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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF852
Library CH
(Link to library)
Clone ID CHF852
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID CHF852P
(Link to Original site)
Representative DNA sequence 
>CHF852 (CHF852Q) /CSM/CH/CHF8-C/CHF852Q.Seq.d/
AATAATTATAATTTAACTAATAGTTAAATTAAAAAGAATAATTCCATATATTTTTTTTTA
ATTCATATCTTTTTTTTTTAAAATTTTTTTTTTTTAAAAAAAAAAATGGAAAXXXXXXXX
XXTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTT
AGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACT
GATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGG
AGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAG
TTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTC
CGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAG
GCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTT
TTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTT
AGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTC
TCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAA
TGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTATTC
sequence update 2002.10.25
Translated Amino Acid sequence 
*l*fn**ln*ke*FHIFFFNSYLFFLKFFFFKKKNG---

---LVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVEATDLWRAEQTFFGFAGTYIS
SWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEVFRQTKLVNENDNAQESSGK
HKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAVLRFNCFQNDMWLLVVVAGF
SFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVY
Translated Amino Acid sequence (All Frames) 
Frame A:
nnynltns*ikknnsiyfflihifff*nffflkkkme---

---srrydscngvtkshsiyds*sqetl*sr*ewsitlgrsy*sles*tnflwfcwylyf
imerrfrfnr*ts*s*kd*ss*vshveleerfrketssl*sfpsn*igq*k**csrikw*
t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgydecct*i*lfpk*yvafgcrswf
lflylmafmvfhsngsssk*ktmaicffipcsqyclf

Frame B:
iiii*livklkriipyiff*fisfffkifff*kkkwk---

---LVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVEATDLWRAEQTFFGFAGTYIS
SWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEVFRQTKLVNENDNAQESSGK
HKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAVLRFNCFQNDMWLLVVVAGF
SFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVY

Frame C:
*l*fn**ln*ke*FHIFFFNSYLFFLKFFFFKKKNG---

---ssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg*kllifgelnklslvllvlifh
hgekvplqslnflklerlvvis*pcgigreis*rnq*fvkfsvklnwsmkmimlknqvvn
irlnnlsvlqtknliplkiqdfsfqilssllliswl**vlyldlivskmicgfwls*lvs
lslpygiyglsfqwlfvkvknnghmllhtmltilfi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR305 (CHR305Q) /CSM/CH/CHR3-A/CHR305Q.Seq.d/                       1273   0.0
CHH147 (CHH147Q) /CSM/CH/CHH1-B/CHH147Q.Seq.d/                       1273   0.0
CHG847 (CHG847Q) /CSM/CH/CHG8-B/CHG847Q.Seq.d/                       1273   0.0
CHF852 (CHF852Q) /CSM/CH/CHF8-C/CHF852Q.Seq.d/                       1273   0.0
CHF510 (CHF510Q) /CSM/CH/CHF5-A/CHF510Q.Seq.d/                       1273   0.0
AHJ468 (AHJ468Q) /CSM/AH/AHJ4-C/AHJ468Q.Seq.d/                       1273   0.0
AHJ467 (AHJ467Q) /CSM/AH/AHJ4-C/AHJ467Q.Seq.d/                       1273   0.0
SHL378 (SHL378Q) /CSM/SH/SHL3-D/SHL378Q.Seq.d/                       1265   0.0
SHL139 (SHL139Q) /CSM/SH/SHL1-B/SHL139Q.Seq.d/                       1265   0.0
SHK732 (SHK732Q) /CSM/SH/SHK7-B/SHK732Q.Seq.d/                       1265   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds.  1265   0.0    1
AC106526|AC106526.4 Rattus norvegicus clone CH230-25K24, WORKING DRAFT SEQUENCE, 1 ordered piece.    42   0.11   4
AC112749|AC112749.6 Rattus norvegicus clone CH230-34G21, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42   0.11   4
AC007485|AC007485.10 Homo sapiens chromosome 17, clone RP11-257O5, complete sequence.    38   0.25   6
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   1.2    22
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    34   1.4    8
AX707915|AX707915.1 Sequence 683 from Patent WO03013536.           36   1.7    5
AX706985|AX706985.1 Sequence 683 from Patent WO03013534.           36   1.7    5
AC002457|AC002457.2 Homo sapiens BAC clone CTB-60P12 from 7, complete sequence.    36   1.7    5
AP006429|AP006429.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT17D07, TM0322.    36   1.9    4
dna update 2004.10. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U...   434   e-120
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl...    40   0.076
CP001048_907(CP001048|pid:none) Yersinia pseudotuberculosis PB1/...    35   1.9
CP001025_1222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    35   1.9
AL844509_30(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    33   9.3
protein update 2009. 3.31
PSORT 

 psg: 0.89  gvh: 0.36  alm: 0.24  top: 0.40  tms: 0.07  mit: 0.36  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHF852 is mit
5' end seq. ID CHF852F
5' end seq. 
>CHF852F.Seq
AATAATTATAATTTAACTAATAGTTAAATTAAAAAGAATAATTCCATATATTTTTTTTTA
ATTCATATCTTTTTTTTTTAAAATTTTTTTTTTTTAAAAAAAAAAATGGAAANNNNNNNN
NN
Length of 5' end seq. 122
3' end seq. ID CHF852Z
3' end seq. 
>CHF852Z.Seq
NNNNNNNNNNTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATA
TGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAG
AAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTT
CATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTC
GTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTG
AAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTA
AACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATT
CAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTG
CTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTT
TCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTG
AAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTATTC
Length of 3' end seq. 652
Connected seq. ID CHF852P
Connected seq. 
>CHF852P.Seq
AATAATTATAATTTAACTAATAGTTAAATTAAAAAGAATAATTCCATATATTTTTTTTTA
ATTCATATCTTTTTTTTTTAAAATTTTTTTTTTTTAAAAAAAAAAATGGAAA--------
--TCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTT
AGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACT
GATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGG
AGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAG
TTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTC
CGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAG
GCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTT
TTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTT
AGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTC
TCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAA
TGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTATTC
Length of connected seq. 754
Full length Seq ID -
Full length Seq. -
Length of full length seq. -