CHF836
Library CH
(Link to library)
Clone ID CHF836
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16333-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHF836 (CHF836Q) /CSM/CH/CHF8-B/CHF836Q.Seq.d/
XXXXXXXXXXGATTATACCATTTTCAAAGATCACTATCACTCCATCAACCACTAAAACAT
TCAATGGGATTTTAATCACTGGTGCCTCTAATGAATTTTATGATCTAATCTATATGGATG
ATCTTTACTTTTCAAATGGTACGGTTTGTATGGAAGAGTCATCGGAATATCCATACTATC
AACTTGGTCAATTATTAAATGGTGCTTCCGATCAGTATAACACTGGTAATGTAAATTTCA
AATCCGTTAGTAAACTTTTTAGAGGTTTTCCAACTATCGAGTATCAATTATACAATAATT
ACAAAGCAATCATCTCAATGATGAATGGTACAATCGATACATCTCAATATGATCTTTTGA
GATTGAATTTCTTCTTCCTTCATGATCAATCTTATAATAATCCAAATCCAAGTATTGACT
CTAGTGAAGTTGCAAACTCTTTCTTTTTAGATCTTCAAATTTGTATTACCGTTCAAGTGG
TTGGTAATTTACCTTGTGTTGGTTTATCACCATACTTGGGTGGTCAAGTTCCAAATGCAG
TATGGGTTGAACTTTTAATTCCTTTCTCTGATCTTCAAGTTTATCCAAATGCTCTTATCA
GTAGTATCACTTTCCAAACTCAAGTACAAGATCACCAAGGTGTTTTCTTTATTGGTGATA
TTTCTGCTGGTAATTTTGTA
sequence update 2002. 9.10
Translated Amino Acid sequence
---IIPFSKITITPSTTKTFNGILITGASNEFYDLIYMDDLYFSNGTVCMEESSEYPYYQ
LGQLLNGASDQYNTGNVNFKSVSKLFRGFPTIEYQLYNNYKAIISMMNGTIDTSQYDLLR
LNFFFLHDQSYNNPNPSIDSSEVANSFFLDLQICITVQVVGNLPCVGLSPYLGGQVPNAV
WVELLIPFSDLQVYPNALISSITFQTQVQDHQGVFFIGDISAGNFV


Translated Amino Acid sequence (All Frames)
Frame A:
---IIPFSKITITPSTTKTFNGILITGASNEFYDLIYMDDLYFSNGTVCMEESSEYPYYQ
LGQLLNGASDQYNTGNVNFKSVSKLFRGFPTIEYQLYNNYKAIISMMNGTIDTSQYDLLR
LNFFFLHDQSYNNPNPSIDSSEVANSFFLDLQICITVQVVGNLPCVGLSPYLGGQVPNAV
WVELLIPFSDLQVYPNALISSITFQTQVQDHQGVFFIGDISAGNFV


Frame B:
---lyhfqrslslhqplkhsmgf*slvplmnfmi*siwmiftfqmvrfvwkshrnihtin
lvny*mvlpisitlvm*isnplvnflevfqlssinytiitkqssq**mvqsihlnmif*d
*isssfminliiiqiqvltlvklqtlsf*ifkfvlpfkwlviylvlvyhhtwvvkfqmqy
glnf*flslifkfiqmllsvvslsklkykitkvfsllvifllvil


Frame C:
---ytifkdhyhsinh*niqwdfnhwcl**il*snlyg*sllfkwyglygrvigisilst
wsiikwcfrsv*hw*ckfqir**tf*rfsnyrvsiiq*lqsnhlndewynryisi*sfei
efllps*sil**sksky*l**scklflfrssnlyyrssgw*ftlcwfitilgwssskcsm
g*tfnsfl*ssslskcsyq*yhfpnsstrsprcflyw*yfcw*fc


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHF836 (CHF836Q) /CSM/CH/CHF8-B/CHF836Q.Seq.d/ 1328 0.0
CHI503 (CHI503Q) /CSM/CH/CHI5-A/CHI503Q.Seq.d/ 1178 0.0
CHS330 (CHS330Q) /CSM/CH/CHS3-B/CHS330Q.Seq.d/ 1156 0.0
SSJ359 (SSJ359Q) /CSM/SS/SSJ3-C/SSJ359Q.Seq.d/ 1144 0.0
CHR283 (CHR283Q) /CSM/CH/CHR2-D/CHR283Q.Seq.d/ 1120 0.0
CHS395 (CHS395Q) /CSM/CH/CHS3-D/CHS395Q.Seq.d/ 1080 0.0
AHM661 (AHM661Q) /CSM/AH/AHM6-C/AHM661Q.Seq.d/ 1061 0.0
CHJ322 (CHJ322Q) /CSM/CH/CHJ3-A/CHJ322Q.Seq.d/ 1043 0.0
CHL473 (CHL473Q) /CSM/CH/CHL4-D/CHL473Q.Seq.d/ 1023 0.0
AHM266 (AHM266Q) /CSM/AH/AHM2-C/AHM266Q.Seq.d/ 1019 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC025768|AC025768.6 Homo sapiens chromosome 5 clone CTD-2151L9, complete sequence. 32 0.70 6
AC145948|AC145948.5 Gallus gallus chromosome UNK clone CH261-24O17, complete sequence. 46 0.74 1
AE017163|AE017163.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 3 of 6 of the complete genome. 46 0.74 1
AP003711|AP003711.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12. 42 0.78 5
AC118453|AC118453.3 Rattus norvegicus clone CH230-217C17, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 32 0.90 9
BX530057|BX530057.5 Zebrafish DNA sequence from clone DKEY-48O24 in linkage group 1. 40 1.0 5
AE017166|AE017166.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 6 of 6 of the complete genome. 42 1.1 8
BQ203525|BQ203525.1 UI-R-DZ1-cnf-n-06-0-UI.s1 NCI_CGAP_DZ1 Rattus norvegicus cDNA clone IMAGE:7345064 3', mRNA sequence. 36 1.1 3
AC119360|AC119360.5 Rattus norvegicus clone CH230-473I7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 42 1.2 2
BQ191312|BQ191312.1 UI-R-DY0-cmg-g-17-0-UI.s1 NCI_CGAP_DY0 Rattus norvegicus cDNA clone IMAGE:7328395 3', mRNA sequence. 36 1.3 3
dna update 2004.10. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001055_503(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 35 1.5
AM285305_101(AM285305|pid:none) Spiroplasma citri GII3-3X chromo... 35 2.0
AF499596_105(AF499596|pid:none) Phthorimaea operculella granulov... 35 2.6
CP000807_323(CP000807|pid:none) Cyanothece sp. ATCC 51142 linear... 33 5.8
CP001027_141(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch... 33 5.8
CP000127_2594(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 33 7.6
AL844505_76(AL844505|pid:none) Plasmodium falciparum 3D7 chromos... 33 7.6
DQ167129_1(DQ167129|pid:none) Infectious bronchitis virus isolat... 33 7.6
AM285320_11(AM285320|pid:none) Spiroplasma citri GII3-3X chromos... 33 7.6
AM285305_26(AM285305|pid:none) Spiroplasma citri GII3-3X chromos... 33 9.9
protein update 2009. 5.18
PSORT

psg: 0.87 gvh: 0.32 alm: 0.35 top: 0.40 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
20.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for CHF836 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHF836Z
3' end seq.
>CHF836Z.Seq
NNNNNNNNNNGATTATACCATTTTCAAAGATCACTATCACTCCATCAACCACTAAAACAT
TCAATGGGATTTTAATCACTGGTGCCTCTAATGAATTTTATGATCTAATCTATATGGATG
ATCTTTACTTTTCAAATGGTACGGTTTGTATGGAAGAGTCATCGGAATATCCATACTATC
AACTTGGTCAATTATTAAATGGTGCTTCCGATCAGTATAACACTGGTAATGTAAATTTCA
AATCCGTTAGTAAACTTTTTAGAGGTTTTCCAACTATCGAGTATCAATTATACAATAATT
ACAAAGCAATCATCTCAATGATGAATGGTACAATCGATACATCTCAATATGATCTTTTGA
GATTGAATTTCTTCTTCCTTCATGATCAATCTTATAATAATCCAAATCCAAGTATTGACT
CTAGTGAAGTTGCAAACTCTTTCTTTTTAGATCTTCAAATTTGTATTACCGTTCAAGTGG
TTGGTAATTTACCTTGTGTTGGTTTATCACCATACTTGGGTGGTCAAGTTCCAAATGCAG
TATGGGTTGAACTTTTAATTCCTTTCTCTGATCTTCAAGTTTATCCAAATGCTCTTATCA
GTAGTATCACTTTCCAAACTCAAGTACAAGATCACCAAGGTGTTTTCTTTATTGGTGATA
TTTCTGCTGGTAATTTTGTA
Length of 3' end seq. 680
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -