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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF675
Library CH
(Link to library)
Clone ID CHF675
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12649-1|Contig-U16394-1
Original site URL
Representative seq. ID CHF675P
(Link to Original site)
Representative DNA sequence 
>CHF675 (CHF675Q) /CSM/CH/CHF6-D/CHF675Q.Seq.d/
AGCAATAATAATTATAATAATAATAAATAATAATAATAATAATAACAATAAAATAGTAAC
ACCAATAAATAATAATATTAATAATAATAATAATAATAATAATAATAATAATAAAATAAA
AAATATAATAATAATAATAGTAATAATAGTAATAATAATAATAAAATAATAATAATAGAA
ATAATTTCAATTTAAAAAATAAATAAAATAAAANNAGGAAAAAATAAAAAAAAAAATAAA
TTTTTTTTTTTAAAAAATTAAAATTTTAAAAAAAAAAXXXXXXXXXXATGCAAAGTTTCA
GATTTTGGTCTTAGTCGTTTTAATACCGCCGATAATTTAGAAACACTCAGTAAGATTCGT
GGTACCTTTGCCTATTGTTCACCTGAAGTCGCCGTAGGTAATGGTAGTCTCTACACTACC
AAATCTGATATCTACAGTATTGGTATCGTCTTTTGGGAATTAGTAACTCGTGTTATCAAT
GGTGAATACTCTCGTCCCTACAGTGAATATTCTCACATCAAAATGGACTTTCAAATCATG
TTAA
sequence update 2002.10.25
Translated Amino Acid sequence 
aiiiiiiinnnnnnnnkivtpinnninnnnnnnnnnnkikniiiiiviiviiiik****k
*fqfkk*ik*xxekikkkinfff*KIKILKKK---

---CKVSDFGLSRFNTADNLETLSKIRGTFAYCSPEVAVGNGSLYTTKSDIYSIGIVFWE
LVTRVINGEYSRPYSEYSHIKMDFQIML
Translated Amino Acid sequence (All Frames) 
Frame A:
snnnynnnk******q*nsntnk**y************nkkynnnnsnnsnnnnkiiiie
iisi*kinkikxgknkkknkffflkn*nfkkk---

---mqsfrfws*sf*yrr*frntq*dswylcllft*srrr*w*slhyqi*ylqywyrllg
isnscyqw*ilsslq*ifshqnglsnhv

Frame B:
aiiiiiiinnnnnnnnkivtpinnninnnnnnnnnnnkikniiiiiviiviiiik****k
*fqfkk*ik*xxekikkkinfff*KIKILKKK---

---CKVSDFGLSRFNTADNLETLSKIRGTFAYCSPEVAVGNGSLYTTKSDIYSIGIVFWE
LVTRVINGEYSRPYSEYSHIKMDFQIML

Frame C:
q**l****iiiiiitik**hq*iiiliiiiiiiiiiik*ki*************nnnnrn
nfnlknk*nkxrkk*kkk*ifffkklkf*kk---

---akfqilvlvvlippii*khsvrfvvplpivhlksp*vmvvstlpnlistvlvssfgn
**lvlsmvntlvptvniltskwtfksc*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK887 (SHK887Q) /CSM/SH/SHK8-D/SHK887Q.Seq.d/                        509   e-143
SHF208 (SHF208Q) /CSM/SH/SHF2-A/SHF208Q.Seq.d/                        509   e-143
SHE857 (SHE857Q) /CSM/SH/SHE8-C/SHE857Q.Seq.d/                        509   e-143
SHD120 (SHD120Q) /CSM/SH/SHD1-A/SHD120Q.Seq.d/                        509   e-143
CHS225 (CHS225Q) /CSM/CH/CHS2-B/CHS225Q.Seq.d/                        509   e-143
CHP295 (CHP295Q) /CSM/CH/CHP2-D/CHP295Q.Seq.d/                        509   e-143
CHF675 (CHF675Q) /CSM/CH/CHF6-D/CHF675Q.Seq.d/                        509   e-143
AHF423 (AHF423Q) /CSM/AH/AHF4-A/AHF423Q.Seq.d/                        509   e-143
AHC678 (AHC678Q) /CSM/AH/AHC6-D/AHC678Q.Seq.d/                        509   e-143
SHB434 (SHB434Q) /CSM/SH/SHB4-B/SHB434Q.Seq.d/                        484   e-136
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC148177|AC148177.13 Medicago truncatula clone mth2-4c9, complete sequence.    48   0.15   1
BG453581|BG453581.1 NF092A07LF1F1050 Developing leaf Medicago truncatula cDNA clone NF092A07LF 5', mRNA sequence.    48   0.15   1
BM813350|BM813350.1 EST591443 BNIR Medicago truncatula/Meloidogyne incognita mixed EST library cDNA clone pBNIR-8H12, mRNA sequence.    48   0.15   1
AC139746|AC139746.15 Medicago truncatula clone mth2-17b20, complete sequence.    48   0.15   1
BG645865|BG645865.1 EST507484 KV3 Medicago truncatula cDNA clone pKV3-47F12 5' end, mRNA sequence.    48   0.15   1
AI974331|AI974331.1 T110180e KV0 Medicago truncatula cDNA clone pKV0-1I16, mRNA sequence.    48   0.15   1
BG453480|BG453480.1 NF092C08LF1F1055 Developing leaf Medicago truncatula cDNA clone NF092C08LF 5', mRNA sequence.    48   0.15   1
BF646211|BF646211.1 NF067F06EC1F1058 Elicited cell culture Medicago truncatula cDNA clone NF067F06EC 5', mRNA sequence.    48   0.15   1
BQ164795|BQ164795.1 EST610664 KVKC Medicago truncatula cDNA clone pKVKC-1E8, mRNA sequence.    48   0.15   1
BF631769|BF631769.1 NF026A05DT1F1034 Drought Medicago truncatula cDNA clone NF026A05DT 5', mRNA sequence.    48   0.15   1
dna update 2004.10. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XX5) RecName: Full=Probable serine/threonine-protein kinase ...   176   4e-43
(Q55GG4) RecName: Full=Probable serine/threonine-protein kinase ...    96   7e-19
(Q54HC6) RecName: Full=Ankyrin repeat-containing protein kinase ...    91   2e-17
(Q54RR9) RecName: Full=Probable serine/threonine-protein kinase ...    86   6e-16
(Q54G28) RecName: Full=Probable tyrosine-protein kinase DDB_G029...    82   1e-14
(Q86HG9) RecName: Full=Probable serine/threonine-protein kinase ...    75   1e-12
(Q54R98) RecName: Full=Probable serine/threonine-protein kinase ...    67   3e-10
FB781369_1(FB781369|pid:none) Sequence 642 from Patent WO2008034...    58   1e-07
AY085517_1(AY085517|pid:none) Arabidopsis thaliana clone 15535 m...    58   2e-07
AY687390_1(AY687390|pid:none) Glycine max putative receptor-like...    57   3e-07
protein update 2009. 3.31
PSORT 

 psg: 0.65  gvh: 0.42  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CHF675 is cyt
5' end seq. ID CHF675F
5' end seq. 
>CHF675F.Seq
AGCAATAATAATTATAATAATAATAAATAATAATAATAATAATAACAATAAAATAGTAAC
ACCAATAAATAATAATATTAATAATAATAATAATAATAATAATAATAATAATAAAATAAA
AAATATAATAATAATAATAGTAATAATAGTAATAATAATAATAAAATAATAATAATAGAA
ATAATTTCAATTTAAAAAATAAATAAAATAAAANNAGGAAAAAATAAAAAAAAAAATAAA
TTTTTTTTTTTAAAAAATTAAAATTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 287
3' end seq. ID CHF675Z
3' end seq. 
>CHF675Z.Seq
NNNNNNNNNNATGCAAAGTTTCAGATTTTGGTCTTAGTCGTTTTAATACCGCCGATAATT
TAGAAACACTCAGTAAGATTCGTGGTACCTTTGCCTATTGTTCACCTGAAGTCGCCGTAG
GTAATGGTAGTCTCTACACTACCAAATCTGATATCTACAGTATTGGTATCGTCTTTTGGG
AATTAGTAACTCGTGTTATCAATGGTGAATACTCTCGTCCCTACAGTGAATATTCTCACA
TCAAAATGGACTTTCAAATCATGTTAA
Length of 3' end seq. 267
Connected seq. ID CHF675P
Connected seq. 
>CHF675P.Seq
AGCAATAATAATTATAATAATAATAAATAATAATAATAATAATAACAATAAAATAGTAAC
ACCAATAAATAATAATATTAATAATAATAATAATAATAATAATAATAATAATAAAATAAA
AAATATAATAATAATAATAGTAATAATAGTAATAATAATAATAAAATAATAATAATAGAA
ATAATTTCAATTTAAAAAATAAATAAAATAAAANNAGGAAAAAATAAAAAAAAAAATAAA
TTTTTTTTTTTAAAAAATTAAAATTTTAAAAAAAAAA----------ATGCAAAGTTTCA
GATTTTGGTCTTAGTCGTTTTAATACCGCCGATAATTTAGAAACACTCAGTAAGATTCGT
GGTACCTTTGCCTATTGTTCACCTGAAGTCGCCGTAGGTAATGGTAGTCTCTACACTACC
AAATCTGATATCTACAGTATTGGTATCGTCTTTTGGGAATTAGTAACTCGTGTTATCAAT
GGTGAATACTCTCGTCCCTACAGTGAATATTCTCACATCAAAATGGACTTTCAAATCATG
TTAA
Length of connected seq. 534
Full length Seq ID -
Full length Seq. -
Length of full length seq. -