CHF818
Library CH
(Link to library)
Clone ID CHF818
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID CHF818P
(Link to Original site)
Representative DNA sequence
>CHF818 (CHF818Q) /CSM/CH/CHF8-A/CHF818Q.Seq.d/
CATACAATTGCAAGTGCAAGTGTTAACTTGGATTTATTGGGTTTAACACCTGGACAAAAT
TATCCATTTGATTTCTTTTATTGTGAACGTCACACTGTAGAATCTCATATAAGAATTGAA
ACATCTTTGGCATTCAAGTGTCCTCGATATGATGAATGTGGTGTCTGTGAAGGTGATGGT
ACTTCTTGTTGTACTCCAAATAATTGTGATAATAATCCAATTTATAGAACCAACTGTATA
ACAGCAAAATGTTCAAATAATGTTTGCGTTACTTCAGCACCATATTGCAGTTCAACCGAA
CCATGTACAGTTGGTCTTTGTACACCAGGTGTTGGTTGTTCAGTTGTTCCAAAAAATTGT
GTAAATGAAAATCATTGTACCCAAGATTCATGTAATTCAACTATAAATGCTTGCCAACAT
GATCCAATTCCAGATTGTATCAATTGTGCCTATATTGGTTGTATCACTACTGATTATTGT
AATGAACAAGTATGTTCAGCTGATGGAAGATCATGTGAAACTXXXXXXXXXXTTTTAAAT
TGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACTGGTATTTGTCAAAAT
AATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACTATCCCTCCA
ACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAAAAATGTTTA
TTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGTATTCCAGAATTA
ACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCATTACACAGAATCAGGT
ACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTT
GTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAGATCTT
CATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCT
AGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCAGTTTGCAAACCAAAA
GGACACTCACTTTAAAAAAAACTAAAATTAATATATTATTTCTTTTCTTTTTATTATATA
TTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAATTTAATATTACAATATAAACA
TTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAACAACTGCCCCATTTAAACA
sequence update 2002.10.25
Translated Amino Acid sequence
HTIASASVNLDLLGLTPGQNYPFDFFYCERHTVESHIRIETSLAFKCPRYDECGVCEGDG
TSCCTPNNCDNNPIYRTNCITAKCSNNVCVTSAPYCSSTEPCTVGLCTPGVGCSVVPKNC
VNENHCTQDSCNSTINACQHDPIPDCINCAYIGCITTDYCNEQVCSADGRSCET---

---LNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPI
GQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRG
MECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFTP
VCKPKGHSL*kklkliyyffsfyyifllkfynqvn*fqfniti*tlsll*nliinkktta
pfk


Translated Amino Acid sequence (All Frames)
Frame A:
HTIASASVNLDLLGLTPGQNYPFDFFYCERHTVESHIRIETSLAFKCPRYDECGVCEGDG
TSCCTPNNCDNNPIYRTNCITAKCSNNVCVTSAPYCSSTEPCTVGLCTPGVGCSVVPKNC
VNENHCTQDSCNSTINACQHDPIPDCINCAYIGCITTDYCNEQVCSADGRSCET---

---f*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfqlvelslqpllvyhklsvivvq
lvknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqvitqnqvqvihiyvidiivke
ewnvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwlkiqisflvnivvmvnhvvnsh
qfanqkdthfkkn*n*yiisflfiiyfy*nfitkstnfnlilqykh*vycki***ikkql
phln

Frame B:
iqlqvqvltwiywv*hldkiihlisfivnvtl*nli*elkhlwhssvldmmnvvsvkvmv
llvvlqiiviiiqfieptv*qqnvqimfallqhhiavqpnhvqlvfvhqvlvvqlfqkiv
*mkiivpkihviql*mlanmiqfqivsivpilvvslliivmnkyvqlmedhvk---

---fkl****rly*r*vfkywylsk*sn*rlcytitsfnwwnypsnhywcits*v*llsn
wskmfisqws*nly*tsnhwwysrinywlcwynnwqgyrslhriryr*stfm**isl*kr
ngmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*kskfhf**t*llw*iml*iht
slqtkrtltlkktkinilflffllyifikil*psqlisi*yyninikfivkfnnk*knnc
pi*t

Frame C:
ynckckc*lgfigfntwtklsi*flll*tshcrisykn*nifgiqvssi**mwcl*r*wy
fllysk*l***snl*nqlynskmfk*clryfstilqfnrtmyswslytrcwlfscskklc
k*kslyprfm*fnykclpt*snsrlyqlclywlyhy*ll**tsmfs*wkim*n---

---LNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPI
GQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRG
MECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFTP
VCKPKGHSL*kklkliyyffsfyyifllkfynqvn*fqfniti*tlsll*nliinkktta
pfk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL169 (SHL169Q) /CSM/SH/SHL1-C/SHL169Q.Seq.d/ 1112 0.0
SHK884 (SHK884Q) /CSM/SH/SHK8-D/SHK884Q.Seq.d/ 1112 0.0
SHJ893 (SHJ893Q) /CSM/SH/SHJ8-D/SHJ893Q.Seq.d/ 1112 0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/ 1112 0.0
SHJ668 (SHJ668Q) /CSM/SH/SHJ6-C/SHJ668Q.Seq.d/ 1112 0.0
SHG737 (SHG737Q) /CSM/SH/SHG7-B/SHG737Q.Seq.d/ 1112 0.0
SHG326 (SHG326Q) /CSM/SH/SHG3-B/SHG326Q.Seq.d/ 1112 0.0
SHG163 (SHG163Q) /CSM/SH/SHG1-C/SHG163Q.Seq.d/ 1112 0.0
SHF835 (SHF835Q) /CSM/SH/SHF8-B/SHF835Q.Seq.d/ 1112 0.0
SHF473 (SHF473Q) /CSM/SH/SHF4-D/SHF473Q.Seq.d/ 1112 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING INPROGRESS ***, 2 unordered pieces. 36 2e-04 13
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 42 0.023 8
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence. 38 0.032 10
AC122160|AC122160.21 Medicago truncatula clone mth2-23d6, complete sequence. 34 0.17 10
AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18. 42 0.20 5
BX323883|BX323883.14 Zebrafish DNA sequence from clone CH211-285M21 in linkage group 1. 38 0.40 10
AC110731|AC110731.10 Mus musculus chromosome 6, clone RP23-433J5, complete sequence. 34 0.57 10
Z69637|Z69637.1 Caenorhabditis elegans cosmid F35G2. 36 0.65 6
AF160181|AF160181.1 Arabidopsis thaliana BAC T14A16. 42 0.74 3
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 34 0.84 9
dna update 2004.10. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 400 e-110
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 231 3e-59
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 149 3e-34
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 146 2e-33
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 114 9e-24
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell... 104 7e-21
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 102 3e-20
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 101 5e-20
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 100 1e-19
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 95 6e-18
protein update 2009. 3.31
PSORT

psg: 0.75 gvh: 0.51 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: peroxisomal
4.0 %: mitochondrial

>> prediction for CHF818 is cyt

5' end seq. ID CHF818F
5' end seq.
>CHF818F.Seq
CATACAATTGCAAGTGCAAGTGTTAACTTGGATTTATTGGGTTTAACACCTGGACAAAAT
TATCCATTTGATTTCTTTTATTGTGAACGTCACACTGTAGAATCTCATATAAGAATTGAA
ACATCTTTGGCATTCAAGTGTCCTCGATATGATGAATGTGGTGTCTGTGAAGGTGATGGT
ACTTCTTGTTGTACTCCAAATAATTGTGATAATAATCCAATTTATAGAACCAACTGTATA
ACAGCAAAATGTTCAAATAATGTTTGCGTTACTTCAGCACCATATTGCAGTTCAACCGAA
CCATGTACAGTTGGTCTTTGTACACCAGGTGTTGGTTGTTCAGTTGTTCCAAAAAATTGT
GTAAATGAAAATCATTGTACCCAAGATTCATGTAATTCAACTATAAATGCTTGCCAACAT
GATCCAATTCCAGATTGTATCAATTGTGCCTATATTGGTTGTATCACTACTGATTATTGT
AATGAACAAGTATGTTCAGCTGATGGAAGATCATGTGAAACTNNNNNNNNNN
Length of 5' end seq. 532
3' end seq. ID CHF818Z
3' end seq.
>CHF818Z.Seq
NNNNNNNNNNTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAAT
ACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATT
GGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCA
ATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACT
GGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGT
CATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGA
GGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGT
TTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAA
AATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACA
CCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATTTC
TTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAATTT
AATATTACAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAACAACT
GCCCCATTTAAACA
Length of 3' end seq. 734
Connected seq. ID CHF818P
Connected seq.
>CHF818P.Seq
CATACAATTGCAAGTGCAAGTGTTAACTTGGATTTATTGGGTTTAACACCTGGACAAAAT
TATCCATTTGATTTCTTTTATTGTGAACGTCACACTGTAGAATCTCATATAAGAATTGAA
ACATCTTTGGCATTCAAGTGTCCTCGATATGATGAATGTGGTGTCTGTGAAGGTGATGGT
ACTTCTTGTTGTACTCCAAATAATTGTGATAATAATCCAATTTATAGAACCAACTGTATA
ACAGCAAAATGTTCAAATAATGTTTGCGTTACTTCAGCACCATATTGCAGTTCAACCGAA
CCATGTACAGTTGGTCTTTGTACACCAGGTGTTGGTTGTTCAGTTGTTCCAAAAAATTGT
GTAAATGAAAATCATTGTACCCAAGATTCATGTAATTCAACTATAAATGCTTGCCAACAT
GATCCAATTCCAGATTGTATCAATTGTGCCTATATTGGTTGTATCACTACTGATTATTGT
AATGAACAAGTATGTTCAGCTGATGGAAGATCATGTGAAACT----------TTTTAAAT
TGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACTGGTATTTGTCAAAAT
AATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACTATCCCTCCA
ACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAAAAATGTTTA
TTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGTATTCCAGAATTA
ACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCATTACACAGAATCAGGT
ACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTT
GTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAGATCTT
CATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCT
AGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCAGTTTGCAAACCAAAA
GGACACTCACTTTAAAAAAAACTAAAATTAATATATTATTTCTTTTCTTTTTATTATATA
TTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAATTTAATATTACAATATAAACA
TTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAACAACTGCCCCATTTAAACA
Length of connected seq. 1246
Full length Seq ID -
Full length Seq. -
Length of full length seq. -