CHF749
Library CH
(Link to library)
Clone ID CHF749
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14303-1
Original site URL
Representative seq. ID CHF749P
(Link to Original site)
Representative DNA sequence
>CHF749 (CHF749Q) /CSM/CH/CHF7-C/CHF749Q.Seq.d/
ATTAATAAATCTCAAAAAAAAAAGATACTTCTCAAAAAAAATAAGATCTTTTTGAATAAA
ATAAACAATACACAAATACATATATATATAAATTAATAAATAAATAAAAATAAATAAATA
ATACATATATATATATAAATATAAATATAAANGGGTANATCACCANAANAANCCCANCCA
TTGGTTGGTGGAGGAGGAGGAGGAAAATCAAATCCATATAGTTTTATGTATCCAGGTAGN
GGTAGTATTTCAACATTAAATATTAANGGTAGTTCAAATTCATACCCATTGGATAATGTA
CTTCAACATAAXXXXXXXXXXTCACTTCGTAGAGATATTAAGTCACCATGGATTGGCGTA
TTGATTGCATTGTTTTCCGTTATTCTTGGTTTAATTTCAAATATTATCAAGGATGATTCA
ATCGTTTACTACTNTGGTATTTACTTTGGTGTTACCATTTTCATTATCATGTTAATGTTT
ATTCGTGCACGTATTCTCAAGTTATTCCTTTTCTTCACTCAAATCATTNTAAGTGGTGCT
GGTCGTGATCGTGTTGCTCGTTGGATTGGTGATGTCATTAAAAAGATTAACTCTCAACCA
GTTGTCTTCTNTGCTTCAAAGGATGATCCAGCCTATTTGAATAAAGCCATCCTTTACATT
CGTGATAATGAACAAACCAATTGGGTTAGAGTCGTACATTGTTGTAATGAAGAAGAATCA
ACCGATTCTTTCTCTTCAACTATGGAATTCTTAGATAAATGTTATCCAAAGATTAGATTA
GATCTCATTCGTGTCAACGCTGAATTCAATGCTTCCACTGTTCAAAAGATCTCTCAAGAA
TTAAAGATGACTTAANCTTTTGTTTCGTATCTTGTATTAAAGACCGTGATGATGGTNATC
CTTCAA
sequence update 2002.10.25
Translated Amino Acid sequence
inksqkkkillkknkiflnkinntqihiyin**inknk*iihiyi*i*i*XGXSPXXXXP
LVGGGGGGKSNPYSFMYPGXGSISTLNIXGSSNSYPLDNVLQH---

---SLRRDIKSPWIGVLIALFSVILGLISNIIKDDSIVYYXGIYFGVTIFIIMLMFIRAR
ILKLFLFFTQIIXSGAGRDRVARWIGDVIKKINSQPVVFXASKDDPAYLNKAILYIRDNE
QTNWVRVVHCCNEEESTDSFSSTMEFLDKCYPKIRLDLIRVNAEFNASTVQKISQELKMT
*xfvsylvlktvmmvilq


Translated Amino Acid sequence (All Frames)
Frame A:
inksqkkkillkknkiflnkinntqihiyin**inknk*iihiyi*i*i*XGXSPXXXXP
LVGGGGGGKSNPYSFMYPGXGSISTLNIXGSSNSYPLDNVLQH---

---SLRRDIKSPWIGVLIALFSVILGLISNIIKDDSIVYYXGIYFGVTIFIIMLMFIRAR
ILKLFLFFTQIIXSGAGRDRVARWIGDVIKKINSQPVVFXASKDDPAYLNKAILYIRDNE
QTNWVRVVHCCNEEESTDSFSSTMEFLDKCYPKIRLDLIRVNAEFNASTVQKISQELKMT
*xfvsylvlktvmmvilq

Frame B:
linlkkkryfskkirsf*ik*tihkyiyi*ink*ikink*yiyiykykykxvxhxxxpxh
wlveeeeenqihivlciqvxvvfqh*ilxvvqihthwimyfni---

---hfveilshhglay*lhcfplflv*fqilsrmiqsfttxvftlvlpfslsc*clfvhv
fssysfsslksx*vvlvvivllvglvmslkrltlnqlssxlqrmiqpi*ikpsftfvimn
kpiglesyivvmkknqpilslqlwns*inviqrld*isfvstlnsmlplfkrslkn*r*l
xllfrily*rp**wxsf

Frame C:
**iskkkdtsqkk*dlfe*nkqytntyiyklink*k*inntyiyininixgxitxxxpxi
gwwrrrrkiksi*fyvsr*x*yfniky*x*fkfipig*ctst*---

---ts*ry*vtmdwridcivfryswfnfkyyqg*fnrlllwyllwcyhfhyhvnvyscty
sqvipflhsnhxkwcws*sccsldw*ch*kd*lstscllcfkg*sslfe*shplhs***t
nqlg*srtll**rrinrfflfnygilr*mlskd*irshscqr*iqcfhcskdlsrikddl
xfcfvscikdrddgxps

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHF749 (CHF749Q) /CSM/CH/CHF7-C/CHF749Q.Seq.d/ 1364 0.0
VHK267 (VHK267Q) /CSM/VH/VHK2-C/VHK267Q.Seq.d/ 1110 0.0
VHI612 (VHI612Q) /CSM/VH/VHI6-A/VHI612Q.Seq.d/ 1110 0.0
CHI770 (CHI770Q) /CSM/CH/CHI7-C/CHI770Q.Seq.d/ 1102 0.0
VFI245 (VFI245Q) /CSM/VF/VFI2-B/VFI245Q.Seq.d/ 1100 0.0
CHG858 (CHG858Q) /CSM/CH/CHG8-C/CHG858Q.Seq.d/ 1100 0.0
VHI627 (VHI627Q) /CSM/VH/VHI6-B/VHI627Q.Seq.d/ 1092 0.0
SHA452 (SHA452Q) /CSM/SH/SHA4-C/SHA452Q.Seq.d/ 1090 0.0
CHR455 (CHR455Q) /CSM/CH/CHR4-C/CHR455Q.Seq.d/ 1086 0.0
CHM162 (CHM162Q) /CSM/CH/CHM1-C/CHM162Q.Seq.d/ 1080 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116925|AC116925.2 Dictyostelium discoideum chromosome 2 map 4189423-4228998 strain AX4, complete sequence. 1027 0.0 2
AC109784|AC109784.2 Rattus norvegicus clone RP31-480K1 strain Brown Norway, WORKING DRAFT SEQUENCE, 7 ordered pieces. 40 0.018 3
AC148857|AC148857.2 Otolemur garnettii clone CH256-549M15, WORKING DRAFT SEQUENCE, 3 ordered pieces. 40 0.079 6
AC148856|AC148856.2 Otolemur garnettii clone CH256-528G23, WORKING DRAFT SEQUENCE, 2 ordered pieces. 40 0.11 4
CL697164|CL697164.1 SP__Ba0007F18.r SP__Ba Sorghum propinquum genomic clone SP__Ba0007F18 3', genomic survey sequence. 40 0.17 2
AC087131|AC087131.1 Mus musculus clone RP23-113J6, WORKING DRAFT SEQUENCE, 15 unordered pieces. 36 0.20 7
AC096277|AC096277.8 Rattus norvegicus clone CH230-51N6, WORKING DRAFT SEQUENCE, 5 unordered pieces. 40 0.24 4
AC004710|AC004710.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 2 unordered pieces. 36 0.43 6
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 36 0.51 9
CN139979|CN139979.1 OX1_33_G02.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_33_G02_A002 3', mRNA sequence. 40 0.58 2
dna update 2004. 9.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116925_7(AC116925|pid:none) Dictyostelium discoideum chromosom... 345 1e-99
CT025834_28(CT025834|pid:none) uncultured sulfate-reducing bacte... 88 3e-16
CR522870_2116(CR522870|pid:none) Desulfotalea psychrophila LSv54... 67 8e-10
CP000685_2780(CP000685|pid:none) Flavobacterium johnsoniae UW101... 67 1e-09
AC149266_12(AC149266|pid:none) Solanum demissum chromosome 5 clo... 35 4.3

protein update 2008.10.29
PSORT

psg: 0.87 gvh: 0.50 alm: 0.19 top: 0.37 tms: 0.13 mit: 0.13 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: endoplasmic reticulum
16.0 %: mitochondrial
12.0 %: plasma membrane
8.0 %: nuclear
8.0 %: extracellular, including cell wall
4.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CHF749 is end

5' end seq. ID CHF749F
5' end seq.
>CHF749F.Seq
ATTAATAAATCTCAAAAAAAAAAGATACTTCTCAAAAAAAATAAGATCTTTTTGAATAAA
ATAAACAATACACAAATACATATATATATAAATTAATAAATAAATAAAAATAAATAAATA
ATACATATATATATATAAATATAAATATAAANGGGTANATCACCANAANAANCCCANCCA
TTGGTTGGTGGAGGAGGAGGAGGAAAATCAAATCCATATAGTTTTATGTATCCAGGTAGN
GGTAGTATTTCAACATTAAATATTAANGGTAGTTCAAATTCATACCCATTGGATAATGTA
CTTCAACATAANNNNNNNNNN
Length of 5' end seq. 321
3' end seq. ID CHF749Z
3' end seq.
>CHF749Z.Seq
NNNNNNNNNNTCACTTCGTAGAGATATTAAGTCACCATGGATTGGCGTATTGATTGCATT
GTTTTCCGTTATTCTTGGTTTAATTTCAAATATTATCAAGGATGATTCAATCGTTTACTA
CTNTGGTATTTACTTTGGTGTTACCATTTTCATTATCATGTTAATGTTTATTCGTGCACG
TATTCTCAAGTTATTCCTTTTCTTCACTCAAATCATTNTAAGTGGTGCTGGTCGTGATCG
TGTTGCTCGTTGGATTGGTGATGTCATTAAAAAGATTAACTCTCAACCAGTTGTCTTCTN
TGCTTCAAAGGATGATCCAGCCTATTTGAATAAAGCCATCCTTTACATTCGTGATAATGA
ACAAACCAATTGGGTTAGAGTCGTACATTGTTGTAATGAAGAAGAATCAACCGATTCTTT
CTCTTCAACTATGGAATTCTTAGATAAATGTTATCCAAAGATTAGATTAGATCTCATTCG
TGTCAACGCTGAATTCAATGCTTCCACTGTTCAAAAGATCTCTCAAGAATTAAAGATGAC
TTAANCTTTTGTTTCGTATCTTGTATTAAAGACCGTGATGATGGTNATCCTTCAA
Length of 3' end seq. 595
Connected seq. ID CHF749P
Connected seq.
>CHF749P.Seq
ATTAATAAATCTCAAAAAAAAAAGATACTTCTCAAAAAAAATAAGATCTTTTTGAATAAA
ATAAACAATACACAAATACATATATATATAAATTAATAAATAAATAAAAATAAATAAATA
ATACATATATATATATAAATATAAATATAAANGGGTANATCACCANAANAANCCCANCCA
TTGGTTGGTGGAGGAGGAGGAGGAAAATCAAATCCATATAGTTTTATGTATCCAGGTAGN
GGTAGTATTTCAACATTAAATATTAANGGTAGTTCAAATTCATACCCATTGGATAATGTA
CTTCAACATAA----------TCACTTCGTAGAGATATTAAGTCACCATGGATTGGCGTA
TTGATTGCATTGTTTTCCGTTATTCTTGGTTTAATTTCAAATATTATCAAGGATGATTCA
ATCGTTTACTACTNTGGTATTTACTTTGGTGTTACCATTTTCATTATCATGTTAATGTTT
ATTCGTGCACGTATTCTCAAGTTATTCCTTTTCTTCACTCAAATCATTNTAAGTGGTGCT
GGTCGTGATCGTGTTGCTCGTTGGATTGGTGATGTCATTAAAAAGATTAACTCTCAACCA
GTTGTCTTCTNTGCTTCAAAGGATGATCCAGCCTATTTGAATAAAGCCATCCTTTACATT
CGTGATAATGAACAAACCAATTGGGTTAGAGTCGTACATTGTTGTAATGAAGAAGAATCA
ACCGATTCTTTCTCTTCAACTATGGAATTCTTAGATAAATGTTATCCAAAGATTAGATTA
GATCTCATTCGTGTCAACGCTGAATTCAATGCTTCCACTGTTCAAAAGATCTCTCAAGAA
TTAAAGATGACTTAANCTTTTGTTTCGTATCTTGTATTAAAGACCGTGATGATGGTNATC
CTTCAA
Length of connected seq. 896
Full length Seq ID -
Full length Seq. -
Length of full length seq. -