CHG150
Library CH
(Link to library)
Clone ID CHG150
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16423-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHG150 (CHG150Q) /CSM/CH/CHG1-C/CHG150Q.Seq.d/
XXXXXXXXXXAGTNCATTCAACANNTNTTACAATAGTCATCACAANAGAGATGATAACCG
TGGTGGTTATGGTGGTGGTGGTGGTGGNAATGGAGGNTGCAGTAACANCNGTAATGATAN
AANAGAAGATANATCNGATTACNCAATGCATCACCCATACTTTAGCNNCAATGGTGGTTC
ATA
sequence update 2002. 9.10
Translated Amino Acid sequence
---VHSTXXTIVITXEMITVVVMVVVVVXMEXAVTXVMIXXKIXXITQCITHTLAXMVVH


Translated Amino Acid sequence (All Frames)
Frame A:
---VHSTXXTIVITXEMITVVVMVVVVVXMEXAVTXVMIXXKIXXITQCITHTLAXMVVH


Frame B:
---xiqxxlq*ssqxr**pwwlwwwwwwxwrxq*xx**xxrrxixlxnaspil*xqwwfi


Frame C:
---xfnxxynshhxrddnrggyggggggnggcsnxxndxxedxsdyxmhhpyfsxnggs


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHG150 (CHG150Q) /CSM/CH/CHG1-C/CHG150Q.Seq.d/ 129 2e-29
VHQ404 (VHQ404Q) /CSM/VH/VHQ4-A/VHQ404Q.Seq.d/ 121 4e-27
VHP734 (VHP734Q) /CSM/VH/VHP7-B/VHP734Q.Seq.d/ 121 4e-27
VHP681 (VHP681Q) /CSM/VH/VHP6-D/VHP681Q.Seq.d/ 121 4e-27
VHP588 (VHP588Q) /CSM/VH/VHP5-D/VHP588Q.Seq.d/ 121 4e-27
VHP121 (VHP121Q) /CSM/VH/VHP1-A/VHP121Q.Seq.d/ 121 4e-27
VHP118 (VHP118Q) /CSM/VH/VHP1-A/VHP118Q.Seq.d/ 121 4e-27
VHO596 (VHO596Q) /CSM/VH/VHO5-D/VHO596Q.Seq.d/ 121 4e-27
VHO585 (VHO585Q) /CSM/VH/VHO5-D/VHO585Q.Seq.d/ 121 4e-27
VHO165 (VHO165Q) /CSM/VH/VHO1-C/VHO165Q.Seq.d/ 121 4e-27

own update 2002. 9.28
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 575,486
Number of Sequences: 39035572
Number of extensions: 575486
Number of successful extensions: 138133
Number of sequences better than 10.0: 0
length of query: 183
length of database: [,080,778,966
effective HSP length: 22
effective length of query: 161
effective length of database: Z,221,996,382
effective search space: 6797741417502
effective search space used: 6797741417502
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2004.10. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54QS3) RecName: Full=Probable ATP-dependent RNA helicase ddx3;... 70 3e-11

protein update 2009. 1. 1
PSORT

psg: 0.88 gvh: 0.51 alm: 0.18 top: 0.50 tms: 0.07 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: nuclear
20.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for CHG150 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHG150Z
3' end seq.
>CHG150Z.Seq
NNNNNNNNNNAGTNCATTCAACANNTNTTACAATAGTCATCACAANAGAGATGATAACCG
TGGTGGTTATGGTGGTGGTGGTGGTGGNAATGGAGGNTGCAGTAACANCNGTAATGATAN
AANAGAAGATANATCNGATTACNCAATGCATCACCCATACTTTAGCNNCAATGGTGGTTC
ATA
Length of 3' end seq. 183
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -