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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF651
Library CH
(Link to library)
Clone ID CHF651
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10739-1|Contig-U12974-1
Original site URL
Representative seq. ID CHF651P
(Link to Original site)
Representative DNA sequence 
>CHF651 (CHF651Q) /CSM/CH/CHF6-C/CHF651Q.Seq.d/
ATACACATTTCAACCTACATTGAAGAATCTCTTGTGAATAAAAAAAAACTAAATAAAAAA
AAAAAAAAAAAAANTTANTAANTAAAAAANTAAANTAAAAAAAAAAXXXXXXXXXXAAAG
AAAAAAGGAGGTAGTAAAAAACATCAAGAAGAATCAGATGATGAAAGTTTNTCAGAGGTA
GAGGAAGAGGATTTAGATAATTTGAAATTGGTTTTATTATCAGGTTTTAATGATAGTGAA
CGTAGTTCAATTATAGAGTCGATGGGAGTAATTGGGTTAACCGTTTCAGATGATCCTAAA
GAATGTACTCATGTCATTATGAATGATTCAAAGAATAGAACACTTAAATTCCTTTTGGGT
GTTTCAAAAGGAGTTTGGGTCTTAAAACGTTCTTGGTTAGAGGAATCCTTTAAACAACAA
CAAATCATTGACAACGAAGAAGATCACGAAGTTGATGAACATCCAGGTCCAAACATGGCT
CGTTTATCACAACAGAATGGTGATGAACCTTTATTCTCTGGTAAAACATTCTTTTTGGCC
GGTAAAGCTGATCCAAGTGGTATTAATAGAAAATCAAAAGAAGAATTAATTAGAAATTTA
GGTGGTAAAATTTGTAAATCAATTGAATTGGCTTCAATTTGTAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ytfqptlknll*ikkn*ikkkkkkxxx*KXKXKKK---

---KKKGGSKKHQEESDDESXSEVEEEDLDNLKLVLLSGFNDSERSSIIESMGVIGLTVS
DDPKECTHVIMNDSKNRTLKFLLGVSKGVWVLKRSWLEESFKQQQIIDNEEDHEVDEHPG
PNMARLSQQNGDEPLFSGKTFFLAGKADPSGINRKSKEELIRNLGGKICKSIELASIC
Translated Amino Acid sequence (All Frames) 
Frame A:
ihistyieeslvnkkklnkkkkkkxx*xkx*xkkk---

---kekrr**ktsrrir**kfxrgrgrgfr*feigfiirf****t*fnyrvdgsnwvnrf
r*s*rmyschye*fke*nt*ipfgcfkrslglktflvrgil*tttnh*qrrrsrs**tsr
skhgsfittew**tfilw*nilfgr*s*skwy**kikrrin*kfrw*nl*in*igfnl*

Frame B:
ytfqptlknll*ikkn*ikkkkkkxxx*KXKXKKK---

---KKKGGSKKHQEESDDESXSEVEEEDLDNLKLVLLSGFNDSERSSIIESMGVIGLTVS
DDPKECTHVIMNDSKNRTLKFLLGVSKGVWVLKRSWLEESFKQQQIIDNEEDHEVDEHPG
PNMARLSQQNGDEPLFSGKTFFLAGKADPSGINRKSKEELIRNLGGKICKSIELASIC

Frame C:
thfnlh*risce*kktk*kkkkkxlxxkkxx*kk---

---rkkevvknikknqmmkvxqr*rkri*ii*nwfyyqvlmivnvvql*srwe*lg*pfq
milknvlmsl*miqriehlnsfwvfqkefgs*nvlg*rnplnnnkslttkkitklmniqv
qtwlvyhnrmvmnlyslvkhsfwpvkliqvvlienqkkn*lei*vvkfvnqlnwlqfv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF651 (CHF651Q) /CSM/CH/CHF6-C/CHF651Q.Seq.d/                       1041   0.0
VHM638 (VHM638Q) /CSM/VH/VHM6-B/VHM638Q.Seq.d/                       1039   0.0
AHO888 (AHO888Q) /CSM/AH/AHO8-D/AHO888Q.Seq.d/                       1039   0.0
CHO325 (CHO325Q) /CSM/CH/CHO3-B/CHO325Q.Seq.d/                       1031   0.0
AFI815 (AFI815Q) /CSM/AF/AFI8-A/AFI815Q.Seq.d/                        983   0.0
CHI343 (CHI343Q) /CSM/CH/CHI3-B/CHI343Q.Seq.d/                         78   2e-13
AFB641 (AFB641Q) /CSM/AF/AFB6-B/AFB641Q.Seq.d/                         78   2e-13
AHO589 (AHO589Q) /CSM/AH/AHO5-D/AHO589Q.Seq.d/                         74   3e-12
SSM739 (SSM739Q) /CSM/SS/SSM7-B/SSM739Q.Seq.d/                         42   0.010
VHP434 (VHP434Q) /CSM/VH/VHP4-B/VHP434Q.Seq.d/                         38   0.16
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.  1039   0.0    5
AC119383|AC119383.4 Rattus norvegicus clone CH230-221N23, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38   0.008  5
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.008  11
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    32   0.040  14
AC133741|AC133741.2 Rattus norvegicus clone CH230-282E19, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.    38   0.070  4
AE017274|AE017274.1 Bacillus cereus ATCC 10987, section 11 of 18 of the complete genome.    40   0.12   5
AC109546|AC109546.4 Rattus norvegicus clone CH230-228P2, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38   0.12   5
AC096231|AC096231.8 Rattus norvegicus clone CH230-33C23, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   0.12   6
AC105790|AC105790.3 Rattus norvegicus clone CH230-252D23, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    38   0.14   7
AC132750|AC132750.5 Rattus norvegicus clone CH230-2N1, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38   0.16   3
dna update 2004.10. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC115116_1(BC115116|pid:none) Danio rerio zgc:136403, mRNA (cDNA...    65   1e-09
(Q90WJ3) RecName: Full=PAX-interacting protein 1; AltName: Full=...    61   2e-08
BC077588_1(BC077588|pid:none) Xenopus laevis Swift, mRNA (cDNA c...    61   3e-08
EU957485_1(EU957485|pid:none) Zea mays clone 1594336 ATBRCA1 mRN...    60   5e-08
AK103203_1(AK103203|pid:none) Oryza sativa Japonica Group cDNA c...    59   1e-07
AF104261_1(AF104261|pid:none) Mus musculus Pax transcription act...    58   2e-07
DQ788861_1(DQ788861|pid:none) Gallus gallus microcephalin (MCPH1...    57   4e-07
(Q6ZW49) RecName: Full=PAX-interacting protein 1; AltName: Full=...    56   7e-07
BX538201_1(BX538201|pid:none) Homo sapiens mRNA; cDNA DKFZp686O1...    56   7e-07
BC033781_1(BC033781|pid:none) Homo sapiens PAX interacting (with...    56   7e-07
protein update 2009. 3.31
PSORT 

 psg: 0.44  gvh: 0.50  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for CHF651 is nuc
5' end seq. ID CHF651F
5' end seq. 
>CHF651F.Seq
ATACACATTTCAACCTACATTGAAGAATCTCTTGTGAATAAAAAAAAACTAAATAAAAAA
AAAAAAAAAAAAANTTANTAANTAAAAAANTAAANTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 116
3' end seq. ID CHF651Z
3' end seq. 
>CHF651Z.Seq
NNNNNNNNNNAAAGAAAAAAGGAGGTAGTAAAAAACATCAAGAAGAATCAGATGATGAAA
GTTTNTCAGAGGTAGAGGAAGAGGATTTAGATAATTTGAAATTGGTTTTATTATCAGGTT
TTAATGATAGTGAACGTAGTTCAATTATAGAGTCGATGGGAGTAATTGGGTTAACCGTTT
CAGATGATCCTAAAGAATGTACTCATGTCATTATGAATGATTCAAAGAATAGAACACTTA
AATTCCTTTTGGGTGTTTCAAAAGGAGTTTGGGTCTTAAAACGTTCTTGGTTAGAGGAAT
CCTTTAAACAACAACAAATCATTGACAACGAAGAAGATCACGAAGTTGATGAACATCCAG
GTCCAAACATGGCTCGTTTATCACAACAGAATGGTGATGAACCTTTATTCTCTGGTAAAA
CATTCTTTTTGGCCGGTAAAGCTGATCCAAGTGGTATTAATAGAAAATCAAAAGAAGAAT
TAATTAGAAATTTAGGTGGTAAAATTTGTAAATCAATTGAATTGGCTTCAATTTGTAA
Length of 3' end seq. 538
Connected seq. ID CHF651P
Connected seq. 
>CHF651P.Seq
ATACACATTTCAACCTACATTGAAGAATCTCTTGTGAATAAAAAAAAACTAAATAAAAAA
AAAAAAAAAAAAANTTANTAANTAAAAAANTAAANTAAAAAAAAAA----------AAAG
AAAAAAGGAGGTAGTAAAAAACATCAAGAAGAATCAGATGATGAAAGTTTNTCAGAGGTA
GAGGAAGAGGATTTAGATAATTTGAAATTGGTTTTATTATCAGGTTTTAATGATAGTGAA
CGTAGTTCAATTATAGAGTCGATGGGAGTAATTGGGTTAACCGTTTCAGATGATCCTAAA
GAATGTACTCATGTCATTATGAATGATTCAAAGAATAGAACACTTAAATTCCTTTTGGGT
GTTTCAAAAGGAGTTTGGGTCTTAAAACGTTCTTGGTTAGAGGAATCCTTTAAACAACAA
CAAATCATTGACAACGAAGAAGATCACGAAGTTGATGAACATCCAGGTCCAAACATGGCT
CGTTTATCACAACAGAATGGTGATGAACCTTTATTCTCTGGTAAAACATTCTTTTTGGCC
GGTAAAGCTGATCCAAGTGGTATTAATAGAAAATCAAAAGAAGAATTAATTAGAAATTTA
GGTGGTAAAATTTGTAAATCAATTGAATTGGCTTCAATTTGTAA
Length of connected seq. 634
Full length Seq ID -
Full length Seq. -
Length of full length seq. -