AFF758
Library AF
(Link to library)
Clone ID AFF758
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15545-1
Original site URL
Representative seq. ID AFF758Z
(Link to Original site)
Representative DNA sequence
>AFF758 (AFF758Q) /CSM/AF/AFF7-C/AFF758Q.Seq.d/
XXXXXXXXXXGGTGGCGCTGTTAGAGGTATCTATAAAGGTGTTATTGAGACCACTTTCTT
TGGCAAAAGAGTTTATTTGGTTGGTACCTATTCACCATTCTATAGTCAACAACAAAGAAA
TAAAAGTCAACGTATACTTTTCAATGATTTTCCAAAGGAAGAATTTGATCCAACCATCAC
AAATCCTTTAACAAGTACTATGCTATTTAGAACTGATAAAGATCTCTCATTGGATATTAC
TTTGGCTGAAAAAGTTTTCTCTTGTAAAGACTTTTGTGAAAAACATAAAGTATCATGTTT
AGAATCTGATATGATGTTATTAACTGATAGTACTATAGTTTTACTACAATTGGAACAACA
TTGTAGTCAAGTAAACTATATACCAAGTAATAATAC
sequence update 2001. 6. 2
Translated Amino Acid sequence
---GAVRGIYKGVIETTFFGKRVYLVGTYSPFYSQQQRNKSQRILFNDFPKEEFDPTITN
PLTSTMLFRTDKDLSLDITLAEKVFSCKDFCEKHKVSCLESDMMLLTDSTIVLLQLEQHC
SQVNYIPSNN


Translated Amino Acid sequence (All Frames)
Frame A:
---vallevsikvllrplslakefiwlvpihhsivnnkeikvnvyfsmifqrknliqpsq
il*qvlcylelikishwillwlkkfslvktfvknikyhv*nli*cy*livl*fyynwnni
vvk*tiyqvii


Frame B:
---wrc*ryl*rcy*dhflwqkslfgwylftil*sttkk*kstytfq*fskgri*snhhk
sfnkyyai*n**rsligyyfg*ksfll*rll*kt*simfri*ydvin**yysfttigttl
*ssklytk**y


Frame C:
---GAVRGIYKGVIETTFFGKRVYLVGTYSPFYSQQQRNKSQRILFNDFPKEEFDPTITN
PLTSTMLFRTDKDLSLDITLAEKVFSCKDFCEKHKVSCLESDMMLLTDSTIVLLQLEQHC
SQVNYIPSNN


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFE435 (SFE435Q) /CSM/SF/SFE4-B/SFE435Q.Seq.d/ 765 0.0
CHD312 (CHD312Q) /CSM/CH/CHD3-A/CHD312Q.Seq.d/ 765 0.0
AFO831 (AFO831Q) /CSM/AF/AFO8-B/AFO831Q.Seq.d/ 765 0.0
AFK872 (AFK872Q) /CSM/AF/AFK8-C/AFK872Q.Seq.d/ 765 0.0
AFF758 (AFF758Q) /CSM/AF/AFF7-C/AFF758Q.Seq.d/ 765 0.0
AFC207 (AFC207Q) /CSM/AF/AFC2-A/AFC207Q.Seq.d/ 765 0.0
AFB456 (AFB456Q) /CSM/AF/AFB4-C/AFB456Q.Seq.d/ 765 0.0
CFG834 (CFG834Q) /CSM/CF/CFG8-B/CFG834Q.Seq.d/ 763 0.0
AHK215 (AHK215Q) /CSM/AH/AHK2-A/AHK215Q.Seq.d/ 757 0.0
AFI627 (AFI627Q) /CSM/AF/AFI6-B/AFI627Q.Seq.d/ 757 0.0

own update 2003. 5.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC092695|AC092695.8 Homo sapiens 3 BAC RP11-81E19 (Roswell Park Cancer Institute HumanBAC Library) complete sequence. 42 0.070 5
AI484136|AI484136.1 EST248943 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER1C5, mRNA sequence. 38 0.074 2
BG128254|BG128254.1 EST473900 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF19D15 5' sequence, mRNA sequence. 38 0.074 2
AI490786|AI490786.1 EST241494 tomato shoot, Cornell Lycopersicon esculentum cDNA clone cLEB3H9 similar to cinnamic acid 4-hydroxylase, mRNA sequence. 38 0.074 2
BG133859|BG133859.1 EST466751 tomato crown gall Lycopersicon esculentum cDNA clone cTOE14I10 5' sequence, mRNA sequence. 38 0.075 2
AI773934|AI773934.1 EST255034 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER8N1, mRNA sequence. 38 0.076 2
AC123647|AC123647.4 Mus musculus chromosome 3 clone RP23-105J10 map 3, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 42 0.31 4
CR376789|CR376789.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 34 0.35 5
AC123464|AC123464.4 Rattus norvegicus clone CH230-17P22, WORKING DRAFT SEQUENCE, 1 ordered piece. 46 0.38 1
BX323843|BX323843.9 Zebrafish DNA sequence from clone CH211-10A23 in linkage group 19. 46 0.38 1
dna update 2004. 4.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT011349_1(BT011349|pid:none) Drosophila melanogaster RH02355 fu... 35 0.59
AY069808_1(AY069808|pid:none) Drosophila melanogaster SD04942 fu... 35 0.59
AE014297_4620(AE014297|pid:none) Drosophila melanogaster chromos... 35 0.59
AX814538_1(AX814538|pid:none) Sequence 19 from Patent WO03064471. 33 2.2
FM992689_214(FM992689|pid:none) Candida dubliniensis CD36 chromo... 33 2.9
CP000230_2242(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 33 2.9
CP000939_3055(CP000939|pid:none) Clostridium botulinum B1 str. O... 32 8.5

protein update 2009. 4.20
PSORT

psg: 0.84 gvh: 0.39 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.50
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: mitochondrial
24.0 %: nuclear
8.0 %: Golgi
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for AFF758 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFF758Z
3' end seq.
>AFF758Z.Seq
----------GGTGGCGCTGTTAGAGGTATCTATAAAGGTGTTATTGAGACCACTTTCTT
TGGCAAAAGAGTTTATTTGGTTGGTACCTATTCACCATTCTATAGTCAACAACAAAGAAA
TAAAAGTCAACGTATACTTTTCAATGATTTTCCAAAGGAAGAATTTGATCCAACCATCAC
AAATCCTTTAACAAGTACTATGCTATTTAGAACTGATAAAGATCTCTCATTGGATATTAC
TTTGGCTGAAAAAGTTTTCTCTTGTAAAGACTTTTGTGAAAAACATAAAGTATCATGTTT
AGAATCTGATATGATGTTATTAACTGATAGTACTATAGTTTTACTACAATTGGAACAACA
TTGTAGTCAAGTAAACTATATACCAAGTAATAATAC
Length of 3' end seq. 386
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -