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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF579
Library CH
(Link to library)
Clone ID CHF579
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16433-1
Original site URL
Representative seq. ID CHF579P
(Link to Original site)
Representative DNA sequence 
>CHF579 (CHF579Q) /CSM/CH/CHF5-D/CHF579Q.Seq.d/
ATCTTACCATTTTTATTTATTTATTNATTAAATTATTATTTATTTATTAAAATTATTATT
TATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTA
TAAATAAAAAAAAAAXXXXXXXXXXGTTTAGTCAAAGTATTTGATAATGCCCCAGCTGAA
TTCACTATNTTCGCCGTTGACACTAAAGATGTTGCTCGTACCGATGGTGGTGATCCATTT
GAAGTCGCTATCAATGGTCCAGATGGTTTAGTCGTTGATGCCAAAGTTACCGATAACAAT
GACGGTACTTATGGTGTTGTCTATGATGCCCCAGTTGAAGGTAACTACAATGTTAATGTC
ACCCTCCGTGGTAATCCAATCAAAAATATGCCAATCGATGTCAAATGCATTGAAGGTGCC
AATGGTGAAGATTCATCATTCGGTTCATTCACTTTTACCGTCGCTGCTAAAAATAAGAAA
GGTGAAGTTAAAACCTATGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCTGAA
GA
sequence update 2002.10.25
Translated Amino Acid sequence 
ltifiylxikllfiy*NYYLLSCVNYLPINFNILYIYSCINKKK---

---LVKVFDNAPAEFTXFAVDTKDVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGV
VYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTY
GGDKFEVSITGPAE
Translated Amino Acid sequence (All Frames) 
Frame A:
ilpflfiyxlnyylfikiiiy*vv*ttfq*ilifciyilv*ikkk---

---v*skylimpqlnslxspltlkmllvpmvvihlkslsmvqmv*slmpklpitmtvlmv
lsmmpqlkvttmlmspsvviqskicqsmsnalkvpmvkihhsvhsllpsllkirkvklkp
mvvinlkslslvqlk

Frame B:
syhfylfix*iiiyllkllfielcklpsnkf*yfvyiflyk*kk---

---fsqsi**cps*ihyxrr*h*rccsyrww*si*sryqwsrwfsr*cqsyr*q*rylwc
cl*cps*r*lqc*chppw*snqkyanrcqmh*rcqw*rfiirfihfyrrc*k*er*s*nl
ww**i*slyhwss*r

Frame C:
ltifiylxikllfiy*NYYLLSCVNYLPINFNILYIYSCINKKK---

---LVKVFDNAPAEFTXFAVDTKDVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGV
VYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTY
GGDKFEVSITGPAE
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF579 (CHF579Q) /CSM/CH/CHF5-D/CHF579Q.Seq.d/                        781   0.0
CHF631 (CHF631Q) /CSM/CH/CHF6-B/CHF631Q.Seq.d/                        779   0.0
VHQ357 (VHQ357Q) /CSM/VH/VHQ3-C/VHQ357Q.Seq.d/                        773   0.0
VHQ144 (VHQ144Q) /CSM/VH/VHQ1-B/VHQ144Q.Seq.d/                        773   0.0
VHP348 (VHP348Q) /CSM/VH/VHP3-B/VHP348Q.Seq.d/                        773   0.0
VHN879 (VHN879Q) /CSM/VH/VHN8-D/VHN879Q.Seq.d/                        773   0.0
VHN353 (VHN353Q) /CSM/VH/VHN3-C/VHN353Q.Seq.d/                        773   0.0
VHN315 (VHN315Q) /CSM/VH/VHN3-A/VHN315Q.Seq.d/                        773   0.0
VHM484 (VHM484Q) /CSM/VH/VHM4-D/VHM484Q.Seq.d/                        773   0.0
VHL789 (VHL789Q) /CSM/VH/VHL7-D/VHL789Q.Seq.d/                        773   0.0
own update 2002. 9.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X15430|X15430.1 Dictyostelium discoideum mRNA for gelation factor.   773   0.0    3
AL356308|AL356308.16 Human DNA sequence from clone RP11-475L16 on chromosome 10.    48   0.16   1
AQ543434|AQ543434.1 RPCI-11-349G2.TV RPCI-11 Homo sapiens genomic clone RPCI-11-349G2, genomic survey sequence.    48   0.16   1
AC079798|AC079798.2 Homo sapiens chromosome 4 clone RP11-661K10, WORKING DRAFT SEQUENCE, 14 unordered pieces.    40   0.18   4
CR940353|CR940353.1 Theileria annulata genomic DNA chromosome 4.    36   0.30   2
CC917029|CC917029.1 t097n16ba.f1 TAMBT Bos taurus genomic clone t097n16ba, genomic survey sequence.    38   1.1    2
AC123148|AC123148.5 Rattus norvegicus clone CH230-43D20, WORKING DRAFT SEQUENCE, 2 unordered pieces.    34   1.2    2
AC119537|AC119537.5 Rattus norvegicus clone CH230-426J14, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34   1.3    2
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    36   1.3    7
AX344559|AX344559.1 Sequence 10 from Patent WO0200932.             36   1.5    7
dna update 2005. 7.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080395_1(AF080395|pid:none) Entamoeba histolytica actin bindin...    76   5e-13
U70560_1(U70560|pid:none) Entamoeba histolytica actin binding pr...    60   3e-08
AB056474_1(AB056474|pid:none) Gallus gallus mRNA for filamin, co...    56   5e-07
BX664723_1(BX664723|pid:none) Human DNA sequence from clone WI2-...    55   8e-07
AL807376_3(AL807376|pid:none) Mouse DNA sequence from clone RP23...    55   1e-06
AK131179_1(AK131179|pid:none) Mus musculus mRNA for mFLJ00343 pr...    54   2e-06
BC151024_1(BC151024|pid:none) Mus musculus filamin, alpha, mRNA ...    54   2e-06
AL807376_2(AL807376|pid:none) Mouse DNA sequence from clone RP23...    54   2e-06
FJ416060_1(FJ416060|pid:none) Rattus norvegicus filamin alpha (F...    54   2e-06
AL807376_1(AL807376|pid:none) Mouse DNA sequence from clone RP23...    54   2e-06
protein update 2009. 3.31
PSORT 

 psg: 0.89  gvh: 0.31  alm: 0.39  top: 0.60  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane

>> prediction for CHF579 is cyt
5' end seq. ID CHF579F
5' end seq. 
>CHF579F.Seq
ATCTTACCATTTTTATTTATTTATTNATTAAATTATTATTTATTTATTAAAATTATTATT
TATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTA
TAAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 145
3' end seq. ID CHF579Z
3' end seq. 
>CHF579Z.Seq
NNNNNNNNNNGTTTAGTCAAAGTATTTGATAATGCCCCAGCTGAATTCACTATNTTCGCC
GTTGACACTAAAGATGTTGCTCGTACCGATGGTGGTGATCCATTTGAAGTCGCTATCAAT
GGTCCAGATGGTTTAGTCGTTGATGCCAAAGTTACCGATAACAATGACGGTACTTATGGT
GTTGTCTATGATGCCCCAGTTGAAGGTAACTACAATGTTAATGTCACCCTCCGTGGTAAT
CCAATCAAAAATATGCCAATCGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCA
TCATTCGGTTCATTCACTTTTACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACC
TATGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCTGAAGA
Length of 3' end seq. 407
Connected seq. ID CHF579P
Connected seq. 
>CHF579P.Seq
ATCTTACCATTTTTATTTATTTATTNATTAAATTATTATTTATTTATTAAAATTATTATT
TATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTA
TAAATAAAAAAAAAA----------GTTTAGTCAAAGTATTTGATAATGCCCCAGCTGAA
TTCACTATNTTCGCCGTTGACACTAAAGATGTTGCTCGTACCGATGGTGGTGATCCATTT
GAAGTCGCTATCAATGGTCCAGATGGTTTAGTCGTTGATGCCAAAGTTACCGATAACAAT
GACGGTACTTATGGTGTTGTCTATGATGCCCCAGTTGAAGGTAACTACAATGTTAATGTC
ACCCTCCGTGGTAATCCAATCAAAAATATGCCAATCGATGTCAAATGCATTGAAGGTGCC
AATGGTGAAGATTCATCATTCGGTTCATTCACTTTTACCGTCGCTGCTAAAAATAAGAAA
GGTGAAGTTAAAACCTATGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCTGAA
GA
Length of connected seq. 532
Full length Seq ID -
Full length Seq. -
Length of full length seq. -