>CHF735 (CHF735Q) /CSM/CH/CHF7-B/CHF735Q.Seq.d/
ATCAATTATAATTATATTTTAATAAAAATAATAAAAATATAGTAAAATAAAAATGAATAT
CATAAAGACTGGAATTAAACAATCTCTTGTATCGGGTATTTATAGTAAAGTTGGAATTAG
AGCATTTTGTACCCATTATTCAGCAGAATTAGAATGGGTTAAATTATCAGATGACAATAA
GGTTGCAACTGTTGGGTTATCTTCTTTTGGTGCTCAAAGATTGGGAAAAATTAACTATGT
AGAGCTACCAAAAGAACATAGAAAATGTAGAAGAGAAGAAAAGTTTGGAGTACTAGAAAG
TTCTAATGCAACTGCTTTCGGTTTGTATGCCCCAGTTTCTGGTGAAGTTTTAGAAGTAAA
TGAAAAATTGAAAAAATCACCATCCTTGTTAAATGAAGACCCAGCAAATAATTGGATGGT
TAAATTTAAGGTTTCTAAGCCTGATGAATTTAAAAAATTAATGGATTCAAATAAATATAA
AAAATTTGTGCAATGGTATAGATAAAGTGAGTTGTGAAAXXXXXXXXXXAAAAAAAANTT
ATTTTTTTTNAAAAAAAAAAATTNTTNAAAAAAAAAAAAAGATAATTAATATTTTTTAGA
AAAAATAAATATATAAAATAAATAAAAAATAACTAAATAAAAAAATAAAAAAATAAAAAA
ATAAATAAAAAAATAAATA

ql*lyfnknnknivk*k*is*rlelnnllyrvfivklelehfvpiiqqn*nglnyqmtir
lqllgylllvlkdwekltm*syqknienveekksley*kvlmqllsvcmpqflvkf*k*m
kn*knhhpc*mktqqiigwlnlrflslmnlkn*WIQINIKNLCNGIDKVSCE---

---KKXYFFXKKKIXXKKKKIINIF*kk*iykinkk*lnkkikk*knk*knk

Frame A:
inynyilikiiki**nkneyhkdwn*tiscigyl**swn*silyplfsrirmg*iir*q*
gcncwviffwcskigkn*lcratkrt*km*krrkvwstrkf*cncfrfvcpsfw*sfrsk
*kiekitilvk*rpsk*ldg*i*gf*a**i*kingfk*i*kicamv*ik*vvk---

---kkxlffxkkknxxkkkkdn*yflekini*nk*kitk*knkkikk*ikk*i

Frame B:
siiiif**k**kyskikmniiktgikqslvsgiyskvgirafcthysaelewvklsddnk
vatvglssfgaqrlgkinyvelpkehrkcrreekfgvlessnatafglyapvsgevlevn
eklkkspsllnedpannwmvkfkvskpdefkklmdsnkykkfvqwyr*sel*---

---KKXYFFXKKKIXXKKKKIINIF*kk*iykinkk*lnkkikk*knk*knk

Frame C:
ql*lyfnknnknivk*k*is*rlelnnllyrvfivklelehfvpiiqqn*nglnyqmtir
lqllgylllvlkdwekltm*syqknienveekksley*kvlmqllsvcmpqflvkf*k*m
kn*knhhpc*mktqqiigwlnlrflslmnlkn*WIQINIKNLCNGIDKVSCE---

---kkxiffxkkkxxkkkkr*liffrknkyik*iknn*ikk*knkkinkkin

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF735 (CHF735Q) /CSM/CH/CHF7-B/CHF735Q.Seq.d/                        922   0.0
SSD590 (SSD590Q) /CSM/SS/SSD5-D/SSD590Q.Seq.d/                        381   e-104
AFE552 (AFE552Q) /CSM/AF/AFE5-C/AFE552Q.Seq.d/                         40   0.043
VSF586 (VSF586Q) /CSM/VS/VSF5-D/VSF586Q.Seq.d/                         38   0.17
VFN377 (VFN377Q) /CSM/VF/VFN3-D/VFN377Q.Seq.d/                         38   0.17
SSF141 (SSF141Q) /CSM/SS/SSF1-B/SSF141Q.Seq.d/                         38   0.17
SLC789 (SLC789Q) /CSM/SL/SLC7-D/SLC789Q.Seq.d/                         38   0.17
SFH389 (SFH389Q) /CSM/SF/SFH3-D/SFH389Q.Seq.d/                         38   0.17
VSH667 (VSH667Q) /CSM/VS/VSH6-C/VSH667Q.Seq.d/                         36   0.67
VSD558 (VSD558Q) /CSM/VS/VSD5-C/VSD558Q.Seq.d/                         36   0.67

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116920|AC116920.3 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    34   9e-04  9
AL110479|AL110479.1 Caenorhabditis elegans YAC Y105C5B.            36   0.003  12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   0.007  14
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34   0.009  10
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    34   0.019  10
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    36   0.024  12
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         36   0.025  13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           34   0.025  17
AE017261|AE017261.1 Picrophilus torridus DSM 9790, complete genome.    36   0.037  14
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence.    34   0.060  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FI0) RecName: Full=Glycine cleavage system H-like protein gc...   305   1e-81
BX842647_282(BX842647|pid:none) Bdellovibrio bacteriovorus compl...    99   8e-20
(P25855) RecName: Full=Glycine cleavage system H protein 1, mito...    97   3e-19
CP000855_1341(CP000855|pid:none) Thermococcus onnurineus NA1, co...    97   4e-19
AC147481_14(AC147481|pid:none) Medicago truncatula chromosome 2 ...    97   5e-19
AP006840_1921(AP006840|pid:none) Symbiobacterium thermophilum IA...    96   9e-19
CP001275_725(CP001275|pid:none) Thermomicrobium roseum DSM 5159,...    96   9e-19
GM015893_32(GM015893|pid:none) Sequence 723 from Patent EP1923464.     96   1e-18
CP001251_1449(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,...    95   2e-18
(Q9LQL0) RecName: Full=Probable glycine cleavage system H protei...    95   2e-18

 psg: 0.56  gvh: 0.31  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.25  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHF735 is nuc

>CHF735F.Seq
ATCAATTATAATTATATTTTAATAAAAATAATAAAAATATAGTAAAATAAAAATGAATAT
CATAAAGACTGGAATTAAACAATCTCTTGTATCGGGTATTTATAGTAAAGTTGGAATTAG
AGCATTTTGTACCCATTATTCAGCAGAATTAGAATGGGTTAAATTATCAGATGACAATAA
GGTTGCAACTGTTGGGTTATCTTCTTTTGGTGCTCAAAGATTGGGAAAAATTAACTATGT
AGAGCTACCAAAAGAACATAGAAAATGTAGAAGAGAAGAAAAGTTTGGAGTACTAGAAAG
TTCTAATGCAACTGCTTTCGGTTTGTATGCCCCAGTTTCTGGTGAAGTTTTAGAAGTAAA
TGAAAAATTGAAAAAATCACCATCCTTGTTAAATGAAGACCCAGCAAATAATTGGATGGT
TAAATTTAAGGTTTCTAAGCCTGATGAATTTAAAAAATTAATGGATTCAAATAAATATAA
AAAATTTGTGCAATGGTATAGATAAAGTGAGTTGTGAAANNNNNNNNNN

>CHF735Z.Seq
NNNNNNNNNNAAAAAAAANTTATTTTTTTTNAAAAAAAAAAATTNTTNAAAAAAAAAAAA
AGATAATTAATATTTTTTAGAAAAAATAAATATATAAAATAAATAAAAAATAACTAAATA
AAAAAATAAAAAAATAAAAAAATAAATAAAAAAATAAATA

>CHF735P.Seq
ATCAATTATAATTATATTTTAATAAAAATAATAAAAATATAGTAAAATAAAAATGAATAT
CATAAAGACTGGAATTAAACAATCTCTTGTATCGGGTATTTATAGTAAAGTTGGAATTAG
AGCATTTTGTACCCATTATTCAGCAGAATTAGAATGGGTTAAATTATCAGATGACAATAA
GGTTGCAACTGTTGGGTTATCTTCTTTTGGTGCTCAAAGATTGGGAAAAATTAACTATGT
AGAGCTACCAAAAGAACATAGAAAATGTAGAAGAGAAGAAAAGTTTGGAGTACTAGAAAG
TTCTAATGCAACTGCTTTCGGTTTGTATGCCCCAGTTTCTGGTGAAGTTTTAGAAGTAAA
TGAAAAATTGAAAAAATCACCATCCTTGTTAAATGAAGACCCAGCAAATAATTGGATGGT
TAAATTTAAGGTTTCTAAGCCTGATGAATTTAAAAAATTAATGGATTCAAATAAATATAA
AAAATTTGTGCAATGGTATAGATAAAGTGAGTTGTGAAA----------AAAAAAAANTT
ATTTTTTTTNAAAAAAAAAAATTNTTNAAAAAAAAAAAAAGATAATTAATATTTTTTAGA
AAAAATAAATATATAAAATAAATAAAAAATAACTAAATAAAAAAATAAAAAAATAAAAAA
ATAAATAAAAAAATAAATA