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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF875
Library CH
(Link to library)
Clone ID CHF875
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11007-1|Contig-U12979-1
Original site URL
Representative seq. ID CHF875P
(Link to Original site)
Representative DNA sequence 
>CHF875 (CHF875Q) /CSM/CH/CHF8-D/CHF875Q.Seq.d/
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATANTAATNNTNNTGATGATNNTNATNNTNANGANTANNNNNCGNCNNAA
NCNNCACCACCACCACCACAACNANNTNCANCNNNTNCTGCANCNNCTACTGCTGCTACT
NCTNCTACTACTANTANTAATANNAANAANAATAANAANAACAANAANAATAANAACAAN
AANAATAANAATAANAATAATAATAATAATAATAATXXXXXXXXXXAAAACATAATGTCA
TTTCAAATTTAAATCAACTTCAACAACAACAACCATCATCTGATGAATTAATGATTGACC
AAAAAGAAGAAAAGAATTGTAATAATAATAATGAAAATAATAATAATAATGACAATAATA
AAAATAGTGATGATGAAAAAGGTAAAGAAATTGAAGAAATTAAAAGAAAATCAACAACAA
CAACCATTTCACCAACTCGTTATGTAAATAATTCAACTATTAGTTTATTAGTTAATCCAA
CATCGGTAATTGGTGATATACCAGATGATTTGATGAAAAATTCAAATGTTACTACTTTTG
GTGAAAACTCTTCTTTCAAGTTTAATTTCTTGATTGACACTCAAAATTTCCCAAATGGTT
CTAATGATATTTCAAAAGCATTCTTTGATAATGAAAATCAACAAATGACTGTCACCTCTG
TTATTTATTGCAATTTCAAAAATCACCTTAAAACTCCTT
sequence update 2002.10.25
Translated Amino Acid sequence 
NNNNNNNNNNNNNNNNNNNNNNNNXNXXDDXXXXXXXXXXXXPPPPQXXXXXXAXXTAAT
XXTTXXNXXXNXXNXXNXNXXNXNXNNNNNNN---

---KHNVISNLNQLQQQQPSSDELMIDQKEEKNCNNNNENNNNNDNNKNSDDEKGKEIEE
IKRKSTTTTISPTRYVNNSTISLLVNPTSVIGDIPDDLMKNSNVTTFGENSSFKFNFLID
TQNFPNGSNDISKAFFDNENQQMTVTSVIYCNFKNHLKTP
Translated Amino Acid sequence (All Frames) 
Frame A:
NNNNNNNNNNNNNNNNNNNNNNNNXNXXDDXXXXXXXXXXXXPPPPQXXXXXXAXXTAAT
XXTTXXNXXXNXXNXXNXNXXNXNXNNNNNNN---

---kt*chfkfkststtttii**ind*pkrrkel*****k*****q**k****kr*rn*r
n*kkinnnnhftnslck*fny*fis*snignw*ytr*fdekfkcyyfw*klffqv*fld*
hskfpkwf**yfksil***kstndchlcyllqfqksp*ns

Frame B:
iiiiiiiiiiiiiiiiiiiiiiiixxxxmxxxxxxxxrxxxhhhhhnxxxxxlxxlllll
llllxxixxxixxtxxixtxxixixiiiiii---

---KHNVISNLNQLQQQQPSSDELMIDQKEEKNCNNNNENNNNNDNNKNSDDEKGKEIEE
IKRKSTTTTISPTRYVNNSTISLLVNPTSVIGDIPDDLMKNSNVTTFGENSSFKFNFLID
TQNFPNGSNDISKAFFDNENQQMTVTSVIYCNFKNHLKTP

Frame C:
***********************x*xx**xxxxxxxxxxxxttttttxxxxxcxxyccyx
xyyxx*xxxx*xxqxx*xqxx*x*x******---

