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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF611
Library CH
(Link to library)
Clone ID CHF611
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15926-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHF611 (CHF611Q) /CSM/CH/CHF6-A/CHF611Q.Seq.d/
XXXXXXXXXXGAAGTTCAAGCATTGGCTCATGATTTCCTTACCGATCATATTCAAGTTCA
CATTGGTTCAACAGAGATCACTGCAAATCATAACGTTAGACAAATCGTTGAGGTTTGTCA
AGACTTTGAAAAGAAGGAAAGAATGTTAAGTTTTTTAGGAAGTGTTGGTCGTGATGAAAA
AGTTATTGTCTTTGCCGAAACTAGAAAAGGTGTCGATGATCTTCAACGTGTTTTACAATT
TTCAGGTTTCAAATCAATTGGTATTCATGGTAATAAATCTCAACCAGAAAGAGATTTTGT
TTTATCTCAATTTAAAAATGGTATGGTTCCAATTATGATTGCAACAGATGTAGCTTCTCG
TGGTTTAGATATCAAGGATATTAAATATGTAGTAAACTATGACTTCCCAAACACAATAGA
AGTTTATATTCACCGTATTGGTCGTACTGCTAGAGCTGGAGCATCCGGTGTCAGTTATTC
ATTATTAACAACAGATAATGCACGTTTGGCTAACGAATTAATTAAAGTATTAACTGAGGC
AAAACAAAAAATACCAATTGAACTTTCAAATCTTTCCGTTACTCCAAGTACATCTTCAAA
TACTGA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---VQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKV
IVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRG
LDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVLTEAK
QKIPIELSNLSVTPSTSSNT
Translated Amino Acid sequence (All Frames) 
Frame A:
---kfkhwlmislpiifkftlvqqrslqiitldkslrfvktlkrrkec*vf*evlvvmkk
llslpklekvsmifnvfynfqvsnqlvfmvinlnqkeilfylnlkmvwfql*lqqm*llv
v*isrilnm**tmtsqtq*kfiftvlvvllelehpvsvihy*qqimhvwltn*lky*lrq
nkkyqlnfqifpllqvhlqil


Frame B:
---sssigs*fpyrsyssshwfnrdhcks*r*tnr*glsrl*kegknvkffrkcws**ks
yclcrn*krcr*sstcftifrfqinwysw**istrkrfcfisi*kwygsnydcnrcsfsw
fryqgy*icskl*lpkhnrslyspywsyc*swsircqlfiinnr*ctfg*rin*sin*gk
tkntn*tfksfryskyifky*


Frame C:
---VQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKV
IVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRG
LDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVLTEAK
QKIPIELSNLSVTPSTSSNT
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF611 (CHF611Q) /CSM/CH/CHF6-A/CHF611Q.Seq.d/                       1181   0.0
CHL206 (CHL206Q) /CSM/CH/CHL2-A/CHL206Q.Seq.d/                       1170   0.0
CHP763 (CHP763Q) /CSM/CH/CHP7-C/CHP763Q.Seq.d/                       1047   0.0
VHL191 (VHL191Q) /CSM/VH/VHL1-D/VHL191Q.Seq.d/                       1031   0.0
AHM168 (AHM168Q) /CSM/AH/AHM1-C/AHM168Q.Seq.d/                        983   0.0
CHL887 (CHL887Q) /CSM/CH/CHL8-D/CHL887Q.Seq.d/                        880   0.0
FC-BG12 (FC-BG12Q) /CSM/FC/FC-BG/FC-BG12Q.Seq.d/                      870   0.0
CHM549 (CHM549Q) /CSM/CH/CHM5-C/CHM549Q.Seq.d/                        858   0.0
SSM111 (SSM111Q) /CSM/SS/SSM1-A/SSM111Q.Seq.d/                        795   0.0
CHF160 (CHF160Q) /CSM/CH/CHF1-C/CHF160Q.Seq.d/                        250   2e-65
own update 2002. 9.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CZ533358|CZ533358.1 SRAA-aac84f09.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    62   2e-07  2
CF227937|CF227937.1 PtaXM0006F4F0412 Poplar cDNA library from mature xylem Populus albax Populus tremula cDNA 5', mRNA sequence.    68   2e-07  1
CX707422|CX707422.1 gmrtDrNS01_24-C_M13R_B07_061.s1 Water stressed 5h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.    58   2e-07  2
CX707618|CX707618.1 gmrtDrNS01_26-C_M13R_C09_075.s1 Water stressed 5h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.    58   2e-07  2
CX707230|CX707230.1 gmrtDrNS01_22-C_M13R_A05_047.s1 Water stressed 5h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.    58   2e-07  2
BI321646|BI321646.1 saf15g11.y3 Gm-c1076 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1076-1078 5' similar to TR:Q9ZS02 Q9ZS02 RNA HELICASE ;, mRNA sequence.    58   2e-07  2
AW705217|AW705217.1 sk43b12.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-5304 5' similar to TR:Q9ZS02 Q9ZS02 RNA HELICASE ;, mRNA sequence.    58   2e-07  2
CZ533238|CZ533238.1 SRAA-aac84a06.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    54   4e-05  2
CX704920|CX704920.1 gmrtDrNS01_36-B_M13R_F04_022.s1 Water stressed 5h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.    50   5e-05  2
DN487529|DN487529.1 Q035E10.3pR Populus dormant bud cDNA library Populus tremula cDNA clone Q035E10 3', mRNA sequence.    60   5e-05  1
dna update 2005. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54CE0) RecName: Full=Probable ATP-dependent RNA helicase ddx17...   387   e-106
(Q5KFM6) RecName: Full=ATP-dependent RNA helicase DBP2-A;       ...   218   8e-56
AE017346_128(AE017346|pid:none) Cryptococcus neoformans var. neo...   218   8e-56
(Q1DP69) RecName: Full=ATP-dependent RNA helicase DBP2;         ...   213   4e-54
(Q2U070) RecName: Full=ATP-dependent RNA helicase dbp2;         ...   204   1e-51
(Q4X195) RecName: Full=ATP-dependent RNA helicase dbp2;         ...   203   3e-51
(A6RGE3) RecName: Full=ATP-dependent RNA helicase DBP2;         ...   203   3e-51
(A7E449) RecName: Full=ATP-dependent RNA helicase dbp2;         ...   203   3e-51
AF110007_1(AF110007|pid:none) Molgula oculata p68 RNA helicase (...   202   4e-51
(Q5B0J9) RecName: Full=ATP-dependent RNA helicase dbp2;         ...   202   4e-51
protein update 2009. 5.18
PSORT 

 psg: 0.75  gvh: 0.30  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHF611 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHF611Z
3' end seq. 
>CHF611Z.Seq
NNNNNNNNNNGAAGTTCAAGCATTGGCTCATGATTTCCTTACCGATCATATTCAAGTTCA
CATTGGTTCAACAGAGATCACTGCAAATCATAACGTTAGACAAATCGTTGAGGTTTGTCA
AGACTTTGAAAAGAAGGAAAGAATGTTAAGTTTTTTAGGAAGTGTTGGTCGTGATGAAAA
AGTTATTGTCTTTGCCGAAACTAGAAAAGGTGTCGATGATCTTCAACGTGTTTTACAATT
TTCAGGTTTCAAATCAATTGGTATTCATGGTAATAAATCTCAACCAGAAAGAGATTTTGT
TTTATCTCAATTTAAAAATGGTATGGTTCCAATTATGATTGCAACAGATGTAGCTTCTCG
TGGTTTAGATATCAAGGATATTAAATATGTAGTAAACTATGACTTCCCAAACACAATAGA
AGTTTATATTCACCGTATTGGTCGTACTGCTAGAGCTGGAGCATCCGGTGTCAGTTATTC
ATTATTAACAACAGATAATGCACGTTTGGCTAACGAATTAATTAAAGTATTAACTGAGGC
AAAACAAAAAATACCAATTGAACTTTCAAATCTTTCCGTTACTCCAAGTACATCTTCAAA
TACTGA
Length of 3' end seq. 606
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -