CHG106
Library CH
(Link to library)
Clone ID CHG106
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16291-1
Original site URL
Representative seq. ID CHG106P
(Link to Original site)
Representative DNA sequence
>CHG106 (CHG106Q) /CSM/CH/CHG1-A/CHG106Q.Seq.d/
ATTTTAAGATCCGAAGAGGATTTAGCGCATTTCAGAGGTAATATAGAATGTGAACATCCA
AACAATGTCATTTACGTTTACAATGGTGCAATTCAAATGACCGACGATAGCCAAAAGCAT
CCATTGAATAATACACAAACATTGTTAAGAGGTTGTGTCCTTAGAAATACGGAATGGATT
TATGGTGCAGTGGTTTACACTGGTGAGGATACCAAATTGATGCAAAATTCAACCGATGCT
CCATCGAAAAGAAGTACTTTGGAAAAGTTGGTCAATAGAGCACTCATCAATCTTTTCATT
ATTATGTTTGTGGTTTGTGTAGTTGGTATGATTGTTAGTGTCATTCTCACCAGCACCAAT
ATCGATAAACAATGGTATTTGGATTTCGAACAAAAAGATGTACGTAAAGCAGTTCTCAAT
CTCTTTTCATTTATGATTGCTTXXXXXXXXXXATAACCGTAAACTTTAAGTTGGCATTTN
AAACTCGTTATTGGACTTGGATTANTCATTTTTCAATTTGGGNTTCCNTTTTAATTTGGT
TNGCTTGGGNANCAGTTTTANCTGCAATTCCAGGNATTGGTTNAACTTCAAGNGGNGANA
TTTATTATGNTGCCTANAAAANATTTGCAAGTCCATCATTTTGGTTATCAANANCTGNGN
TACCNACCNTTTGTTTGGCNCCCGACGTCATTTNCAAANACATCCAAAAANATGTTAAAC
CTTNCAACTATCAAATNGTTCAANAAATNGANAAAATTTATGGTNAACCNTCCGATATTA
TGAGTAAANAAAACTTGGGTAAATTTTNAAANACCNATGANATNGAAAAAATGGGTGTTG
AATTTCCCCNACNACAANAAAAAANAAAAAANAANAGAATTNAATTTTTAACTTGGA
sequence update 2002.10.25
Translated Amino Acid sequence
ILRSEEDLAHFRGNIECEHPNNVIYVYNGAIQMTDDSQKHPLNNTQTLLRGCVLRNTEWI
YGAVVYTGEDTKLMQNSTDAPSKRSTLEKLVNRALINLFIIMFVVCVVGMIVSVILTSTN
IDKQWYLDFEQKDVRKAVLNLFSFMIA---

---ITVNFKLAFXTRYWTWIXHFSIWXSXLIWXAWXXVLXAIPGIGXTSXGXIYYXAXKX
FASPSFWLSXXXXPTXCLAPDVIXKXIQKXVKPXNYQXVQXXXKIYGXPSDIMSKXNLGK
FXXTXXXEKMGVEFPXXQXKXKXXRIXFLTW


Translated Amino Acid sequence (All Frames)
Frame A:
ILRSEEDLAHFRGNIECEHPNNVIYVYNGAIQMTDDSQKHPLNNTQTLLRGCVLRNTEWI
YGAVVYTGEDTKLMQNSTDAPSKRSTLEKLVNRALINLFIIMFVVCVVGMIVSVILTSTN
IDKQWYLDFEQKDVRKAVLNLFSFMIA---

---ITVNFKLAFXTRYWTWIXHFSIWXSXLIWXAWXXVLXAIPGIGXTSXGXIYYXAXKX
FASPSFWLSXXXXPTXCLAPDVIXKXIQKXVKPXNYQXVQXXXKIYGXPSDIMSKXNLGK
FXXTXXXEKMGVEFPXXQXKXKXXRIXFLTW

Frame B:
f*dpkri*risevi*nvniqtmsftftmvqfk*ptiaksih*iihkhc*evvsleirngf
mvqwftlvripn*ckiqpmlhrkevlwkswsiehssifsllclwfv*lv*llvsfspapi
sinngiwisnkkmyvkqfsisfhl*ll---

---*p*tlswhxklviglglxifqfgxpf*fgxlgxqfxlqfqxlvxlqxxxfimxpxkx
lqvhhfgyqxlxyxpfvwxptsfxxtskxmlnlxtikxfxkxxkfmvnxpil*vxktwvn
fxxpmxxkkwvlnfpxxxkkxkxxexnf*lg

Frame C:
fkirrgfsafqr*yrm*tskqchlrlqwcnsndrr*pkasie*ytnivkrlcp*kygmdl
wcsglhw*gyqidakfnrcsiekkyfgkvgq*sthqsfhyyvcglcswydc*chshqhqy
r*tmvfgfrtkrct*sssqslfiydc---

---nrkl*vgixnslldldxsffnlgfxfnlvxlgxsfxcnsrxwxnfkxxxllxclxxi
cksiilvixxxxtxxlfgxrrhxqxhpkxc*txqlsnxsxnxxnlwxtxryye*xklg*i
xkxx*xxkngc*ispttxkxkkxxnxifnl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHG106 (CHG106Q) /CSM/CH/CHG1-A/CHG106Q.Seq.d/ 1396 0.0
AHL553 (AHL553Q) /CSM/AH/AHL5-C/AHL553Q.Seq.d/ 876 0.0
AHJ302 (AHJ302Q) /CSM/AH/AHJ3-A/AHJ302Q.Seq.d/ 876 0.0
AHE265 (AHE265Q) /CSM/AH/AHE2-C/AHE265Q.Seq.d/ 876 0.0
SHJ409 (SHJ409Q) /CSM/SH/SHJ4-A/SHJ409Q.Seq.d/ 868 0.0
AHH240 (AHH240Q) /CSM/AH/AHH2-B/AHH240Q.Seq.d/ 866 0.0
CHL763 (CHL763Q) /CSM/CH/CHL7-C/CHL763Q.Seq.d/ 839 0.0
AHJ122 (AHJ122Q) /CSM/AH/AHJ1-A/AHJ122Q.Seq.d/ 791 0.0
SHA434 (SHA434Q) /CSM/SH/SHA4-B/SHA434Q.Seq.d/ 763 0.0
AHJ387 (AHJ387Q) /CSM/AH/AHJ3-D/AHJ387Q.Seq.d/ 761 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC090127|AC090127.11 Mus musculus chromosome 6, clone RP23-128D23, complete sequence. 44 3.9 1
AC068714|AC068714.9 Homo sapiens chromosome 15 clone RP11-315O8 map 15q15, complete sequence. 44 3.9 1
AL591439|AL591439.1 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP13-315I1. 44 3.9 1
BQ042127|BQ042127.1 C2F49 Diethylnitrosamine Treated Medaka Oryzias latipes cDNA clone C2F49 similar to Oryzias latipes DNA for transferrin, complete cds, gi:2143185, mRNA sequence. 44 3.9 1
AC023956|AC023956.2 Homo sapiens chromosome 2 clone RP11-339O18 map 2, WORKING DRAFT SEQUENCE, 47 unordered pieces. 38 7.2 3
AF160864|AF160864.1 Tetrahymena pyriformis mitochondrial DNA, complete genome. 34 8.9 3
AC091610|AC091610.3 Homo sapiens chromosome 1 clone RP11-220M1, complete sequence. 42 9.6 4
CN782718|CN782718.1 ai_V003.25 Bay Scallop planktonic veliger larvae ZAP Express Library Argopecten irradians cDNA 5', mRNA sequence. 40 9.7 2
CN782720|CN782720.1 ai_V003.10 Bay Scallop planktonic veliger larvae ZAP Express Library Argopecten irradians cDNA 5', mRNA sequence. 40 9.7 2
CN782721|CN782721.1 ai_V003.26 Bay Scallop planktonic veliger larvae ZAP Express Library Argopecten irradians cDNA 5', mRNA sequence. 40 9.9 2
dna update 2004.10. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE013599_1784(AE013599|pid:none) Drosophila melanogaster chromos... 104 4e-21
AE013599_1781(AE013599|pid:none) Drosophila melanogaster chromos... 104 4e-21
AE013599_1788(AE013599|pid:none) Drosophila melanogaster chromos... 104 4e-21
AE013599_1780(AE013599|pid:none) Drosophila melanogaster chromos... 104 4e-21
AE013599_1778(AE013599|pid:none) Drosophila melanogaster chromos... 104 4e-21
AE013599_1789(AE013599|pid:none) Drosophila melanogaster chromos... 104 4e-21
AC007258_14(AC007258|pid:none) Arabidopsis thaliana chromosome I... 97 7e-19
AC137819_13(AC137819|pid:none) Medicago truncatula clone mth2-21... 96 2e-18
BC109318_1(BC109318|pid:none) Homo sapiens ATPase, aminophosphol... 95 3e-18
AK295616_1(AK295616|pid:none) Homo sapiens cDNA FLJ61275 complet... 95 3e-18
protein update 2009. 3.31
PSORT

psg: 0.75 gvh: 0.36 alm: 0.10 top: 0.40 tms: 0.07 mit: 0.22 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.05 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: mitochondrial
20.0 %: nuclear
16.0 %: cytoplasmic
12.0 %: Golgi
12.0 %: endoplasmic reticulum
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for CHG106 is mit

