AF368890|AF368890.1 Drosophila buzzatii strain j-19 chromosomal inversion 2j in the 2j arrangement, proximal breakpoint sequence.    36   0.20   2
AL929560|AL929560.14 Zebrafish DNA sequence from clone CH211-241O15 in linkage group 17.    40   0.21   7
CE110733|CE110733.1 tigr-gss-dog-17000324529929 Dog Library Canis familiaris genomic, genomic survey sequence.    40   0.27   2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           34   0.31   24
AP003360|AP003360.3 Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome, section 3/9.    34   0.36   9
AJ529832|AJ529832.1 Arabidopsis thaliana T-DNA flanking sequence, left border, clone  195C10.    46   0.63   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001302_29(CP001302|pid:none) Borrelia garinii PBr plasmid PBr_...    36   0.63
CU179680_131(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo...    35   1.4
CP001425_2(CP001425|pid:none) Borrelia burgdorferi 64b plasmid 6...    35   1.8
CP001454_35(CP001454|pid:none) Borrelia burgdorferi WI91-23 plas...    35   1.8
CP001567_2(CP001567|pid:none) Borrelia burgdorferi Bol26 plasmid...    34   2.4
CP001207_20(CP001207|pid:none) Borrelia burgdorferi ZS7 plasmid ...    34   2.4
CP000563_65(CP000563|pid:none) Shewanella baltica OS155, complet...    34   2.4
CP001314_23(CP001314|pid:none) Borrelia garinii Far04 plasmid Fa...    34   2.4
L31845_1(L31845|pid:none) Bacillus subtilis UDP-N-acetylmuramate...    34   3.1
AE017354_1266(AE017354|pid:none) Legionella pneumophila subsp. p...    34   3.1

 psg: 0.43  gvh: 0.36  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CHG171 is nuc

>CHG171Z.Seq
NNNNNNNNNNTTATCGATTGTAGGTTATAATTATAAAGAAGCAAAATCAAAATATCCAAA
GATTGAAGAATATTATGGTAGAGGTGTAATCTCGATTCAAAATTTTAGTGTTTTCATGTC
ACCATTACTCATGAAATATTATTTACAATANGCAGTGGATTTTAATAAAGATTTTGGTGG
TCATGTTTTNTCTGTAGCTTNTACGATTTTGAAAAGATTCTCTCAAGAGATTTTCGTTTG
GAATACATTTTATCAAGAGTTTTTCCAATTGAAATTAGCAGCTCACAACTTTTTAAATGA
TCATTACCAACAATTCTNTTCAGCAGATCAAAAGATTACACTAAGATCATTCTTTTATCC
AAATCAAAAGTTAAACTCTGAATTTGAAGATAAGACAAATTCAAACAATGATCGTTCTTT
GGTTACAGATTTCAATTATAAATTCGGTATTGAATCATATTGGAAGAAATCAATCGAGTT
GTACCATGATCCATCGATGGTTGACGATCAAAATAGAAATATTGGTTCTTCNACTCAAAC
TATTTACTCACCNCCAGATTTAGATTACTTTTCAGTTG