CHF624
Library CH
(Link to library)
Clone ID CHF624
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11718-1
Original site URL
Representative seq. ID CHF624P
(Link to Original site)
Representative DNA sequence
>CHF624 (CHF624Q) /CSM/CH/CHF6-A/CHF624Q.Seq.d/
CAACAACAACAACAACAACAAGATGAAGGTATAAGTATCAATAGTAGTAGTGGTAGTGTT
ACCAATATTTTAAAACCACCACAATCATTGATTGACCTTTGGAAATCAGTTTTACATATT
AGAATTGCAATCATTCAAAAACATCAAGAATCTCAATTATCAAATCACCCAAATGATGAG
ATAACAGAATCACAAAAGAGGAGAAGTGTTGATATGAGGACTCATTCTGAGTTTAGAGAA
TCAATCTATAAAGAAATTGCAGATAAAATCATTGATAATTCAATGTTTCTATTGGAGTTA
CAATCATATGATGAACTTTCAATTAATAATTCAATTAAACAAGAGATTAGCTCTGTATTA
TTTAAATTTATTTTATCAAATTCTTTACAAATCGAAGATATTAAAAATATAATGATCACT
AGAAGATCAAGAGCATACACTAGAACATTGGGATTACAAGCGATGAGAGATATATTGAAA
TGTACATCAGATCATACAATGAAACCAGAGGCATTATGTTTTATTGGTCCAXXXXXXXXX
XACANCANCANCANCACCAATTTCATCATCTAAATTTGAATCATTAAGAGATTCATTCTT
TAGTTTAATGGTAATTCAATTAGAATCATCATTATCATTTTTAAAGGAACAAAATAGATT
GTATTGGGGTAGAGGTGTTAATGGTGTTAGTAGTAATAGCAATAGCAATGGTGAAACACA
ATCAGGAGTATCATCACCAAATACTGCAAATAATTTAAAATCTCGTAGAATTTATAGAGT
AGAGAAATCTTATGTTGATTTATCAGATTCTTTAACATTGTTATATATAATTAGTTCTTT
TGAAAATGTTAAACAAAGACTATGTTCAACCACTTTTATGAATATTTTCCATTGTATACT
TCAAGTTGGTGATGAAACTCAAAGAAAATTAATATTAAGAATATTTAGAAGAATTTTACC
ATCAATTTCACCTTTAAAATTATTAGTACCAATGGATACTAGCTCAACAAGTATTAGTGG
TAATAGTAGTACCACCTCTATACCAACATCAAAAACTATATTTTCATTATTGTTGGAAAT
TTTAGGTGCTGTTTGTTTTTGGGGTTGTTCAAGTGATTTAAATGAAATTTCAAAACATAT
TGATCCACGTTATTTCATTTCATCAAATAATCAACACTATAATCTATATCGTACAAGTAG
TTATAGTGGTTCAAAAATTGATTCTTCACCACAATCANTCTNTTCAATNTTCGATAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
QQQQQQQDEGISINSSSGSVTNILKPPQSLIDLWKSVLHIRIAIIQKHQESQLSNHPNDE
ITESQKRRSVDMRTHSEFRESIYKEIADKIIDNSMFLLELQSYDELSINNSIKQEISSVL
FKFILSNSLQIEDIKNIMITRRSRAYTRTLGLQAMRDILKCTSDHTMKPEALCFIGP---

---TXXXXPISSSKFESLRDSFFSLMVIQLESSLSFLKEQNRLYWGRGVNGVSSNSNSNG
ETQSGVSSPNTANNLKSRRIYRVEKSYVDLSDSLTLLYIISSFENVKQRLCSTTFMNIFH
CILQVGDETQRKLILRIFRRILPSISPLKLLVPMDTSSTSISGNSSTTSIPTSKTIFSLL
LEILGAVCFWGCSSDLNEISKHIDPRYFISSNNQHYNLYRTSSYSGSKIDSSPQSXXSXF
DK


Translated Amino Acid sequence (All Frames)
Frame A:
QQQQQQQDEGISINSSSGSVTNILKPPQSLIDLWKSVLHIRIAIIQKHQESQLSNHPNDE
ITESQKRRSVDMRTHSEFRESIYKEIADKIIDNSMFLLELQSYDELSINNSIKQEISSVL
FKFILSNSLQIEDIKNIMITRRSRAYTRTLGLQAMRDILKCTSDHTMKPEALCFIGP---

---TXXXXPISSSKFESLRDSFFSLMVIQLESSLSFLKEQNRLYWGRGVNGVSSNSNSNG
ETQSGVSSPNTANNLKSRRIYRVEKSYVDLSDSLTLLYIISSFENVKQRLCSTTFMNIFH
CILQVGDETQRKLILRIFRRILPSISPLKLLVPMDTSSTSISGNSSTTSIPTSKTIFSLL
LEILGAVCFWGCSSDLNEISKHIDPRYFISSNNQHYNLYRTSSYSGSKIDSSPQSXXSXF
DK

Frame B:
nnnnnnkmkv*vsivvvvvlpif*nhhnh*ltfgnqfyilelqsfkniknlnyqitqmmr
*qnhkrgevli*glilslenqsikklqiksliiqcfywsynhmmnfqliiqlnkrlalyy
lnlfyqilykskilki**sledqehtlehwdykr*eiy*nvhqiiq*nqrhyvllv---

---xxxxhqfhhlnlnh*eihslv*w*fn*nhhyhf*rnkidcigvevlmvlvviaiamv
khnqeyhhqilqii*nlvefie*rnlmliyqil*hcyi*lvllkmlnkdyvqpll*ifsi
vyfklvmklken*y*eyleefyhqfhl*ny*yqwilaqqvlvvivvpplyqhqklyfhyc
wkf*vlfvfgvvqvi*mkfqnilihvisfhqiintiiyivqvvivvqklilhhnxsxqxs
ik

Frame C:
ttttttr*rykyq***w*cyqyfktttiid*pleisfty*ncnhsktsrisiikspk**d
nritkeekc*yedsf*v*rinl*rncr*nh**fnvsigvtii**tfn**fn*trd*lcii
*iyfikfftnrry*kyndh*kiksih*nigitsderyiemyirsynetrgimfyws---

---xxxxtnfii*i*iikrfil*fngnsiriiiiifkgtk*ivlg*rc*wc****q*qw*
ntirsiitkyck*fkis*nl*sreilc*firffniviyn*ff*kc*tktmfnhfyeyfpl
ytssw**nskkinikni*knftinftfkiistngy*lnky*w***yhlytniknyifiiv
gnfrcclflglfk*fk*nfkty*stlfhfik*stl*sisyk*l*wfkn*ffttixlfnxr
*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHF624 (CHF624Q) /CSM/CH/CHF6-A/CHF624Q.Seq.d/ 2353 0.0
SLA125 (SLA125Q) /CSM/SL/SLA1-B/SLA125Q.Seq.d/ 42 0.020
CHK132 (CHK132Q) /CSM/CH/CHK1-B/CHK132Q.Seq.d/ 42 0.020
CHH286 (CHH286Q) /CSM/CH/CHH2-D/CHH286Q.Seq.d/ 42 0.020
VFM717 (VFM717Q) /CSM/VF/VFM7-A/VFM717Q.Seq.d/ 40 0.080
VFM220 (VFM220Q) /CSM/VF/VFM2-A/VFM220Q.Seq.d/ 40 0.080
VFL745 (VFL745Q) /CSM/VF/VFL7-B/VFL745Q.Seq.d/ 40 0.080
VFI890 (VFI890Q) /CSM/VF/VFI8-D/VFI890Q.Seq.d/ 40 0.080
VFG782 (VFG782Q) /CSM/VF/VFG7-D/VFG782Q.Seq.d/ 40 0.080
VFG133 (VFG133Q) /CSM/VF/VFG1-B/VFG133Q.Seq.d/ 40 0.080

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 38 2e-13 26
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 2e-12 26
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 40 3e-12 25
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome. 36 2e-11 31
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 34 3e-10 24
AE014836|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence. 38 4e-10 18
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 36 1e-09 34
CP000013|CP000013.1 Borrelia garinii PBi, complete genome. 34 8e-09 29
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 9e-09 27
CR940353|CR940353.1 Theileria annulata genomic DNA chromosome 4. 36 1e-08 30
dna update 2005. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(A8MEA0) RecName: Full=Chromosomal replication initiator protein... 39 0.28
AE001362_113(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.63
AK088078_1(AK088078|pid:none) Mus musculus 2 days neonate thymus... 35 5.3
AK157974_1(AK157974|pid:none) Mus musculus adult inner ear cDNA,... 35 5.3
AJ298076_1(AJ298076|pid:none) Mus musculus partial Tpr gene for ... 35 5.3
BC108349_1(BC108349|pid:none) Mus musculus translocated promoter... 35 5.3
AY902464_1(AY902464|pid:none) Xenopus laevis TPR (TPR) mRNA, par... 35 7.0
CP000153_174(CP000153|pid:none) Sulfurimonas denitrificans DSM 1... 35 7.0
BC025177_1(BC025177|pid:none) Homo sapiens translocated promoter... 34 9.1
AX683754_1(AX683754|pid:none) Sequence 1 from Patent WO03006499.... 34 9.1
protein update 2009. 3.31
PSORT

psg: 0.75 gvh: 0.28 alm: 0.28 top: 0.50 tms: 0.07 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
16.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: endoplasmic reticulum
12.0 %: plasma membrane
8.0 %: Golgi
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for CHF624 is cyt

5' end seq. ID CHF624F
5' end seq.
>CHF624F.Seq
CAACAACAACAACAACAACAAGATGAAGGTATAAGTATCAATAGTAGTAGTGGTAGTGTT
ACCAATATTTTAAAACCACCACAATCATTGATTGACCTTTGGAAATCAGTTTTACATATT
AGAATTGCAATCATTCAAAAACATCAAGAATCTCAATTATCAAATCACCCAAATGATGAG
ATAACAGAATCACAAAAGAGGAGAAGTGTTGATATGAGGACTCATTCTGAGTTTAGAGAA
TCAATCTATAAAGAAATTGCAGATAAAATCATTGATAATTCAATGTTTCTATTGGAGTTA
CAATCATATGATGAACTTTCAATTAATAATTCAATTAAACAAGAGATTAGCTCTGTATTA
TTTAAATTTATTTTATCAAATTCTTTACAAATCGAAGATATTAAAAATATAATGATCACT
AGAAGATCAAGAGCATACACTAGAACATTGGGATTACAAGCGATGAGAGATATATTGAAA
TGTACATCAGATCATACAATGAAACCAGAGGCATTATGTTTTATTGGTCCANNNNNNNNN
N
Length of 5' end seq. 541
3' end seq. ID CHF624Z
3' end seq.
>CHF624Z.Seq
NNNNNNNNNNACANCANCANCANCACCAATTTCATCATCTAAATTTGAATCATTAAGAGA
TTCATTCTTTAGTTTAATGGTAATTCAATTAGAATCATCATTATCATTTTTAAAGGAACA
AAATAGATTGTATTGGGGTAGAGGTGTTAATGGTGTTAGTAGTAATAGCAATAGCAATGG
TGAAACACAATCAGGAGTATCATCACCAAATACTGCAAATAATTTAAAATCTCGTAGAAT
TTATAGAGTAGAGAAATCTTATGTTGATTTATCAGATTCTTTAACATTGTTATATATAAT
TAGTTCTTTTGAAAATGTTAAACAAAGACTATGTTCAACCACTTTTATGAATATTTTCCA
TTGTATACTTCAAGTTGGTGATGAAACTCAAAGAAAATTAATATTAAGAATATTTAGAAG
AATTTTACCATCAATTTCACCTTTAAAATTATTAGTACCAATGGATACTAGCTCAACAAG
TATTAGTGGTAATAGTAGTACCACCTCTATACCAACATCAAAAACTATATTTTCATTATT
GTTGGAAATTTTAGGTGCTGTTTGTTTTTGGGGTTGTTCAAGTGATTTAAATGAAATTTC
AAAACATATTGATCCACGTTATTTCATTTCATCAAATAATCAACACTATAATCTATATCG
TACAAGTAGTTATAGTGGTTCAAAAATTGATTCTTCACCACAATCANTCTNTTCAATNTT
CGATAAAA
Length of 3' end seq. 728
Connected seq. ID CHF624P
Connected seq.
>CHF624P.Seq
CAACAACAACAACAACAACAAGATGAAGGTATAAGTATCAATAGTAGTAGTGGTAGTGTT
ACCAATATTTTAAAACCACCACAATCATTGATTGACCTTTGGAAATCAGTTTTACATATT
AGAATTGCAATCATTCAAAAACATCAAGAATCTCAATTATCAAATCACCCAAATGATGAG
ATAACAGAATCACAAAAGAGGAGAAGTGTTGATATGAGGACTCATTCTGAGTTTAGAGAA
TCAATCTATAAAGAAATTGCAGATAAAATCATTGATAATTCAATGTTTCTATTGGAGTTA
CAATCATATGATGAACTTTCAATTAATAATTCAATTAAACAAGAGATTAGCTCTGTATTA
TTTAAATTTATTTTATCAAATTCTTTACAAATCGAAGATATTAAAAATATAATGATCACT
AGAAGATCAAGAGCATACACTAGAACATTGGGATTACAAGCGATGAGAGATATATTGAAA
TGTACATCAGATCATACAATGAAACCAGAGGCATTATGTTTTATTGGTCCA---------
-ACANCANCANCANCACCAATTTCATCATCTAAATTTGAATCATTAAGAGATTCATTCTT
TAGTTTAATGGTAATTCAATTAGAATCATCATTATCATTTTTAAAGGAACAAAATAGATT
GTATTGGGGTAGAGGTGTTAATGGTGTTAGTAGTAATAGCAATAGCAATGGTGAAACACA
ATCAGGAGTATCATCACCAAATACTGCAAATAATTTAAAATCTCGTAGAATTTATAGAGT
AGAGAAATCTTATGTTGATTTATCAGATTCTTTAACATTGTTATATATAATTAGTTCTTT
TGAAAATGTTAAACAAAGACTATGTTCAACCACTTTTATGAATATTTTCCATTGTATACT
TCAAGTTGGTGATGAAACTCAAAGAAAATTAATATTAAGAATATTTAGAAGAATTTTACC
ATCAATTTCACCTTTAAAATTATTAGTACCAATGGATACTAGCTCAACAAGTATTAGTGG
TAATAGTAGTACCACCTCTATACCAACATCAAAAACTATATTTTCATTATTGTTGGAAAT
TTTAGGTGCTGTTTGTTTTTGGGGTTGTTCAAGTGATTTAAATGAAATTTCAAAACATAT
TGATCCACGTTATTTCATTTCATCAAATAATCAACACTATAATCTATATCGTACAAGTAG
TTATAGTGGTTCAAAAATTGATTCTTCACCACAATCANTCTNTTCAATNTTCGATAAAA
Length of connected seq. 1249
Full length Seq ID -
Full length Seq. -
Length of full length seq. -