5' end seq. ID CHG106F
5' end seq.
>CHG106F.Seq
ATTTTAAGATCCGAAGAGGATTTAGCGCATTTCAGAGGTAATATAGAATGTGAACATCCA
AACAATGTCATTTACGTTTACAATGGTGCAATTCAAATGACCGACGATAGCCAAAAGCAT
CCATTGAATAATACACAAACATTGTTAAGAGGTTGTGTCCTTAGAAATACGGAATGGATT
TATGGTGCAGTGGTTTACACTGGTGAGGATACCAAATTGATGCAAAATTCAACCGATGCT
CCATCGAAAAGAAGTACTTTGGAAAAGTTGGTCAATAGAGCACTCATCAATCTTTTCATT
ATTATGTTTGTGGTTTGTGTAGTTGGTATGATTGTTAGTGTCATTCTCACCAGCACCAAT
ATCGATAAACAATGGTATTTGGATTTCGAACAAAAAGATGTACGTAAAGCAGTTCTCAAT
CTCTTTTCATTTATGATTGCTTNNNNNNNNNN
Length of 5' end seq. 452
3' end seq. ID CHG106Z
3' end seq.
>CHG106Z.Seq
NNNNNNNNNNATAACCGTAAACTTTAAGTTGGCATTTNAAACTCGTTATTGGACTTGGAT
TANTCATTTTTCAATTTGGGNTTCCNTTTTAATTTGGTTNGCTTGGGNANCAGTTTTANC
TGCAATTCCAGGNATTGGTTNAACTTCAAGNGGNGANATTTATTATGNTGCCTANAAAAN
ATTTGCAAGTCCATCATTTTGGTTATCAANANCTGNGNTACCNACCNTTTGTTTGGCNCC
CGACGTCATTTNCAAANACATCCAAAAANATGTTAAACCTTNCAACTATCAAATNGTTCA
ANAAATNGANAAAATTTATGGTNAACCNTCCGATATTATGAGTAAANAAAACTTGGGTAA
ATTTTNAAANACCNATGANATNGAAAAAATGGGTGTTGAATTTCCCCNACNACAANAAAA
AANAAAAAANAANAGAATTNAATTTTTAACTTGGA
Length of 3' end seq. 455
Connected seq. ID CHG106P
Connected seq.
>CHG106P.Seq
ATTTTAAGATCCGAAGAGGATTTAGCGCATTTCAGAGGTAATATAGAATGTGAACATCCA
AACAATGTCATTTACGTTTACAATGGTGCAATTCAAATGACCGACGATAGCCAAAAGCAT
CCATTGAATAATACACAAACATTGTTAAGAGGTTGTGTCCTTAGAAATACGGAATGGATT
TATGGTGCAGTGGTTTACACTGGTGAGGATACCAAATTGATGCAAAATTCAACCGATGCT
CCATCGAAAAGAAGTACTTTGGAAAAGTTGGTCAATAGAGCACTCATCAATCTTTTCATT
ATTATGTTTGTGGTTTGTGTAGTTGGTATGATTGTTAGTGTCATTCTCACCAGCACCAAT
ATCGATAAACAATGGTATTTGGATTTCGAACAAAAAGATGTACGTAAAGCAGTTCTCAAT
CTCTTTTCATTTATGATTGCTT----------ATAACCGTAAACTTTAAGTTGGCATTTN
AAACTCGTTATTGGACTTGGATTANTCATTTTTCAATTTGGGNTTCCNTTTTAATTTGGT
TNGCTTGGGNANCAGTTTTANCTGCAATTCCAGGNATTGGTTNAACTTCAAGNGGNGANA
TTTATTATGNTGCCTANAAAANATTTGCAAGTCCATCATTTTGGTTATCAANANCTGNGN
TACCNACCNTTTGTTTGGCNCCCGACGTCATTTNCAAANACATCCAAAAANATGTTAAAC
CTTNCAACTATCAAATNGTTCAANAAATNGANAAAATTTATGGTNAACCNTCCGATATTA
TGAGTAAANAAAACTTGGGTAAATTTTNAAANACCNATGANATNGAAAAAATGGGTGTTG
AATTTCCCCNACNACAANAAAAAANAAAAAANAANAGAATTNAATTTTTAACTTGGA
Length of connected seq. 887
Full length Seq ID -
Full length Seq. -
Length of full length seq. -