---nimsfqi*infnnnnhhlmn**ltkkkkriviiimkiiiimtiikivmmkkvkklkk
lkenqqqqpfhqlvm*iiqllvy*liqhr*lviyqmi**kiqmllllvktllsslis*lt
lkisqmvlmifqkhslimkink*lspllfiaiskitlkll
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF875 (CHF875Q) /CSM/CH/CHF8-D/CHF875Q.Seq.d/                        660   0.0
VFO825 (VFO825Q) /CSM/VF/VFO8-B/VFO825Q.Seq.d/                        613   e-174
SSL649 (SSL649Q) /CSM/SS/SSL6-C/SSL649Q.Seq.d/                        613   e-174
AFK160 (AFK160Q) /CSM/AF/AFK1-C/AFK160Q.Seq.d/                        613   e-174
VHI629 (VHI629Q) /CSM/VH/VHI6-B/VHI629Q.Seq.d/                        549   e-155
VHL606 (VHL606Q) /CSM/VH/VHL6-A/VHL606Q.Seq.d/                         44   0.003
SHK290 (SHK290Q) /CSM/SH/SHK2-D/SHK290Q.Seq.d/                         44   0.003
VHB651 (VHB651Q) /CSM/VH/VHB6-C/VHB651Q.Seq.d/                         42   0.012
SSJ565 (SSJ565Q) /CSM/SS/SSJ5-C/SSJ565Q.Seq.d/                         42   0.012
SFH454 (SFH454Q) /CSM/SF/SFH4-C/SFH454Q.Seq.d/                         42   0.012
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36   6e-10  16
AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence.    36   5e-09  10
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38   2e-08  11
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38   3e-08  11
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    36   1e-07  13
AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence.    36   2e-07  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40   2e-07  12
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   2e-07  13
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   8e-07  14
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   1e-06  15
dna update 2004.10. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55A09) RecName: Full=Probable serine/threonine-protein kinase ...    40   0.076
AC116989_2(AC116989|pid:none) Dictyostelium discoideum chromosom...    40   0.076
(Q558U1) RecName: Full=Probable serine/threonine-protein kinase ...    39   0.22
(Q54US7) RecName: Full=GATA zinc finger domain-containing protei...    39   0.22
(Q54LK8) RecName: Full=Uncharacterized protein DDB_G0286591;           38   0.38
(Q54MB1) RecName: Full=Uncharacterized SDCCAG3 family protein;         37   0.49
(Q55EI8) RecName: Full=Probable serine/threonine-protein kinase ...    37   0.49
AC116986_10(AC116986|pid:none) Dictyostelium discoideum chromoso...    37   0.64
AC116960_59(AC116960|pid:none) Dictyostelium discoideum chromoso...    37   0.64
(Q54L83) RecName: Full=GATA zinc finger domain-containing protei...    37   0.64
protein update 2009. 3.31
PSORT 

 psg: 0.51  gvh: 0.50  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for CHF875 is cyt
5' end seq. ID CHF875F
5' end seq. 
>CHF875F.Seq
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATANTAATNNTNNTGATGATNNTNATNNTNANGANTANNNNNCGNCNNAA
NCNNCACCACCACCACCACAACNANNTNCANCNNNTNCTGCANCNNCTACTGCTGCTACT
NCTNCTACTACTANTANTAATANNAANAANAATAANAANAACAANAANAATAANAACAAN
AANAATAANAATAANAATAATAATAATAATAATAATNNNNNNNNNN
Length of 5' end seq. 286
3' end seq. ID CHF875Z
3' end seq. 
>CHF875Z.Seq
NNNNNNNNNNAAAACATAATGTCATTTCAAATTTAAATCAACTTCAACAACAACAACCAT
CATCTGATGAATTAATGATTGACCAAAAAGAAGAAAAGAATTGTAATAATAATAATGAAA
ATAATAATAATAATGACAATAATAAAAATAGTGATGATGAAAAAGGTAAAGAAATTGAAG
AAATTAAAAGAAAATCAACAACAACAACCATTTCACCAACTCGTTATGTAAATAATTCAA
CTATTAGTTTATTAGTTAATCCAACATCGGTAATTGGTGATATACCAGATGATTTGATGA
AAAATTCAAATGTTACTACTTTTGGTGAAAACTCTTCTTTCAAGTTTAATTTCTTGATTG
ACACTCAAAATTTCCCAAATGGTTCTAATGATATTTCAAAAGCATTCTTTGATAATGAAA
ATCAACAAATGACTGTCACCTCTGTTATTTATTGCAATTTCAAAAATCACCTTAAAACTC
CTT
Length of 3' end seq. 483
Connected seq. ID CHF875P
Connected seq. 
>CHF875P.Seq
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATANTAATNNTNNTGATGATNNTNATNNTNANGANTANNNNNCGNCNNAA
NCNNCACCACCACCACCACAACNANNTNCANCNNNTNCTGCANCNNCTACTGCTGCTACT
NCTNCTACTACTANTANTAATANNAANAANAATAANAANAACAANAANAATAANAACAAN
AANAATAANAATAANAATAATAATAATAATAATAAT----------AAAACATAATGTCA
TTTCAAATTTAAATCAACTTCAACAACAACAACCATCATCTGATGAATTAATGATTGACC
AAAAAGAAGAAAAGAATTGTAATAATAATAATGAAAATAATAATAATAATGACAATAATA
AAAATAGTGATGATGAAAAAGGTAAAGAAATTGAAGAAATTAAAAGAAAATCAACAACAA
CAACCATTTCACCAACTCGTTATGTAAATAATTCAACTATTAGTTTATTAGTTAATCCAA
CATCGGTAATTGGTGATATACCAGATGATTTGATGAAAAATTCAAATGTTACTACTTTTG
GTGAAAACTCTTCTTTCAAGTTTAATTTCTTGATTGACACTCAAAATTTCCCAAATGGTT
CTAATGATATTTCAAAAGCATTCTTTGATAATGAAAATCAACAAATGACTGTCACCTCTG
TTATTTATTGCAATTTCAAAAATCACCTTAAAACTCCTT
Length of connected seq. 749
Full length Seq ID -
Full length Seq. -
Length of full length seq. -