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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHG108
Library CH
(Link to library)
Clone ID CHG108
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14307-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHG108 (CHG108Q) /CSM/CH/CHG1-A/CHG108Q.Seq.d/
ACAAAACACCTTGTCTTTCCACAGCAAAAAAAAAAAAAAAAAAAACCAAACCNTTTAAAA
AAAAAAATTTTTAAANNAAAAAAAAAAAAAAAAAAAANGGGGGGGGGGGAAAAAAAAAAA
AAAAAAAAAAAAANCCCCCNNTTAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
TKHLVFPQQKKKKKKPNXLKKKIFKXKKKKKKXGGGEKKKKKKKXPXLKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
TKHLVFPQQKKKKKKPNXLKKKIFKXKKKKKKXGGGEKKKKKKKXPXLKK---


Frame B:
qntlsfhskkkkkknqtx*kkkflxxkkkkkkxgggkkkkkkkkxpx*kk---


Frame C:
ktpclstakkkkkktkpfkkknf*xkkkkkkxggggkkkkkkkxppxkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHG108 (CHG108Q) /CSM/CH/CHG1-A/CHG108Q.Seq.d/                         50   1e-05
own update 2002. 9.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL032662|AL032662.1 Caenorhabditis elegans YAC Y75B12A.            34   0.31   2
BB794606|BB794606.1 Mus musculus bone marrow stroma cell CRL-2028 SR-4987 cDNA, RIKEN full-length enriched library, clone:G431001B22, 3' end partial sequence.    44   0.63   1
BQ265773|BQ265773.1 NISC_ff09a03.x1 NCI_CGAP_Mam5 Mus musculus cDNA clone IMAGE:2865292 3', mRNA sequence.    44   0.63   1
BB795267|BB795267.1 Mus musculus bone marrow stroma cell CRL-2028 SR-4987 cDNA, RIKEN full-length enriched library, clone:G431004C23, 3' end partial sequence.    44   0.63   1
BB794754|BB794754.1 Mus musculus bone marrow stroma cell CRL-2028 SR-4987 cDNA, RIKEN full-length enriched library, clone:G431001L20, 3' end partial sequence.    44   0.63   1
BB794805|BB794805.1 Mus musculus bone marrow stroma cell CRL-2028 SR-4987 cDNA, RIKEN full-length enriched library, clone:G431001P10, 3' end partial sequence.    44   0.63   1
BB795507|BB795507.1 Mus musculus bone marrow stroma cell CRL-2028 SR-4987 cDNA, RIKEN full-length enriched library, clone:G431005G08, 3' end partial sequence.    44   0.63   1
BB795374|BB795374.1 Mus musculus cDNA, RIKEN full-length enriched library, clone:G431004M13, 3' end partial sequence.    44   0.63   1
AC098856|AC098856.1 Caenorhabditis elegans cosmid Y37F4, complete sequence.    34   2.0    2
AF026206|AF026206.1 Caenorhabditis elegans cosmid T28B4, complete sequence.    34   2.1    2
dna update 2004.10. 3
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 39,516,766
protein update 2009. 3.31
PSORT 

 psg: 0.37  gvh: -0.04  alm: 0.84  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 1.60  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CHG108 is nuc
5' end seq. ID CHG108F
5' end seq. 
>CHG108F.Seq
ACAAAACACCTTGTCTTTCCACAGCAAAAAAAAAAAAAAAAAAAACCAAACCNTTTAAAA
AAAAAAATTTTTAAANNAAAAAAAAAAAAAAAAAAAANGGGGGGGGGGGAAAAAAAAAAA
AAAAAAAAAAAAANCCCCCNNTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 163
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -