>CHF808 (CHF808Q) /CSM/CH/CHF8-A/CHF808Q.Seq.d/
ATAAATNATTTAAATAACAACCACCATCATTATAATATAGTAATAATAAACCACATAAAC
ATATCATTAATATTAATAATAAAAAAAAAAAAAAAAAAAAAANTTTTTTTTTTTTTTNTT
CNCCCTTTCCCCCNAAAAAAAAAAAAAAAAAAAAANNNNAANTTTTTTTTTTTTNAAAAA
AAAAAAAANTTTTTAAAAAANTTTTTTTTTNNNNNAAAAAXXXXXXXXXXAATTACAAAG
CAATCATNTCAATGATGAATGGTACAATCGATACATCTCAATATGATNTTTTGAGATTGA
ATTTNTTNTTCCTTCATGATCAATCTTATAATAATCCAAATCCAAGTATTGACTTTAGTG
AAGTTGCAAACTNTTTNTTTTTAGATNTTCAAATTTGTATTACCGTTCAAGTGGTTGGTA
ATTTACCTTGTGTTGGTTTATCACCATACTTGGGTGGTCAAGTTCCAAATGCAGTATGGG
TTGAACTTTTAATTCCTTTCTCTGATNTTCAAGTTTATCCAAATGCTNTTATCAGTAGTA
TCACTTTCCAAACTCAAGTACAAGATCACCAAGGTGTTTTCTTTAT

INXLNNNHHHYNIVIINHINISLILIIKKKKKKKXFFFFXXPFPXKKKKKKXXXFFFFXK
KKXFLKXFFFXXK---

---NYKAIXSMMNGTIDTSQYDXLRLNXXFLHDQSYNNPNPSIDFSEVANXXFLDXQICI
TVQVVGNLPCVGLSPYLGGQVPNAVWVELLIPFSDXQVYPNAXISSITFQTQVQDHQGVF
F

Frame A:
INXLNNNHHHYNIVIINHINISLILIIKKKKKKKXFFFFXXPFPXKKKKKKXXXFFFFXK
KKXFLKXFFFXXK---

---NYKAIXSMMNGTIDTSQYDXLRLNXXFLHDQSYNNPNPSIDFSEVANXXFLDXQICI
TVQVVGNLPCVGLSPYLGGQVPNAVWVELLIPFSDXQVYPNAXISSITFQTQVQDHQGVF
F

Frame B:
*xi*itttiiii****tt*tyh*y***kkkkkkxffffxfxlspxkkkkkkxxxfffxkk
kkxf*kxffxxxk---

---itkqsxq**mvqsihlnmxf*d*ixxsfminliiiqiqvltlvklqtxxf*xfkfvl
pfkwlviylvlvyhhtwvvkfqmqyglnf*flslxfkfiqmllsvvslsklkykitkvfs
l

Frame C:
kxfk*qppsl*ysnnkphkhiininnkkkkkkkxffffxspfppkkkkkkkxxxfffxkk
kkxfkkxffxxk---

---lqsnhxndewynryisi*xfeiefxxps*sil**sksky*l**scklfxfrxsnlyy
rssgw*ftlcwfitilgwssskcsmg*tfnsfl*xsslskcxyq*yhfpnsstrsprcfl
y

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF808 (CHF808Q) /CSM/CH/CHF8-A/CHF808Q.Seq.d/                        605   e-172
SSJ359 (SSJ359Q) /CSM/SS/SSJ3-C/SSJ359Q.Seq.d/                        597   e-170
SSI756 (SSI756Q) /CSM/SS/SSI7-C/SSI756Q.Seq.d/                        597   e-170
CHR283 (CHR283Q) /CSM/CH/CHR2-D/CHR283Q.Seq.d/                        597   e-170
CHI503 (CHI503Q) /CSM/CH/CHI5-A/CHI503Q.Seq.d/                        597   e-170
CHF836 (CHF836Q) /CSM/CH/CHF8-B/CHF836Q.Seq.d/                        597   e-170
SSC357 (SSC357Q) /CSM/SS/SSC3-C/SSC357Q.Seq.d/                        585   e-166
CHS395 (CHS395Q) /CSM/CH/CHS3-D/CHS395Q.Seq.d/                        575   e-163
CHR809 (CHR809Q) /CSM/CH/CHR8-A/CHR809Q.Seq.d/                        575   e-163
AHL108 (AHL108Q) /CSM/AH/AHL1-A/AHL108Q.Seq.d/                        575   e-163

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC142517|AC142517.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 65 unordered pieces.    48   8e-04  2
CR659391|CR659391.1 Tetraodon nigroviridis full-length cDNA.       48   0.001  2
CF205115|CF205115.1 RR890915I0004_IIa_Ra_B08 Vitis sp. RR890915I Vitis hybrid cultivar cDNA clone RR890915I0004_IIa_Ra_B08 3', mRNA sequence.    44   0.002  2
CB341283|CB341283.1 CA32EN0001_IIIbR_E07 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0001_IIIbR_E07 3', mRNA sequence.    48   0.003  2
BE951605|BE951605.1 UI-M-CC0-ayc-f-01-0-UI.s1 NIH_BMAP_Ret1 Mus musculus cDNA clone UI-M-CC0-ayc-f-01-0-UI 3', mRNA sequence.    48   0.004  2
AF465309|AF465309.1 Dictyostelium discoideum ABC transporter ABCA.7 (abca7) gene, complete cds.    34   0.014  5
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12 section 3 of 9 of the complete sequence.    42   0.016  4
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           38   0.019  8
CF213724|CF213724.1 CGF1000808_C04 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0007_IR_C04 3', mRNA sequence.    42   0.020  2
AJ827051|AJ827051.1 Prunus persica EST, clone S310I7.              44   0.021  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001027_141(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch...    33   4.1

 psg: 0.90  gvh: 0.27  alm: 0.31  top: 0.87  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.71  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHF808 is nuc

>CHF808F.Seq
ATAAATNATTTAAATAACAACCACCATCATTATAATATAGTAATAATAAACCACATAAAC
ATATCATTAATATTAATAATAAAAAAAAAAAAAAAAAAAAAANTTTTTTTTTTTTTTNTT
CNCCCTTTCCCCCNAAAAAAAAAAAAAAAAAAAAANNNNAANTTTTTTTTTTTTNAAAAA
AAAAAAAANTTTTTAAAAAANTTTTTTTTTNNNNNAAAAANNNNNNNNNN

>CHF808Z.Seq
NNNNNNNNNNAATTACAAAGCAATCATNTCAATGATGAATGGTACAATCGATACATCTCA
ATATGATNTTTTGAGATTGAATTTNTTNTTCCTTCATGATCAATCTTATAATAATCCAAA
TCCAAGTATTGACTTTAGTGAAGTTGCAAACTNTTTNTTTTTAGATNTTCAAATTTGTAT
TACCGTTCAAGTGGTTGGTAATTTACCTTGTGTTGGTTTATCACCATACTTGGGTGGTCA
AGTTCCAAATGCAGTATGGGTTGAACTTTTAATTCCTTTCTCTGATNTTCAAGTTTATCC
AAATGCTNTTATCAGTAGTATCACTTTCCAAACTCAAGTACAAGATCACCAAGGTGTTTT
CTTTAT

>CHF808P.Seq
ATAAATNATTTAAATAACAACCACCATCATTATAATATAGTAATAATAAACCACATAAAC
ATATCATTAATATTAATAATAAAAAAAAAAAAAAAAAAAAAANTTTTTTTTTTTTTTNTT
CNCCCTTTCCCCCNAAAAAAAAAAAAAAAAAAAAANNNNAANTTTTTTTTTTTTNAAAAA
AAAAAAAANTTTTTAAAAAANTTTTTTTTTNNNNNAAAAA----------AATTACAAAG
CAATCATNTCAATGATGAATGGTACAATCGATACATCTCAATATGATNTTTTGAGATTGA
ATTTNTTNTTCCTTCATGATCAATCTTATAATAATCCAAATCCAAGTATTGACTTTAGTG
AAGTTGCAAACTNTTTNTTTTTAGATNTTCAAATTTGTATTACCGTTCAAGTGGTTGGTA
ATTTACCTTGTGTTGGTTTATCACCATACTTGGGTGGTCAAGTTCCAAATGCAGTATGGG
TTGAACTTTTAATTCCTTTCTCTGATNTTCAAGTTTATCCAAATGCTNTTATCAGTAGTA
TCACTTTCCAAACTCAAGTACAAGATCACCAAGGTGTTTTCTTTAT