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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFF743
Library AF
(Link to library)
Clone ID AFF743
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1
Original site URL
Representative seq. ID AFF743Z
(Link to Original site)
Representative DNA sequence 
>AFF743 (AFF743Q) /CSM/AF/AFF7-B/AFF743Q.Seq.d/
XXXXXXXXXXTGCTCCACCACCACCACCACCTCCACCACCACCTTNTAGTGGTCCACCAC
CTCCACCACCACCAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCG
GTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATA
AAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTG
ATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAG
ATGATGATGACGATGATGAATGGTCAGATTATTAAATTATTNCTTTAACAAAATCAAATN
CAAAAAAAT
sequence update 2001. 6. 2
Translated Amino Acid sequence 
---APPPPPPPPPPXSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASLKAVDK
TNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDDDEWSDY*iixltksnx
kk
Translated Amino Acid sequence (All Frames) 
Frame A:
---APPPPPPPPPPXSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASLKAVDK
TNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDDDEWSDY*iixltksnx
kk


Frame B:
---lhhhhhlhhhlxvvhhlhhhqwpvllhhqevvvpaaveemifwlpfvvvqvlrllik
pihsqifkvlvmkvhvl*lil*lqlwlivevv*ekmmkkmmmtmmngqiiklxl*qnqxq
kn


Frame C:
---stttttstttx*wsttstttngqcssiirrwwcqrrwkk*sfgfhs*wcks*gc**n
qstprysksw**rftffs*yfscsyg*s*rwyerr**rr***r**mvrllnyxfnkikxk
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/                        402   e-111
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/                        402   e-111
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/                        402   e-111
SSG705 (SSG705Q) /CSM/SS/SSG7-A/SSG705Q.Seq.d/                        402   e-111
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/                        402   e-111
SLH135 (SLH135Q) /CSM/SL/SLH1-B/SLH135Q.Seq.d/                        402   e-111
SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/                        402   e-111
SFK712 (SFK712Q) /CSM/SF/SFK7-A/SFK712Q.Seq.d/                        402   e-111
SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/                        402   e-111
SFF823 (SFF823Q) /CSM/SF/SFF8-A/SFF823Q.Seq.d/                        402   e-111
own update 2002. 9.16
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF305060|AF305060.1 Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds.   402   e-112  2
BQ258443|BQ258443.1 fz79g06.y1 Sugano SJD adult male Danio rerio cDNA clone 5914930 5' similar to SW:ROA1_HUMAN P09651 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 ;, mRNA sequence.    50   0.023  1
AY088091|AY088091.1 Arabidopsis thaliana clone 41181 mRNA, complete sequence.    46   0.35   1
AL137082|AL137082.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F14P22.    46   0.35   1
X75304|X75304.1 H.sapiens giantin mRNA.                            44   1.2    2
AC024907|AC024907.29 Homo sapiens chromosome 3 clone RP11-911E23, WORKING DRAFT SEQUENCE, 42 unordered pieces.    44   1.4    1
CK286950|CK286950.1 EST749672 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMB572 3' end, mRNA sequence.    44   1.4    1
BM472104|BM472104.1 AGENCOURT_6465327 NIH_MGC_72 Homo sapiens cDNA clone IMAGE:5539379 5', mRNA sequence.    44   1.4    1
BQ948820|BQ948820.1 AGENCOURT_8876490 NIH_MGC_101 Homo sapiens cDNA clone IMAGE:6464098 5', mRNA sequence.    44   1.4    1
U18348|U18348.1 Phaseolus vulgaris phaseolin G-box binding protein PG1 (PG1) mRNA, complete cds.    44   1.4    1
dna update 2004. 4.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A...    83   3e-15
AC117076_18(AC117076|pid:none) Dictyostelium discoideum chromoso...    39   0.041
DQ985464_1(DQ985464|pid:none) Suberites domuncula Wiskott-Aldric...    32   6.5
protein update 2008.11.20
PSORT 

 psg: 0.84  gvh: 0.43  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for AFF743 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFF743Z
3' end seq. 
>AFF743Z.Seq
----------TGCTCCACCACCACCACCACCTCCACCACCACCTTNTAGTGGTCCACCAC
CTCCACCACCACCAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCG
GTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATA
AAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTG
ATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAG
ATGATGATGACGATGATGAATGGTCAGATTATTAAATTATTNCTTTAACAAAATCAAATN
CAAAAAAAT
Length of 3' end seq. 359
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -