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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF760
Library CH
(Link to library)
Clone ID CHF760
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11723-1
Original site URL
Representative seq. ID CHF760P
(Link to Original site)
Representative DNA sequence 
>CHF760 (CHF760Q) /CSM/CH/CHF7-C/CHF760Q.Seq.d/
ATATGGGTTTATAAAAGACTGCGTAGGGATAAATAATAATGGAAAGTAATAAATCATCAT
CACATGGAGATGTATCAACTTCTCCATCATTTTTAAATAATCATCATCAATTTAATAATG
GTGGTGATATAATCCCAAAAAAGAAAAAAAATAGGATAATGCATGTTGGTTCTTATGAAG
TTGGCAAAACTTTAGGTAATGGTACATTTGGTAAAGTTAAATTAGGTACAAATATTTGTA
CAAAAGAAAATGTTGCAATTAAATTTATAAAAAATAATAAATTATCAGGAAAACAAAAAG
AAACATGTTTTAGAGAAATTGATATTATGAAATTATTAGATCATCCAAATATAGTGAAAT
TATTAGATGTTGTTGATAAAAGAGAAGAAGAAGGTACAACTTATTTAATAGTTGAATATG
TATCAGGTGGTGAATTATTTGATTATATAGTTGCACGTGAATATATTAAAGAGAAAGAAG
CAAGAAAATTTTTTAGACAAATGATATCGXXXXXXXXXXAATTTAAGAAGAAATTCAATT
GCAGTTTCAACATTTATGGAAGATGAACCAAATGAAATGCCAATTAATAATTTGTATAAA
ATGAATGAACAAATTCAACAACAACCAATTATTGGTGGTAGTGGTAATGTAATGAGATCA
CAATTTAATCAAACATTACCAACAATTGATCAACAACCAGTTATTGAAGCACCAAAAACG
AGAAGAATGAGTTTAGATTCACGTATGTTAAATGGTGATCAACAATCATTGGTTGAAAAG
AATCAACATATGGCAAGTCCAAGAACTTCGAAAGGTATATTTAAATNTTCAACTACCACT
ACTAAATCACCAGAGAAAACAATTATCGAATTGAAAAGATCTNTCGAAGAAAGTGGTTTA
TTCACTAAAAAGAAAGGTCCTTACCTTTTNTTATGTTTTGATGAAGATAACTCTGTTAAA
TTTCAAATCGAAATCGTTAAAATTTGTAACCTTGATTTAACTGGTATTCAATTAAAAAGA
TTAAGTGGCGATACTTGGAAATATAAAGATATTTGTACTGAATTAGTTGAATCAATGAAA
TTATAAGTTTTTTTTTAAAAAAAAAATAAATAGTAATAAATAATAAAAAAATAATAAAAA
TAAATAAATAAAATAATAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
mgl*kta*g*IIMESNKSSSHGDVSTSPSFLNNHHQFNNGGDIIPKKKKNRIMHVGSYEV
GKTLGNGTFGKVKLGTNICTKENVAIKFIKNNKLSGKQKETCFREIDIMKLLDHPNIVKL
LDVVDKREEEGTTYLIVEYVSGGELFDYIVAREYIKEKEARKFFRQMIS---

---NLRRNSIAVSTFMEDEPNEMPINNLYKMNEQIQQQPIIGGSGNVMRSQFNQTLPTID
QQPVIEAPKTRRMSLDSRMLNGDQQSLVEKNQHMASPRTSKGIFKXSTTTTKSPEKTIIE
LKRSXEESGLFTKKKGPYLXLCFDEDNSVKFQIEIVKICNLDLTGIQLKRLSGDTWKYKD
ICTELVESMKL*vff*kknk***iikk**k*inkii
Translated Amino Acid sequence (All Frames) 
Frame A:
iwvykrlrrdk**wkvinhhhmemyqllhhf*iiiinlimvvi*sqkrkkig*cmlvlmk
lakl*vmvhlvkln*vqifvqkkmlqlnl*kiinyqenkkkhvleklil*ny*iiqi**n
y*mllikekkkvqli**lnmyqvvnylii*lhvnilkrkkqenfldk*y---

---NLRRNSIAVSTFMEDEPNEMPINNLYKMNEQIQQQPIIGGSGNVMRSQFNQTLPTID
QQPVIEAPKTRRMSLDSRMLNGDQQSLVEKNQHMASPRTSKGIFKXSTTTTKSPEKTIIE
LKRSXEESGLFTKKKGPYLXLCFDEDNSVKFQIEIVKICNLDLTGIQLKRLSGDTWKYKD
ICTELVESMKL*vff*kknk***iikk**k*inkii

Frame B:
ygfikdcvginnngk**iiitwrcinfsiifk*sssi**ww*ynpkkekk*dnacwfl*s
wqnfr*wyiw*s*irykylykrkccn*iykk**iirktkrnmf*rn*yyeiirsskysei
ircc**krrrrynlfns*icirw*ii*lysct*iy*rerskkif*tndi---

