>CHG105 (CHG105Q) /CSM/CH/CHG1-A/CHG105Q.Seq.d/
ATTATTAAAAACTCCCACAAACACACACACTCACATTGTATATTTACACTTTATAATTTA
TATATAAATATATACAAATAAATACAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAANGGGGGGTTTTNCCCCNAAAAAAAAAXXXXXXXXXX

llktptnththivylhfiiyi*IYTNKYNIKKKKKKKKKKKKKXGGFXPXKK---

Frame A:
iiknshkhthshciftlynlyiniyk*iqykkkkkkkkkkkkkkxgvxpxkk---


Frame B:
llktptnththivylhfiiyi*IYTNKYNIKKKKKKKKKKKKKXGGFXPXKK---


Frame C:
y*klpqthtltlyiytl*fiykyiqinti*kkkkkkkkkkkkkxggfxpkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK377 (VHK377Q) /CSM/VH/VHK3-D/VHK377Q.Seq.d/                         74   7e-13
SHI648 (SHI648Q) /CSM/SH/SHI6-B/SHI648Q.Seq.d/                         74   7e-13
SHH506 (SHH506Q) /CSM/SH/SHH5-A/SHH506Q.Seq.d/                         74   7e-13
SHG585 (SHG585Q) /CSM/SH/SHG5-D/SHG585Q.Seq.d/                         74   7e-13
SHG415 (SHG415Q) /CSM/SH/SHG4-A/SHG415Q.Seq.d/                         74   7e-13
SHG367 (SHG367Q) /CSM/SH/SHG3-C/SHG367Q.Seq.d/                         74   7e-13
SHG192 (SHG192Q) /CSM/SH/SHG1-D/SHG192Q.Seq.d/                         74   7e-13
CHO463 (CHO463Q) /CSM/CH/CHO4-C/CHO463Q.Seq.d/                         74   7e-13
CHO143 (CHO143Q) /CSM/CH/CHO1-B/CHO143Q.Seq.d/                         74   7e-13
CHN413 (CHN413Q) /CSM/CH/CHN4-A/CHN413Q.Seq.d/                         74   7e-13

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC126186|AC126186.4 Rattus norvegicus clone CH230-467A3, WORKING DRAFT SEQUENCE.    40   0.001  3
AC094696|AC094696.4 Rattus norvegicus clone CH230-5F3, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    42   0.024  2
AC126726|AC126726.4 Rattus norvegicus clone CH230-6A21, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.    42   0.032  2
AC093939|AC093939.7 Rattus norvegicus clone CH230-172N14, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40   0.050  4
AC112866|AC112866.5 Rattus norvegicus 1 BAC CH230-375M13 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence.    44   0.056  2
AC113992|AC113992.4 Mus musculus chromosome 3 clone RP24-140K12 map 3, WORKING DRAFT SEQUENCE, 10 ordered pieces.    40   0.057  2
AL844867|AL844867.3 Mouse DNA sequence from clone RP23-17B8 on chromosome X.    44   0.065  2
AC118772|AC118772.5 Rattus norvegicus 10 BAC CH230-404C20 (Children's Hospital Oakland Research Institute) complete sequence.    38   0.066  2
AC109206|AC109206.6 Mus musculus chromosome 9 clone RP23-142F22 map 9, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.    42   0.080  2
AC141087|AC141087.4 Rattus norvegicus clone CH230-159H4, WORKING DRAFT SEQUENCE, 62 unordered pieces.    42   0.081  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 149,453,322

 psg: 0.03  gvh: -0.21  alm: 0.97  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.89  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHG105 is nuc

>CHG105F.Seq
ATTATTAAAAACTCCCACAAACACACACACTCACATTGTATATTTACACTTTATAATTTA
TATATAAATATATACAAATAAATACAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAANGGGGGGTTTTNCCCCNAAAAAAAAANNNNNNNNNN