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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF787
Library CH
(Link to library)
Clone ID CHF787
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12951-1|Contig-U15517-1
Original site URL
Representative seq. ID CHF787P
(Link to Original site)
Representative DNA sequence 
>CHF787 (CHF787Q) /CSM/CH/CHF7-D/CHF787Q.Seq.d/
GTAACATAAAACGTAATTCACCACATCTTTTAAATGCAAGTCTTGGTAATAATTTTCACA
CTCATTCCACAGATTCAATAGTTGCAACTTTAAAACCAATTATCGATGAAGAAAATAATG
GCAATAATAATAATAATACAACACGCATTACATTAACATCATCAAATGGTAATGAATCAT
GTAATGGTAGTTTTTCATCATCAATTTCATTTGAAATGGTAAATAAAGAATCCGATTCCG
ATAATCAATATTCAACATCCTCTTCAACAACTTCTTCAACCTCAGCAACAAGTAATAGTC
ATTCTTTAAATAATAGACCACCATCGCCAATGGAAAACTTAAATAAATCACCTTCAACAA
TTGTATCATCATCATCTTCATCATCATCATCATCTTCTAGTTCATCAACCACTTCCAGTT
CATCAACCACAACTACTACAACTACAACACCACTACCACCACCAACCACAACAACAAATA
ATCGTTTATCAGGTAXXXXXXXXXXANAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACCATTNCCAACAGNACCATTATNACAATNNCAANAACAACAACAACCNN
TATTTAGNGAAAGNATAAAATTCATTAAANAGGNNTTTCAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
NIKRNSPHLLNASLGNNFHTHSTDSIVATLKPIIDEENNGNNNNNTTRITLTSSNGNESC
NGSFSSSISFEMVNKESDSDNQYSTSSSTTSSTSATSNSHSLNNRPPSPMENLNKSPSTI
VSSSSSSSSSSSSSSTTSSSSTTTTTTTTPLPPPTTTTNNRLSG---

---XQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPXPTXPLXQXQXQQQPXFXEXI
KFIKXXFQ
Translated Amino Acid sequence (All Frames) 
Frame A:
vt*nvihhif*mqvlviiftlipqiq*lql*nqlsmkkimaiiiiiqhalh*hhqmvmnh
vmvvfhhqfhlkw*iknpipiiniqhplqqllqpqqqvivil*iidhhrqwkt*inhlqq
lyhhhlhhhhhllvhqplpvhqpqllqlqhhyhhqpqqqiivyqv---

---xtttttttttttttttttttttttttttttttttttixnxtixtxxxttttxi*xkx
kih*xgxsn

Frame B:
*hkt*fttsfkcksw**fshsfhrfnscnfktnyr*rk*wq****ynthyiniikw**im
*w*ffiinfi*ngk*rirfr*sifnilfnnffnlsnk**sffk**ttiangklk*itfnn
ciiiifiiiiif*finhfqfinhnyynyntttttnhnnk*sfir---

---XQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPXPTXPLXQXQXQQQPXFXEXI
KFIKXXFQ

Frame C:
NIKRNSPHLLNASLGNNFHTHSTDSIVATLKPIIDEENNGNNNNNTTRITLTSSNGNESC
NGSFSSSISFEMVNKESDSDNQYSTSSSTTSSTSATSNSHSLNNRPPSPMENLNKSPSTI
VSSSSSSSSSSSSSSTTSSSSTTTTTTTTPLPPPTTTTNNRLSG---

