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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF631
Library CH
(Link to library)
Clone ID CHF631
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16433-1
Original site URL
Representative seq. ID CHF631P
(Link to Original site)
Representative DNA sequence 
>CHF631 (CHF631Q) /CSM/CH/CHF6-B/CHF631Q.Seq.d/
ATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTT
ATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTAT
AAATAAAAAAAAAAXXXXXXXXXXGTTAAACCAGCCCCATCCGCTGAACACTCTTATGCT
GAAGGTGAAGGTTTAGTCAAAGTATTTGATAATGCCCCAGCTGAATTCACTATTTTCGCC
GTTGACACTAAAGATGTTGCTCGTACCGATGGTGGTGATCCATTTGAAGTCGCTATCAAT
GGTCCAGATGGTTTAGTCGTTGATGCCAAAGTTACCGATAACAATGACGGTACTTATGGT
GTTGTCTATGATGCCCCAGTTGAAGGTAACTACAATGTTAATGTCACCCTCCGTGGTAAT
CCAATCAAAAATATGCCAATCGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCA
TCATTCGGTTCATTCACTTTTACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACC
TATGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCTGAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
syhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIYSCINKKK---

---VKPAPSAEHSYAEGEGLVKVFDNAPAEFTIFAVDTKDVARTDGGDPFEVAINGPDGL
VVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSF
TFTVAAKNKKGEVKTYGGDKFEVSITGPAE
Translated Amino Acid sequence (All Frames) 
Frame A:
ilpflfiyllnyylfikllfielcklpsnkf*yfvyiflyk*kk---

---VKPAPSAEHSYAEGEGLVKVFDNAPAEFTIFAVDTKDVARTDGGDPFEVAINGPDGL
VVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSF
TFTVAAKNKKGEVKTYGGDKFEVSITGPAE

Frame B:
syhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIYSCINKKK---

---lnqphplntlmlkvkv*skylimpqlnslfspltlkmllvpmvvihlkslsmvqmv*
slmpklpitmtvlmvlsmmpqlkvttmlmspsvviqskicqsmsnalkvpmvkihhsvhs
llpsllkirkvklkpmvvinlkslslvqlk

Frame C:
ltifiylfikllfiy*iiiy*vv*ttfq*ilifciyilv*ikkk---

---*tspir*tllc*r*rfsqsi**cps*ihyfrr*h*rccsyrww*si*sryqwsrwfs
r*cqsyr*q*rylwccl*cps*r*lqc*chppw*snqkyanrcqmh*rcqw*rfiirfih
fyrrc*k*er*s*nlww**i*slyhwss*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF631 (CHF631Q) /CSM/CH/CHF6-B/CHF631Q.Seq.d/                        876   0.0
VHQ357 (VHQ357Q) /CSM/VH/VHQ3-C/VHQ357Q.Seq.d/                        868   0.0
VHQ144 (VHQ144Q) /CSM/VH/VHQ1-B/VHQ144Q.Seq.d/                        868   0.0
VHP113 (VHP113Q) /CSM/VH/VHP1-A/VHP113Q.Seq.d/                        868   0.0
VHO119 (VHO119Q) /CSM/VH/VHO1-A/VHO119Q.Seq.d/                        868   0.0
VHN879 (VHN879Q) /CSM/VH/VHN8-D/VHN879Q.Seq.d/                        868   0.0
VHN315 (VHN315Q) /CSM/VH/VHN3-A/VHN315Q.Seq.d/                        868   0.0
VHM484 (VHM484Q) /CSM/VH/VHM4-D/VHM484Q.Seq.d/                        868   0.0
VHL789 (VHL789Q) /CSM/VH/VHL7-D/VHL789Q.Seq.d/                        868   0.0
VHK747 (VHK747Q) /CSM/VH/VHK7-B/VHK747Q.Seq.d/                        868   0.0
own update 2003.10. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X15430|X15430.1 Dictyostelium discoideum mRNA for gelation factor.   868   0.0    3
AL356308|AL356308.16 Human DNA sequence from clone RP11-475L16 on chromosome 10.    48   0.16   1
AQ543434|AQ543434.1 RPCI-11-349G2.TV RPCI-11 Homo sapiens genomic clone RPCI-11-349G2, genomic survey sequence.    48   0.16   1
AC079798|AC079798.2 Homo sapiens chromosome 4 clone RP11-661K10, WORKING DRAFT SEQUENCE, 14 unordered pieces.    40   0.22   4
CC917029|CC917029.1 t097n16ba.f1 TAMBT Bos taurus genomic clone t097n16ba, genomic survey sequence.    38   1.2    2
AC123148|AC123148.5 Rattus norvegicus clone CH230-43D20, WORKING DRAFT SEQUENCE, 2 unordered pieces.    34   1.2    2
AC119537|AC119537.5 Rattus norvegicus clone CH230-426J14, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34   1.2    2
AP006482|AP006482.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone: B1101E07.    36   1.8    3
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    36   1.9    7
AC013437|AC013437.8 Homo sapiens BAC clone RP11-190J23 from 2, complete sequence.    38   2.1    4
dna update 2004. 9.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080395_1(AF080395|pid:none) Entamoeba histolytica actin bindin...    78   1e-13
U70560_1(U70560|pid:none) Entamoeba histolytica actin binding pr...    69   9e-11
(Q1PRL4) RecName: Full=Tripartite motif-containing protein 71; A...    63   5e-09
AF220021_1(AF220021|pid:none) Homo sapiens tripartite motif prot...    61   2e-08
AF045239_1(AF045239|pid:none) Homo sapiens brain expressed ring ...    61   2e-08
AF220022_1(AF220022|pid:none) Homo sapiens tripartite motif prot...    61   2e-08
(O75382) RecName: Full=Tripartite motif-containing protein 3; Al...    60   5e-08
BC151315_1(BC151315|pid:none) Bos taurus tripartite motif-contai...    60   5e-08
(Q9R1R2) RecName: Full=Tripartite motif-containing protein 3; Al...    59   9e-08
AK170029_1(AK170029|pid:none) Mus musculus NOD-derived CD11c +ve...    59   9e-08
protein update 2009. 3.31
PSORT 

 psg: 0.89  gvh: 0.39  alm: 0.36  top: 0.70  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHF631 is cyt
5' end seq. ID CHF631F
5' end seq. 
>CHF631F.Seq
ATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTT
ATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTAT
AAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 144
3' end seq. ID CHF631Z
3' end seq. 
>CHF631Z.Seq
NNNNNNNNNNGTTAAACCAGCCCCATCCGCTGAACACTCTTATGCTGAAGGTGAAGGTTT
AGTCAAAGTATTTGATAATGCCCCAGCTGAATTCACTATTTTCGCCGTTGACACTAAAGA
TGTTGCTCGTACCGATGGTGGTGATCCATTTGAAGTCGCTATCAATGGTCCAGATGGTTT
AGTCGTTGATGCCAAAGTTACCGATAACAATGACGGTACTTATGGTGTTGTCTATGATGC
CCCAGTTGAAGGTAACTACAATGTTAATGTCACCCTCCGTGGTAATCCAATCAAAAATAT
GCCAATCGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCATCATTCGGTTCATT
CACTTTTACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACCTATGGTGGTGATAA
ATTTGAAGTCTCTATCACTGGTCCAGCTGAAG
Length of 3' end seq. 452
Connected seq. ID CHF631P
Connected seq. 
>CHF631P.Seq
ATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTT
ATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTAT
AAATAAAAAAAAAA----------GTTAAACCAGCCCCATCCGCTGAACACTCTTATGCT
GAAGGTGAAGGTTTAGTCAAAGTATTTGATAATGCCCCAGCTGAATTCACTATTTTCGCC
GTTGACACTAAAGATGTTGCTCGTACCGATGGTGGTGATCCATTTGAAGTCGCTATCAAT
GGTCCAGATGGTTTAGTCGTTGATGCCAAAGTTACCGATAACAATGACGGTACTTATGGT
GTTGTCTATGATGCCCCAGTTGAAGGTAACTACAATGTTAATGTCACCCTCCGTGGTAAT
CCAATCAAAAATATGCCAATCGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCA
TCATTCGGTTCATTCACTTTTACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACC
TATGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCTGAAG
Length of connected seq. 576
Full length Seq ID -
Full length Seq. -
Length of full length seq. -