---i*eeiqlqfqhlwkmnqmkcqliicik*mnkfnnnqllvvvvm**dhnlikhyqqli
nnqllkhqkree*v*ihvc*mvinnhwlkriniwqvqelrkvylnxqlpllnhqrkqlsn
*kdlskkvvyslkrkvltfxyvlmkitllnfkskslkfvtli*lvfn*kd*vailgniki
fvln*lnq*nykfffkkkinsnk**knnknk*ik**

Frame C:
mgl*kta*g*IIMESNKSSSHGDVSTSPSFLNNHHQFNNGGDIIPKKKKNRIMHVGSYEV
GKTLGNGTFGKVKLGTNICTKENVAIKFIKNNKLSGKQKETCFREIDIMKLLDHPNIVKL
LDVVDKREEEGTTYLIVEYVSGGELFDYIVAREYIKEKEARKFFRQMIS---

---fkkkfncsfniygr*tk*nan**fv*ne*tnstttnyww*w*cneiti*snitnn*s
ttsy*stkneknefrftyvkw*stiig*kestygksknferyi*xfnyhy*itrennyri
ekixrrkwfih*kerslpfxmf**r*lc*isnrnr*nl*p*fnwysikkikwrylei*ry
ly*is*ineiisfflkkk*ivinnkkiikink*nnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF760 (CHF760Q) /CSM/CH/CHF7-C/CHF760Q.Seq.d/                       1465   0.0
CHN147 (CHN147Q) /CSM/CH/CHN1-B/CHN147Q.Seq.d/                       1088   0.0
CHR195 (CHR195Q) /CSM/CH/CHR1-D/CHR195Q.Seq.d/                       1080   0.0
CHO513 (CHO513Q) /CSM/CH/CHO5-A/CHO513Q.Seq.d/                       1076   0.0
CHN820 (CHN820Q) /CSM/CH/CHN8-A/CHN820Q.Seq.d/                       1074   0.0
CHH704 (CHH704Q) /CSM/CH/CHH7-A/CHH704Q.Seq.d/                       1065   0.0
CHP810 (CHP810Q) /CSM/CH/CHP8-A/CHP810Q.Seq.d/                       1055   0.0
CHI134 (CHI134Q) /CSM/CH/CHI1-B/CHI134Q.Seq.d/                       1035   0.0
CHO603 (CHO603Q) /CSM/CH/CHO6-A/CHO603Q.Seq.d/                        952   0.0
SLC215 (SLC215Q) /CSM/SL/SLC2-A/SLC215Q.Seq.d/                        698   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    42   7e-08  16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   3e-07  22
Z96102|Z96102.1 Caenorhabditis elegans fosmid H39E23.              46   5e-06  2
U22183|U22183.1 Caenorhabditis elegans serine/threonine kinase (par-1) mRNA, complete cds.    46   5e-06  2
U40858|U40858.1 Caenorhabditis elegans serine/threonine kinase (par-1) mRNA, alternative splice form, complete cds.    46   5e-06  2
C69978|C69978.1 C.elegans cDNA clone yk370f1 : 5' end, single read.    46   6e-06  2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44   7e-06  23
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   1e-05  27
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   2e-05  21
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    32   2e-05  19
dna update 2004. 9.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC043730_1(BC043730|pid:none) Xenopus laevis MAP/microtubule aff...   122   2e-26
AB071963_1(AB071963|pid:none) Xenopus laevis MARK2 mRNA for seri...   122   2e-26
AK045329_1(AK045329|pid:none) Mus musculus 9.5 days embryo parth...   122   3e-26
U64205_1(U64205|pid:none) Homo sapiens Cdc25C associated protein...   122   3e-26
BX161395_1(BX161395|pid:none) human full-length cDNA clone CS0DC...   122   3e-26
BC058556_1(BC058556|pid:none) Mus musculus MAP/microtubule affin...   122   3e-26
AK172444_1(AK172444|pid:none) Mus musculus activated spleen cDNA...   122   3e-26
(Q7KZI7) RecName: Full=Serine/threonine-protein kinase MARK2;   ...   122   3e-26
AK220191_1(AK220191|pid:none) Mus musculus mRNA for mKIAA4207 pr...   122   3e-26
G01025(G01025)serine/threonine protein kinase - human                 122   3e-26
protein update 2009. 3.31
PSORT 

