>CHF878 (CHF878Q) /CSM/CH/CHF8-D/CHF878Q.Seq.d/
XXXXXXXXXXATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGA
ACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGT
CAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGT
ATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCATTAC
ACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATG
GAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGAT
TGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCA
AATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCAGTT
TGCAAACCAAAAGGACACTCACTTTAAAAAAAANTA

---NPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGI
PELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDC
LDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFTPVCKPKGHSL*kkx

Frame A:
---*sn*rlcytitsfnwwnypsnhywcits*v*llsnwskmfisqws*nly*tsnhwwy
srinywlcwynnwqgyrslhriryr*stfm**isl*krngmscc*wcsrmftiklqmfrl
frssl*etr*fhlfyg*kskfhf**t*llw*iml*ihtslqtkrtltlkkx


Frame B:
---NPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGI
PELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDC
LDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFTPVCKPKGHSL*kkx


Frame C:
---iqltvvlhhhqfqlvelslqpllvyhklsvivvqlvknvy*smvmkfvlnqqplvvf
qn*llvvlvqqlaglqvitqnqvqvihiyvidiivkeewnvmllmvfqnvyhqttnv*iv
*ifivrdkvispvlwlkiqisflvnivvmvnhvvnshqfanqkdthfkkx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL169 (SHL169Q) /CSM/SH/SHL1-C/SHL169Q.Seq.d/                        981   0.0
SHK884 (SHK884Q) /CSM/SH/SHK8-D/SHK884Q.Seq.d/                        981   0.0
SHK535 (SHK535Q) /CSM/SH/SHK5-B/SHK535Q.Seq.d/                        981   0.0
SHJ893 (SHJ893Q) /CSM/SH/SHJ8-D/SHJ893Q.Seq.d/                        981   0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/                        981   0.0
SHJ668 (SHJ668Q) /CSM/SH/SHJ6-C/SHJ668Q.Seq.d/                        981   0.0
SHG839 (SHG839Q) /CSM/SH/SHG8-B/SHG839Q.Seq.d/                        981   0.0
SHG748 (SHG748Q) /CSM/SH/SHG7-B/SHG748Q.Seq.d/                        981   0.0
SHG737 (SHG737Q) /CSM/SH/SHG7-B/SHG737Q.Seq.d/                        981   0.0
SHG373 (SHG373Q) /CSM/SH/SHG3-D/SHG373Q.Seq.d/                        981   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18.    42   0.005  4
AC025368|AC025368.1 Homo sapiens chromosome 13 clone RP11-270C9 map 13, LOW-PASS SEQUENCE SAMPLING.    40   0.029  2
AF160181|AF160181.1 Arabidopsis thaliana BAC T14A16.               42   0.12   2
BU725144|BU725144.1 SJMBXF01 SJM Schistosoma japonicum cDNA, mRNA sequence.    44   0.23   2
AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence.    46   0.56   1
AZ432453|AZ432453.1 1M0217E22R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0217E22 R, DNA sequence.    38   0.64   2
AZ496247|AZ496247.1 1M0332M02R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0332M02 R, DNA sequence.    38   0.74   2
AL139082|AL139082.18 Human DNA sequence from clone RP11-248G5 on chromosome 13q14.3-21.1.    34   1.1    5
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    42   1.3    6
AY484669|AY484669.1 Rabbitpox virus, complete genome.              32   1.9    6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                298   5e-80
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                175   5e-43
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    52   8e-06
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    43   0.004
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    43   0.004
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    42   0.007
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    42   0.011
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 39   0.074
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    37   0.21
AB011475_1(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ...    37   0.21

 psg: 0.75  gvh: 0.42  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for CHF878 is nuc

>CHF878Z.Seq
NNNNNNNNNNATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGA
ACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGT
CAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGT
ATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCATTAC
ACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATG
GAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGAT
TGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCA
AATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCAGTT
TGCAAACCAAAAGGACACTCACTTTAAAAAAAANTA