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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF742
Library CH
(Link to library)
Clone ID CHF742
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHF742P
(Link to Original site)
Representative DNA sequence 
>CHF742 (CHF742Q) /CSM/CH/CHF7-B/CHF742Q.Seq.d/
ATTTTACTAACATTGTTATTAAAATTTAAAATTTTTATATTAGATGATAAGTAATAGTAT
TAATGTAACTCCAAATAAAGAGTCAAAGATGTATGTTGTAAAAAGAGATGGTACAAAAGA
AAATGTATCATTTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATGGAACCAAA
ATTAAATTCAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATT
TCCAGGTGTAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGTC
AACACGTCATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATAA
ACAAACTTCAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAAA
GAGCAATTTATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATGG
TGAGXXXXXXXXXXAATGAATGCTNTGAACCTTACACTTCCAACATTNACAGTNGTCGTG
TTTTAGCAGGTGAATTNNCAATTGTCAACAAACAATTACTAGAAGATCTCATGGAATTGG
GCATTTGGTCANCANAGATGAAGAATCNNATCGTTGTTGCACGTGGTTCCATTCAATCCA
TCGGGTGGCATCCCTGATGATTTGAAAGAACTCTATAGAACAGTTTGGGAAATCCGTCAA
AGAACTNTCATCGATATGGNTGCTGATCGTGGTGCTNTCATCGATCAAAGTCAAAGTTTC
AATGTTTTCATTNCTGAACCAACNTTCGCTAAACTCACCTCAATGCATTTGGTACTCATG
GAAGAAAGGTTTAAAGACCTGGTATGTACTATCTTCGTACTCGTCCTGCCGNCTGATGCA
ATTCAATTCACTGNTGATCCAATNGTATCTCAAACTCCAAAACCAGTTGAAAATAATATA
AACTCAANTACACCACTTAAAACTCCAACTAAAACTCCAAACTCTTCAAATCGTATCT
sequence update 2002.10.25
Translated Amino Acid sequence 
fy*hcy*nlkfly*MISNSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPK
LNSDIVDPIEVAQKVVSGVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHK
QTSKSFVETVKKQYEFINPKSNLLAPLVSKELYEIVMKHGE---

---NECXEPYTSNIXSXRVLAGEXXIVNKQLLEDLMELGIWSXXMKNXIVVARGSIQSIG
WHP**fertl*nslgnpsknxhrygc*swcxhrskskfqcfhx*tnxr*thlnafgthgr
kv*rpgmyylrtrpax*cnsihx*snxisnskts*k*yklxytt*nsn*nsklfksy
Translated Amino Acid sequence (All Frames) 
Frame A:
illtlllkfkifilddk**y*cnsk*rvkdvcckkrwykrkcii**nyiknfifm*ngtk
ikfrys*sn*sstkss*wsisrckdyrig*fgsrdssiyvntssrlwyfgsty*ciess*
tnfkefcrds*eti*ih*skeqfigtigqqgal*nrnetw*---

---NECXEPYTSNIXSXRVLAGEXXIVNKQLLEDLMELGIWSXXMKNXIVVARGSIQSIG
WHP**fertl*nslgnpsknxhrygc*swcxhrskskfqcfhx*tnxr*thlnafgthgr
kv*rpgmyylrtrpax*cnsihx*snxisnskts*k*yklxytt*nsn*nsklfksy

Frame B:
fy*hcy*nlkfly*MISNSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPK
LNSDIVDPIEVAQKVVSGVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHK
QTSKSFVETVKKQYEFINPKSNLLAPLVSKELYEIVMKHGE---

---mnaxnltlptxtvvvf*qvnxqlstnny*kiswnwafgxxr*rixsllhvvpfnpsg
gipddlkelyrtvweirqrtxidmxadrgaxidqsqsfnvfixeptfakltsmhlvlmee
rfkdlvctifvlvlpxdaiqftxdpxvsqtpkpvenninsxtplktptktpnssnri

Frame C:
ftniviki*nfyir**vivlm*lqiksqrcml*kemvqkkmyhliklhqefhfyvkwnqn
*iqi*liqlk*hkk*lveyfqv*rlqnwiiwqprqqhicqhviqimvfwqhvlvyrifin
klqrvl*rqlrnnmnsliqraiywhhwsarssmks**nmv---

---*ml*tlhfqhxqxscfsr*ixncqqtitrrshgighlvxxdeesxrcctwfhsihrv
aslmi*knsieqfgksvkelssiwxlivvlssikvkvsmfsxlnqxslnspqciwyswkk
glktwyvlssysscrlmqfnslxiqxylklqnqlkii*tqxhhlklqlklqtlqivs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF742 (CHF742Q) /CSM/CH/CHF7-B/CHF742Q.Seq.d/                       1852   0.0
VHI338 (VHI338Q) /CSM/VH/VHI3-B/VHI338Q.Seq.d/                        959   0.0
VHC688 (VHC688Q) /CSM/VH/VHC6-D/VHC688Q.Seq.d/                        959   0.0
SHD315 (SHD315Q) /CSM/SH/SHD3-A/SHD315Q.Seq.d/                        959   0.0
SHC647 (SHC647Q) /CSM/SH/SHC6-B/SHC647Q.Seq.d/                        959   0.0
SHB485 (SHB485Q) /CSM/SH/SHB4-D/SHB485Q.Seq.d/                        959   0.0
SHA878 (SHA878Q) /CSM/SH/SHA8-D/SHA878Q.Seq.d/                        959   0.0
CHM350 (CHM350Q) /CSM/CH/CHM3-C/CHM350Q.Seq.d/                        959   0.0
CHK452 (CHK452Q) /CSM/CH/CHK4-C/CHK452Q.Seq.d/                        959   0.0
CHJ284 (CHJ284Q) /CSM/CH/CHJ2-D/CHJ284Q.Seq.d/                        959   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AW332783|AW332783.1 S13A1 AGS-1 Pneumocystis carinii cDNA 3', mRNA sequence.    46   4e-06  4
AW332364|AW332364.1 S7E4 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    46   4e-06  4
AW335099|AW335099.1 S43B7 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    46   6e-06  4
AW334328|AW334328.1 S33D5 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    46   8e-06  4
AW333566|AW333566.1 S23D1 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    38   0.001  4
AC027382|AC027382.2 Homo sapiens chromosome 10 clone RP11-52J14 map 10, WORKING DRAFT SEQUENCE, 27 unordered pieces.    40   0.004  7
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   0.011  12
AC145433|AC145433.2 Pan troglodytes BAC clone RP43-43I4 from 7, complete sequence.    36   0.015  8
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    32   0.028  17
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   0.029  12
dna update 2004. 9.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Q71) RecName: Full=Ribonucleoside-diphosphate reductase larg...   289   1e-76
S34807(S34807) ribonucleoside-diphosphate reductase (EC 1.17.4.1...   165   3e-39
AM270068_2(AM270068|pid:none) Aspergillus niger contig An04c0070...   159   1e-37
AM920437_1772(AM920437|pid:none) Penicillium chrysogenum Wiscons...   159   1e-37
CR382139_247(CR382139|pid:none) Debaryomyces hansenii strain CBS...   155   3e-36
AE016817_343(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...   154   6e-36
WMBY3L(S48413;S12066;B35845;A35930) ribonucleoside-diphosphate r...   148   2e-34
CP000383_446(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340...   144   4e-33
(P21672) RecName: Full=Ribonucleoside-diphosphate reductase larg...   144   4e-33
M58012_1(M58012|pid:none) S.cerevisiae ribonucleotide reductase ...   144   5e-33
protein update 2009. 3.31
PSORT 

 psg: 0.79  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for CHF742 is cyt
5' end seq. ID CHF742F
5' end seq. 
>CHF742F.Seq
ATTTTACTAACATTGTTATTAAAATTTAAAATTTTTATATTAGATGATAAGTAATAGTAT
TAATGTAACTCCAAATAAAGAGTCAAAGATGTATGTTGTAAAAAGAGATGGTACAAAAGA
AAATGTATCATTTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATGGAACCAAA
ATTAAATTCAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATT
TCCAGGTGTAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGTC
AACACGTCATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATAA
ACAAACTTCAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAAA
GAGCAATTTATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATGG
TGAGNNNNNNNNNN
Length of 5' end seq. 494
3' end seq. ID CHF742Z
3' end seq. 
>CHF742Z.Seq
NNNNNNNNNNAATGAATGCTNTGAACCTTACACTTCCAACATTNACAGTNGTCGTGTTTT
AGCAGGTGAATTNNCAATTGTCAACAAACAATTACTAGAAGATCTCATGGAATTGGGCAT
TTGGTCANCANAGATGAAGAATCNNATCGTTGTTGCACGTGGTTCCATTCAATCCATCGG
GTGGCATCCCTGATGATTTGAAAGAACTCTATAGAACAGTTTGGGAAATCCGTCAAAGAA
CTNTCATCGATATGGNTGCTGATCGTGGTGCTNTCATCGATCAAAGTCAAAGTTTCAATG
TTTTCATTNCTGAACCAACNTTCGCTAAACTCACCTCAATGCATTTGGTACTCATGGAAG
AAAGGTTTAAAGACCTGGTATGTACTATCTTCGTACTCGTCCTGCCGNCTGATGCAATTC
AATTCACTGNTGATCCAATNGTATCTCAAACTCCAAAACCAGTTGAAAATAATATAAACT
CAANTACACCACTTAAAACTCCAACTAAAACTCCAAACTCTTCAAATCGTATCT
Length of 3' end seq. 534
Connected seq. ID CHF742P
Connected seq. 
>CHF742P.Seq
ATTTTACTAACATTGTTATTAAAATTTAAAATTTTTATATTAGATGATAAGTAATAGTAT
TAATGTAACTCCAAATAAAGAGTCAAAGATGTATGTTGTAAAAAGAGATGGTACAAAAGA
AAATGTATCATTTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATGGAACCAAA
ATTAAATTCAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATT
TCCAGGTGTAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGTC
AACACGTCATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATAA
ACAAACTTCAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAAA
GAGCAATTTATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATGG
TGAG----------AATGAATGCTNTGAACCTTACACTTCCAACATTNACAGTNGTCGTG
TTTTAGCAGGTGAATTNNCAATTGTCAACAAACAATTACTAGAAGATCTCATGGAATTGG
GCATTTGGTCANCANAGATGAAGAATCNNATCGTTGTTGCACGTGGTTCCATTCAATCCA
TCGGGTGGCATCCCTGATGATTTGAAAGAACTCTATAGAACAGTTTGGGAAATCCGTCAA
AGAACTNTCATCGATATGGNTGCTGATCGTGGTGCTNTCATCGATCAAAGTCAAAGTTTC
AATGTTTTCATTNCTGAACCAACNTTCGCTAAACTCACCTCAATGCATTTGGTACTCATG
GAAGAAAGGTTTAAAGACCTGGTATGTACTATCTTCGTACTCGTCCTGCCGNCTGATGCA
ATTCAATTCACTGNTGATCCAATNGTATCTCAAACTCCAAAACCAGTTGAAAATAATATA
AACTCAANTACACCACTTAAAACTCCAACTAAAACTCCAAACTCTTCAAATCGTATCT
Length of connected seq. 1008
Full length Seq ID -
Full length Seq. -
Length of full length seq. -