 psg: 0.69  gvh: 0.32  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.18  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHF760 is nuc
5' end seq. ID CHF760F
5' end seq. 
>CHF760F.Seq
ATATGGGTTTATAAAAGACTGCGTAGGGATAAATAATAATGGAAAGTAATAAATCATCAT
CACATGGAGATGTATCAACTTCTCCATCATTTTTAAATAATCATCATCAATTTAATAATG
GTGGTGATATAATCCCAAAAAAGAAAAAAAATAGGATAATGCATGTTGGTTCTTATGAAG
TTGGCAAAACTTTAGGTAATGGTACATTTGGTAAAGTTAAATTAGGTACAAATATTTGTA
CAAAAGAAAATGTTGCAATTAAATTTATAAAAAATAATAAATTATCAGGAAAACAAAAAG
AAACATGTTTTAGAGAAATTGATATTATGAAATTATTAGATCATCCAAATATAGTGAAAT
TATTAGATGTTGTTGATAAAAGAGAAGAAGAAGGTACAACTTATTTAATAGTTGAATATG
TATCAGGTGGTGAATTATTTGATTATATAGTTGCACGTGAATATATTAAAGAGAAAGAAG
CAAGAAAATTTTTTAGACAAATGATATCGNNNNNNNNNN
Length of 5' end seq. 519
3' end seq. ID CHF760Z
3' end seq. 
>CHF760Z.Seq
NNNNNNNNNNAATTTAAGAAGAAATTCAATTGCAGTTTCAACATTTATGGAAGATGAACC
AAATGAAATGCCAATTAATAATTTGTATAAAATGAATGAACAAATTCAACAACAACCAAT
TATTGGTGGTAGTGGTAATGTAATGAGATCACAATTTAATCAAACATTACCAACAATTGA
TCAACAACCAGTTATTGAAGCACCAAAAACGAGAAGAATGAGTTTAGATTCACGTATGTT
AAATGGTGATCAACAATCATTGGTTGAAAAGAATCAACATATGGCAAGTCCAAGAACTTC
GAAAGGTATATTTAAATNTTCAACTACCACTACTAAATCACCAGAGAAAACAATTATCGA
ATTGAAAAGATCTNTCGAAGAAAGTGGTTTATTCACTAAAAAGAAAGGTCCTTACCTTTT
NTTATGTTTTGATGAAGATAACTCTGTTAAATTTCAAATCGAAATCGTTAAAATTTGTAA
CCTTGATTTAACTGGTATTCAATTAAAAAGATTAAGTGGCGATACTTGGAAATATAAAGA
TATTTGTACTGAATTAGTTGAATCAATGAAATTATAAGTTTTTTTTTAAAAAAAAAATAA
ATAGTAATAAATAATAAAAAAATAATAAAAATAAATAAATAAAATAATAAA
Length of 3' end seq. 651
Connected seq. ID CHF760P
Connected seq. 
>CHF760P.Seq
ATATGGGTTTATAAAAGACTGCGTAGGGATAAATAATAATGGAAAGTAATAAATCATCAT
CACATGGAGATGTATCAACTTCTCCATCATTTTTAAATAATCATCATCAATTTAATAATG
GTGGTGATATAATCCCAAAAAAGAAAAAAAATAGGATAATGCATGTTGGTTCTTATGAAG
TTGGCAAAACTTTAGGTAATGGTACATTTGGTAAAGTTAAATTAGGTACAAATATTTGTA
CAAAAGAAAATGTTGCAATTAAATTTATAAAAAATAATAAATTATCAGGAAAACAAAAAG
AAACATGTTTTAGAGAAATTGATATTATGAAATTATTAGATCATCCAAATATAGTGAAAT
TATTAGATGTTGTTGATAAAAGAGAAGAAGAAGGTACAACTTATTTAATAGTTGAATATG
TATCAGGTGGTGAATTATTTGATTATATAGTTGCACGTGAATATATTAAAGAGAAAGAAG
CAAGAAAATTTTTTAGACAAATGATATCG----------AATTTAAGAAGAAATTCAATT
GCAGTTTCAACATTTATGGAAGATGAACCAAATGAAATGCCAATTAATAATTTGTATAAA
ATGAATGAACAAATTCAACAACAACCAATTATTGGTGGTAGTGGTAATGTAATGAGATCA
CAATTTAATCAAACATTACCAACAATTGATCAACAACCAGTTATTGAAGCACCAAAAACG
AGAAGAATGAGTTTAGATTCACGTATGTTAAATGGTGATCAACAATCATTGGTTGAAAAG
AATCAACATATGGCAAGTCCAAGAACTTCGAAAGGTATATTTAAATNTTCAACTACCACT
ACTAAATCACCAGAGAAAACAATTATCGAATTGAAAAGATCTNTCGAAGAAAGTGGTTTA
TTCACTAAAAAGAAAGGTCCTTACCTTTTNTTATGTTTTGATGAAGATAACTCTGTTAAA
TTTCAAATCGAAATCGTTAAAATTTGTAACCTTGATTTAACTGGTATTCAATTAAAAAGA
TTAAGTGGCGATACTTGGAAATATAAAGATATTTGTACTGAATTAGTTGAATCAATGAAA
TTATAAGTTTTTTTTTAAAAAAAAAATAAATAGTAATAAATAATAAAAAAATAATAAAAA
TAAATAAATAAAATAATAAA
Length of connected seq. 1150
Full length Seq ID -
Full length Seq. -
Length of full length seq. -