---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnhxqqxhyxnxxnnnnxylxkx*
nslxrxfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF787 (CHF787Q) /CSM/CH/CHF7-D/CHF787Q.Seq.d/                        722   0.0
CHE212 (CHE212Q) /CSM/CH/CHE2-A/CHE212Q.Seq.d/                        371   e-101
VFN822 (VFN822Q) /CSM/VF/VFN8-A/VFN822Q.Seq.d/                         46   7e-04
VFM202 (VFM202Q) /CSM/VF/VFM2-A/VFM202Q.Seq.d/                         46   7e-04
SSI688 (SSI688Q) /CSM/SS/SSI6-D/SSI688Q.Seq.d/                         46   7e-04
SSB589 (SSB589Q) /CSM/SS/SSB5-D/SSB589Q.Seq.d/                         46   7e-04
SFI365 (SFI365Q) /CSM/SF/SFI3-C/SFI365Q.Seq.d/                         46   7e-04
SFF224 (SFF224Q) /CSM/SF/SFF2-A/SFF224Q.Seq.d/                         46   7e-04
SFC423 (SFC423Q) /CSM/SF/SFC4-A/SFC423Q.Seq.d/                         46   7e-04
AFG188 (AFG188Q) /CSM/AF/AFG1-D/AFG188Q.Seq.d/                         46   7e-04
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116922|AC116922.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence.    38   4e-04  6
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    42   4e-04  3
AC115581|AC115581.3 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.    38   4e-04  7
AC115594|AC115594.2 Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4, complete sequence.    42   5e-04  6
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.    34   6e-04  8
BX186083|BX186083.1 Danio rerio genomic clone DKEY-189O21, genomic survey sequence.    42   7e-04  3
AC148640|AC148640.3 Callithrix jacchus clone CH259-78E8, WORKING DRAFT SEQUENCE, 6 ordered pieces.    36   9e-04  6
BX649578|BX649578.14 Zebrafish DNA sequence from clone CH211-196L7 in linkage group 18.    36   0.001  8
BX088526|BX088526.6 Zebrafish DNA sequence from clone CH211-51H9 in linkage group 8.    42   0.001  7
BX004836|BX004836.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-176O3.    44   0.002  7
dna update 2004.10. 1
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 376,634,284
protein update 2009. 3.31
PSORT 

 psg: 0.79  gvh: 0.31  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  4.0 %: vacuolar

>> prediction for CHF787 is nuc
5' end seq. ID CHF787F
5' end seq. 
>CHF787F.Seq
GTAACATAAAACGTAATTCACCACATCTTTTAAATGCAAGTCTTGGTAATAATTTTCACA
CTCATTCCACAGATTCAATAGTTGCAACTTTAAAACCAATTATCGATGAAGAAAATAATG
GCAATAATAATAATAATACAACACGCATTACATTAACATCATCAAATGGTAATGAATCAT
GTAATGGTAGTTTTTCATCATCAATTTCATTTGAAATGGTAAATAAAGAATCCGATTCCG
ATAATCAATATTCAACATCCTCTTCAACAACTTCTTCAACCTCAGCAACAAGTAATAGTC
ATTCTTTAAATAATAGACCACCATCGCCAATGGAAAACTTAAATAAATCACCTTCAACAA
TTGTATCATCATCATCTTCATCATCATCATCATCTTCTAGTTCATCAACCACTTCCAGTT
CATCAACCACAACTACTACAACTACAACACCACTACCACCACCAACCACAACAACAAATA
ATCGTTTATCAGGTANNNNNNNNNN
Length of 5' end seq. 505
3' end seq. ID CHF787Z
3' end seq. 
>CHF787Z.Seq
NNNNNNNNNNANAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACCAT
TNCCAACAGNACCATTATNACAATNNCAANAACAACAACAACCNNTATTTAGNGAAAGNA
TAAAATTCATTAAANAGGNNTTTCAAAT
Length of 3' end seq. 208
Connected seq. ID CHF787P
Connected seq. 
>CHF787P.Seq
GTAACATAAAACGTAATTCACCACATCTTTTAAATGCAAGTCTTGGTAATAATTTTCACA
CTCATTCCACAGATTCAATAGTTGCAACTTTAAAACCAATTATCGATGAAGAAAATAATG
GCAATAATAATAATAATACAACACGCATTACATTAACATCATCAAATGGTAATGAATCAT
GTAATGGTAGTTTTTCATCATCAATTTCATTTGAAATGGTAAATAAAGAATCCGATTCCG
ATAATCAATATTCAACATCCTCTTCAACAACTTCTTCAACCTCAGCAACAAGTAATAGTC
ATTCTTTAAATAATAGACCACCATCGCCAATGGAAAACTTAAATAAATCACCTTCAACAA
TTGTATCATCATCATCTTCATCATCATCATCATCTTCTAGTTCATCAACCACTTCCAGTT
CATCAACCACAACTACTACAACTACAACACCACTACCACCACCAACCACAACAACAAATA
ATCGTTTATCAGGTA----------ANAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACCATTNCCAACAGNACCATTATNACAATNNCAANAACAACAACAACCNN
TATTTAGNGAAAGNATAAAATTCATTAAANAGGNNTTTCAAAT
Length of connected seq. 693
Full length Seq ID -
Full length Seq. -
Length of full length seq. -