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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF526
Library CH
(Link to library)
Clone ID CHF526
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16433-1
Original site URL
Representative seq. ID CHF526P
(Link to Original site)
Representative DNA sequence 
>CHF526 (CHF526Q) /CSM/CH/CHF5-B/CHF526Q.Seq.d/
CTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTTAT
TGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTATAA
ATAAAAAAAAAAXXXXXXXXXXCTTATGCTGAAGGTGAAGGTTTAGTCAAAGTATTTGAT
AATGCCCCAGCTGAATTCACTATTTTCGCCGTTGACACTAAAGGTGTTGCTCGTACCGAT
GGTGGTGATCCATTTGAAGTCGCTATCAATGGTCCAGATGGTTTAGTCGTTGATGCCAAA
GTTACCGATAACAATGACGGTACTTATGGTGTTGTCTATGATGCCCCAGTTGAAGGTAAC
TACAATGTTAATGTCACCCTCCGTGGTAATCCAATCAAAAATATGCCAATCGATGTCAAA
TGCATTGAAGGTGCCAATGGTGAAGATTCATCATTCGGTTCATTCACTTTTACCGTCGCT
GCTAAAAATAAGAAAGGTGAAGTTAAAACCTATGGTGGTGATAAATTTGAAGTCTCTATC
ACTGGTCCAGCTGAAGAA
sequence update 2002.10.25
Translated Amino Acid sequence 
yhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIYSCINKKK---

---YAEGEGLVKVFDNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNN
DGTYGVVYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKK
GEVKTYGGDKFEVSITGPAEE
Translated Amino Acid sequence (All Frames) 
Frame A:
ltifiylfikllfiy*iiiy*vv*ttfq*ilifciyilv*ikkk---

---lmlkvkv*skylimpqlnslfspltlkvllvpmvvihlkslsmvqmv*slmpklpit
mtvlmvlsmmpqlkvttmlmspsvviqskicqsmsnalkvpmvkihhsvhsllpsllkir
kvklkpmvvinlkslslvqlk

Frame B:
lpflfiyllnyylfikllfielcklpsnkf*yfvyiflyk*kk---

---lc*r*rfsqsi**cps*ihyfrr*h*rccsyrww*si*sryqwsrwfsr*cqsyr*q
*rylwccl*cps*r*lqc*chppw*snqkyanrcqmh*rcqw*rfiirfihfyrrc*k*e
r*s*nlww**i*slyhwss*r

Frame C:
yhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIYSCINKKK---

---YAEGEGLVKVFDNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNN
DGTYGVVYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKK
GEVKTYGGDKFEVSITGPAEE
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ144 (VHQ144Q) /CSM/VH/VHQ1-B/VHQ144Q.Seq.d/                        825   0.0
VHN879 (VHN879Q) /CSM/VH/VHN8-D/VHN879Q.Seq.d/                        825   0.0
VHN353 (VHN353Q) /CSM/VH/VHN3-C/VHN353Q.Seq.d/                        825   0.0
VHI544 (VHI544Q) /CSM/VH/VHI5-B/VHI544Q.Seq.d/                        825   0.0
VHC802 (VHC802Q) /CSM/VH/VHC8-A/VHC802Q.Seq.d/                        825   0.0
VHC710 (VHC710Q) /CSM/VH/VHC7-A/VHC710Q.Seq.d/                        825   0.0
VHB620 (VHB620Q) /CSM/VH/VHB6-A/VHB620Q.Seq.d/                        825   0.0
VFK681 (VFK681Q) /CSM/VF/VFK6-D/VFK681Q.Seq.d/                        825   0.0
SLH892 (SLH892Q) /CSM/SL/SLH8-D/SLH892Q.Seq.d/                        825   0.0
SLC663 (SLC663Q) /CSM/SL/SLC6-C/SLC663Q.Seq.d/                        825   0.0
own update 2003.10. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X15430|X15430.1 Dictyostelium discoideum mRNA for gelation factor.   825   0.0    3
AL356308|AL356308.16 Human DNA sequence from clone RP11-475L16 on chromosome 10.    48   0.15   1
AQ543434|AQ543434.1 RPCI-11-349G2.TV RPCI-11 Homo sapiens genomic clone RPCI-11-349G2, genomic survey sequence.    48   0.15   1
AC079798|AC079798.2 Homo sapiens chromosome 4 clone RP11-661K10, WORKING DRAFT SEQUENCE, 14 unordered pieces.    40   0.18   4
CC917029|CC917029.1 t097n16ba.f1 TAMBT Bos taurus genomic clone t097n16ba, genomic survey sequence.    38   1.0    2
AC123148|AC123148.5 Rattus norvegicus clone CH230-43D20, WORKING DRAFT SEQUENCE, 2 unordered pieces.    34   1.2    2
AC119537|AC119537.5 Rattus norvegicus clone CH230-426J14, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34   1.2    2
AP006482|AP006482.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone: B1101E07.    36   1.6    3
AX344559|AX344559.1 Sequence 10 from Patent WO0200932.             36   1.6    7
AC013437|AC013437.8 Homo sapiens BAC clone RP11-190J23 from 2, complete sequence.    38   1.8    4
dna update 2004. 9.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080395_1(AF080395|pid:none) Entamoeba histolytica actin bindin...    81   2e-14
U70560_1(U70560|pid:none) Entamoeba histolytica actin binding pr...    68   1e-10
(Q1PRL4) RecName: Full=Tripartite motif-containing protein 71; A...    65   1e-09
AF220021_1(AF220021|pid:none) Homo sapiens tripartite motif prot...    62   1e-08
AF045239_1(AF045239|pid:none) Homo sapiens brain expressed ring ...    62   1e-08
AF220022_1(AF220022|pid:none) Homo sapiens tripartite motif prot...    62   1e-08
(O75382) RecName: Full=Tripartite motif-containing protein 3; Al...    60   3e-08
BC151315_1(BC151315|pid:none) Bos taurus tripartite motif-contai...    60   3e-08
(Q9R1R2) RecName: Full=Tripartite motif-containing protein 3; Al...    60   5e-08
AK170029_1(AK170029|pid:none) Mus musculus NOD-derived CD11c +ve...    60   5e-08
protein update 2009. 3.31
PSORT 

 psg: 0.89  gvh: 0.39  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHF526 is cyt
5' end seq. ID CHF526F
5' end seq. 
>CHF526F.Seq
CTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTTAT
TGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTATAA
ATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 142
3' end seq. ID CHF526Z
3' end seq. 
>CHF526Z.Seq
NNNNNNNNNNCTTATGCTGAAGGTGAAGGTTTAGTCAAAGTATTTGATAATGCCCCAGCT
GAATTCACTATTTTCGCCGTTGACACTAAAGGTGTTGCTCGTACCGATGGTGGTGATCCA
TTTGAAGTCGCTATCAATGGTCCAGATGGTTTAGTCGTTGATGCCAAAGTTACCGATAAC
AATGACGGTACTTATGGTGTTGTCTATGATGCCCCAGTTGAAGGTAACTACAATGTTAAT
GTCACCCTCCGTGGTAATCCAATCAAAAATATGCCAATCGATGTCAAATGCATTGAAGGT
GCCAATGGTGAAGATTCATCATTCGGTTCATTCACTTTTACCGTCGCTGCTAAAAATAAG
AAAGGTGAAGTTAAAACCTATGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCT
GAAGAA
Length of 3' end seq. 426
Connected seq. ID CHF526P
Connected seq. 
>CHF526P.Seq
CTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTTAT
TGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTATAA
ATAAAAAAAAAA----------CTTATGCTGAAGGTGAAGGTTTAGTCAAAGTATTTGAT
AATGCCCCAGCTGAATTCACTATTTTCGCCGTTGACACTAAAGGTGTTGCTCGTACCGAT
GGTGGTGATCCATTTGAAGTCGCTATCAATGGTCCAGATGGTTTAGTCGTTGATGCCAAA
GTTACCGATAACAATGACGGTACTTATGGTGTTGTCTATGATGCCCCAGTTGAAGGTAAC
TACAATGTTAATGTCACCCTCCGTGGTAATCCAATCAAAAATATGCCAATCGATGTCAAA
TGCATTGAAGGTGCCAATGGTGAAGATTCATCATTCGGTTCATTCACTTTTACCGTCGCT
GCTAAAAATAAGAAAGGTGAAGTTAAAACCTATGGTGGTGATAAATTTGAAGTCTCTATC
ACTGGTCCAGCTGAAGAA
Length of connected seq. 548
Full length Seq ID -
Full length Seq. -
Length of full length seq. -