CHF491 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHF491
Library	CH (Link to library)
Clone ID	CHF491 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11302-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHF4-D/CHF491Q.Seq.d/
Representative seq. ID	CHF491P (Link to Original site)
Representative DNA sequence	>CHF491 (CHF491Q) /CSM/CH/CHF4-D/CHF491Q.Seq.d/ AATAAACTACAAATTTGGATGTTAAATTAATTATAATTTGTTAATATAACATTTTGTATA TATATATATATAAAAAATAAAAAACTCAAATGACAGGATTTTCAATTCCTAATATGAGTA TGTTACTCAAATTAGCAAATAGTAGATTGGTATTACATAAAAATAAAAATTTTGAACAAA GTAATGTTCATAAAAAAGAGATTGCAGAATTATTACAATTAGGTAAAGAAGAACAAGCAA GAGTTAGAACGGTTTCAGTTATTAATGAAGATTATCACACTGAAGTTTTAGGTATTTTAA TTATTTATTGTGAAACTTTAGCAAATAGAATTAGAGGAATTGAAGGTGTAAAGGTATGCC CACCAGATTTAAAAGAAGCATGTTGTAGTATTATATTTGCATCACCATATTTAGATAAAC AAGTTGAATTATATAAGATTAGAAAGAGATTAATTGAAAAATTTGGTAAAAAATTCCCAG AGGAATGTATAGATTGTTGTTGTATCAATCCAAAGATTGTACATAGATTATCAAATAAAC CACCTGAAGAATCATTGGTAAACTATTATCTTAGTAATATTGCAAAGAAACATAATGTAG CCTGGGATACTCCAGCATTACCACCTTTAGTTGATTTACAACAAAGTATTCCTGATTTCA XXXXXXXXXXTGAATATTTCAATACTCCTGCCAGTTTATATAGCAATTCAAGCCGTTCTC TCTTTGTATGCATCTGGTCGTACCACTGGTACCGTATTGGATTGTGGTGATGGTGTTTGT CATACCGTGCCAATCTATGAAGGTTATTCTATTCCACATGCAATTAAAAGAATCGATATC GGTGGTCGTGATATCACAGAGTATTTAATGCGTTTACTCACTGAAAGAGGTTATGCTTTC ACTACAACCGCCGAAAGAGAAATCGTACGTGATATCAAAGAGAAAACTTCATTTGTCTCT CAAGATTTCTATGCCTCTATGAATGCTCCAGAGGATAATAATATACTCAAGGATTATACG ATGCCCGATAAACAAGTTTTAACCATTGATAAAGAAAGATTCCGTTGTTATGAAGCTTTC TTTGACCCTTCAGTACTAGGTAAAGATCAAAATGGTATTCATCACCTCTTAAATGAAACT ATCACCTCTTGTGATATTGATATTCGTCGTGATCTCTATAAAAATATTGTAGTTTCTGGT GGTTCAACAATGGCAACAGGTTTTGAAAAACGTTTACAAAAAGAAATGGAACTTTTAGTT TCAAATCCTCAAGTCCAAATTAAAATTAATGCACCACCAAATCGTGATATTAGTGTTTGG TGTGGTGGTTCGGTTTTAGGTGATCTTAAAACTTTTTCGGATCAATGGATTACAAAACAA GAATATGATGAAGTTGGTAGAGGAATTGTTCATAGAAAATGTTTTTAAATAAATAAAATA ATAAATAATATTTTAAAATA
sequence update	2002.10.25
Translated Amino Acid sequence	ttnldvkliiicynilyiyiykkKTQMTGFSIPNMSMLLKLANSRLVLHKNKNFEQS NVHKKEIAELLQLGKEEQARVRTVSVINEDYHTEVLGILIIYCETLANRIRGIEGVKVCP PDLKEACCSIIFASPYLDKQVELYKIRKRLIEKFGKKFPEECIDCCCINPKIVHRLSNKP PEESLVNYYLSNIAKKHNVAWDTPALPPLVDLQQSIPDF--- ---NISILLPVYIAIQAVLSLYASGRTTGTVLDCGDGVCHTVPIYEGYSIPHAIKRIDIG GRDITEYLMRLLTERGYAFTTTAEREIVRDIKEKTSFVSQDFYASMNAPEDNNILKDYTM PDKQVLTIDKERFRCYEAFFDPSVLGKDQNGIHHLLNETITSCDIDIRRDLYKNIVVSGG STMATGFEKRLQKEMELLVSNPQVQIKINAPPNRDISVWCGGSVLGDLKTFSDQWITKQE YDEVGRGIVHRKCFinkiinnilk
Translated Amino Acid sequence (All Frames)	Frame A: nklqiwmlnlfvnitfciyiyiknkklkqdfqflivcysnqivdwyyikikilnk vmfikkrlqnyynvkknkqelerfqllmkiitlkfvflfivklqieleelkvrya hqikkhvvvlylhhhiinklnyirlerdlknlvknsqrnvivvvsiqrlyidyqin hlknhwtiilvilqrnimpgilqhyhlliynkvflis--- ---ifqyscqfiqfkpfslcmhlvvplvpywivvmvfvipcqsmkvilfhmqlkesis vvvisqsicvyslkevmlslqppkeksyviskrklhlslkismplmlqriiiysriir cpinkfplikkdsvvmklsltlqyvkikmvfitsmklsplvilifvvisikilflv vqqwqqvlknvykkkwnffqilksklklmhhqivilvfgvvvrfvilklfringlqnk nmmklveelfienvfkik*iifn Frame B: inykfgcinynllihfvyiyikiknsndrifnsyeyvtqisk*igitkkftk cskrdcriitirrrtsksngfsy*rlshsfryfnyllnfsknrnrckgmp trfkrsmlyyicitifrtsiidkeinkiwkiprgmyrlllyqskdctiikt triigklls*ycketcslgyssittfsfttkysf--- ---eyfntpaslysnssrslfvciwsyhwyriglwwclsyranlrlfystcnknryr wsyhrvfnafthkrlcfhynrrkrnrtyqrenficlsrflclyecsrg*ytqglyd artsfnh*rkipllsflpfstrrskwyssplknyhllyyssslkycsfww fnngnrfktftkrngtfsfkssspnncttksyclvwwfgfrsnffgsmdyktr i*swrncskmflnknnkyfki Frame C: ttnldvkliiicynilyiyiykkKTQMTGFSIPNMSMLLKLANSRLVLHKNKNFEQS NVHKKEIAELLQLGKEEQARVRTVSVINEDYHTEVLGILIIYCETLANRIRGIEGVKVCP PDLKEACCSIIFASPYLDKQVELYKIRKRLIEKFGKKFPEECIDCCCINPKIVHRLSNKP PEESLVNYYLSNIAKKHNVAWDTPALPPLVDLQQSIPDF--- ---NISILLPVYIAIQAVLSLYASGRTTGTVLDCGDGVCHTVPIYEGYSIPHAIKRIDIG GRDITEYLMRLLTERGYAFTTTAEREIVRDIKEKTSFVSQDFYASMNAPEDNNILKDYTM PDKQVLTIDKERFRCYEAFFDPSVLGKDQNGIHHLLNETITSCDIDIRRDLYKNIVVSGG STMATGFEKRLQKEMELLVSNPQVQIKINAPPNRDISVWCGGSVLGDLKTFSDQWITKQE YDEVGRGIVHRKCF*inkiinnilk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHF491 (CHF491Q) /CSM/CH/CHF4-D/CHF491Q.Seq.d/ 2579 0.0 AHM227 (AHM227Q) /CSM/AH/AHM2-B/AHM227Q.Seq.d/ 1453 0.0 VHC732 (VHC732Q) /CSM/VH/VHC7-B/VHC732Q.Seq.d/ 1429 0.0 VHB304 (VHB304Q) /CSM/VH/VHB3-A/VHB304Q.Seq.d/ 1429 0.0 AHL385 (AHL385Q) /CSM/AH/AHL3-D/AHL385Q.Seq.d/ 1427 0.0 AHF512 (AHF512Q) /CSM/AH/AHF5-A/AHF512Q.Seq.d/ 1427 0.0 CHH533 (CHH533Q) /CSM/CH/CHH5-B/CHH533Q.Seq.d/ 1415 0.0 VHA813 (VHA813Q) /CSM/VH/VHA8-A/VHA813Q.Seq.d/ 1411 0.0 VHD820 (VHD820Q) /CSM/VH/VHD8-A/VHD820Q.Seq.d/ 1380 0.0 SHC311 (SHC311Q) /CSM/SH/SHC3-A/SHC311Q.Seq.d/ 1372 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF234970\|AF234970.1 Argonauta nodosa actin gene, partial cds. 101 5e-24 3 AJ269586\|AJ269586.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-14. 68 8e-21 3 AJ269585\|AJ269585.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-7. 68 8e-21 3 AJ269584\|AJ269584.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-6. 68 8e-21 3 AJ269583\|AJ269583.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-3. 68 8e-21 3 AJ269581\|AJ269581.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-18. 68 8e-21 3 AJ269580\|AJ269580.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-13. 68 8e-21 3 AJ269579\|AJ269579.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-9. 68 8e-21 3 AJ269578\|AJ269578.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-11. 68 8e-21 3 AY120930\|AY120930.1 Cryptosporidium sp. 938 actin gene, partial cds. 74 1e-20 2
dna update	2004. 9.28
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AM411663_1(AM411663\|pid:none) Plasmodiophora brassicae actII gen... 312 2e-83 (P18600) RecName: Full=Actin, clone 205; &S11450(S11450) &X5260... 311 5e-83 (P53458) RecName: Full=Actin-5; Flags: Fragment; &U27836_1(U278... 311 5e-83 (O17320) RecName: Full=Actin; &AF026063_1(AF026063\|pid:none) 310 6e-83 (P11426) RecName: Full=Actin; &ATAXE(A29877;A54526;S33463) &M16... 310 6e-83 (P45886) RecName: Full=Actin-3, muscle-specific; &L12255_1(L122... 310 6e-83 AB036756_1(AB036756\|pid:none) Pagrus major mRNA for B-actin, com... 310 8e-83 AY294156_1(AY294156\|pid:none) Pelomyxa palustris actin mRNA, com... 310 8e-83 AB086826_1(AB086826\|pid:none) Galaxea fascicularis LGfact mRNA f... 310 8e-83 AY305013_1(AY305013\|pid:none) Gromia oviformis actin mRNA, parti... 310 8e-83
protein update	2009. 3.31
PSORT	psg: 0.87 gvh: 0.48 alm: 0.26 top: 0.63 tms: 0.07 mit: 0.33 mip: 0.05 nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.08 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 28.0 %: cytoplasmic 24.0 %: mitochondrial 24.0 %: nuclear 8.0 %: plasma membrane 8.0 %: endoplasmic reticulum 4.0 %: vesicles of secretory system 4.0 %: peroxisomal >> prediction for CHF491 is cyt
5' end seq. ID	CHF491F
5' end seq.	>CHF491F.Seq AATAAACTACAAATTTGGATGTTAAATTAATTATAATTTGTTAATATAACATTTTGTATA TATATATATATAAAAAATAAAAAACTCAAATGACAGGATTTTCAATTCCTAATATGAGTA TGTTACTCAAATTAGCAAATAGTAGATTGGTATTACATAAAAATAAAAATTTTGAACAAA GTAATGTTCATAAAAAAGAGATTGCAGAATTATTACAATTAGGTAAAGAAGAACAAGCAA GAGTTAGAACGGTTTCAGTTATTAATGAAGATTATCACACTGAAGTTTTAGGTATTTTAA TTATTTATTGTGAAACTTTAGCAAATAGAATTAGAGGAATTGAAGGTGTAAAGGTATGCC CACCAGATTTAAAAGAAGCATGTTGTAGTATTATATTTGCATCACCATATTTAGATAAAC AAGTTGAATTATATAAGATTAGAAAGAGATTAATTGAAAAATTTGGTAAAAAATTCCCAG AGGAATGTATAGATTGTTGTTGTATCAATCCAAAGATTGTACATAGATTATCAAATAAAC CACCTGAAGAATCATTGGTAAACTATTATCTTAGTAATATTGCAAAGAAACATAATGTAG CCTGGGATACTCCAGCATTACCACCTTTAGTTGATTTACAACAAAGTATTCCTGATTTCA NNNNNNNNNN
Length of 5' end seq.	670
3' end seq. ID	CHF491Z
3' end seq.	>CHF491Z.Seq NNNNNNNNNNTGAATATTTCAATACTCCTGCCAGTTTATATAGCAATTCAAGCCGTTCTC TCTTTGTATGCATCTGGTCGTACCACTGGTACCGTATTGGATTGTGGTGATGGTGTTTGT CATACCGTGCCAATCTATGAAGGTTATTCTATTCCACATGCAATTAAAAGAATCGATATC GGTGGTCGTGATATCACAGAGTATTTAATGCGTTTACTCACTGAAAGAGGTTATGCTTTC ACTACAACCGCCGAAAGAGAAATCGTACGTGATATCAAAGAGAAAACTTCATTTGTCTCT CAAGATTTCTATGCCTCTATGAATGCTCCAGAGGATAATAATATACTCAAGGATTATACG ATGCCCGATAAACAAGTTTTAACCATTGATAAAGAAAGATTCCGTTGTTATGAAGCTTTC TTTGACCCTTCAGTACTAGGTAAAGATCAAAATGGTATTCATCACCTCTTAAATGAAACT ATCACCTCTTGTGATATTGATATTCGTCGTGATCTCTATAAAAATATTGTAGTTTCTGGT GGTTCAACAATGGCAACAGGTTTTGAAAAACGTTTACAAAAAGAAATGGAACTTTTAGTT TCAAATCCTCAAGTCCAAATTAAAATTAATGCACCACCAAATCGTGATATTAGTGTTTGG TGTGGTGGTTCGGTTTTAGGTGATCTTAAAACTTTTTCGGATCAATGGATTACAAAACAA GAATATGATGAAGTTGGTAGAGGAATTGTTCATAGAAAATGTTTTTAAATAAATAAAATA ATAAATAATATTTTAAAATA
Length of 3' end seq.	800
Connected seq. ID	CHF491P
Connected seq.	>CHF491P.Seq AATAAACTACAAATTTGGATGTTAAATTAATTATAATTTGTTAATATAACATTTTGTATA TATATATATATAAAAAATAAAAAACTCAAATGACAGGATTTTCAATTCCTAATATGAGTA TGTTACTCAAATTAGCAAATAGTAGATTGGTATTACATAAAAATAAAAATTTTGAACAAA GTAATGTTCATAAAAAAGAGATTGCAGAATTATTACAATTAGGTAAAGAAGAACAAGCAA GAGTTAGAACGGTTTCAGTTATTAATGAAGATTATCACACTGAAGTTTTAGGTATTTTAA TTATTTATTGTGAAACTTTAGCAAATAGAATTAGAGGAATTGAAGGTGTAAAGGTATGCC CACCAGATTTAAAAGAAGCATGTTGTAGTATTATATTTGCATCACCATATTTAGATAAAC AAGTTGAATTATATAAGATTAGAAAGAGATTAATTGAAAAATTTGGTAAAAAATTCCCAG AGGAATGTATAGATTGTTGTTGTATCAATCCAAAGATTGTACATAGATTATCAAATAAAC CACCTGAAGAATCATTGGTAAACTATTATCTTAGTAATATTGCAAAGAAACATAATGTAG CCTGGGATACTCCAGCATTACCACCTTTAGTTGATTTACAACAAAGTATTCCTGATTTCA ----------TGAATATTTCAATACTCCTGCCAGTTTATATAGCAATTCAAGCCGTTCTC TCTTTGTATGCATCTGGTCGTACCACTGGTACCGTATTGGATTGTGGTGATGGTGTTTGT CATACCGTGCCAATCTATGAAGGTTATTCTATTCCACATGCAATTAAAAGAATCGATATC GGTGGTCGTGATATCACAGAGTATTTAATGCGTTTACTCACTGAAAGAGGTTATGCTTTC ACTACAACCGCCGAAAGAGAAATCGTACGTGATATCAAAGAGAAAACTTCATTTGTCTCT CAAGATTTCTATGCCTCTATGAATGCTCCAGAGGATAATAATATACTCAAGGATTATACG ATGCCCGATAAACAAGTTTTAACCATTGATAAAGAAAGATTCCGTTGTTATGAAGCTTTC TTTGACCCTTCAGTACTAGGTAAAGATCAAAATGGTATTCATCACCTCTTAAATGAAACT ATCACCTCTTGTGATATTGATATTCGTCGTGATCTCTATAAAAATATTGTAGTTTCTGGT GGTTCAACAATGGCAACAGGTTTTGAAAAACGTTTACAAAAAGAAATGGAACTTTTAGTT TCAAATCCTCAAGTCCAAATTAAAATTAATGCACCACCAAATCGTGATATTAGTGTTTGG TGTGGTGGTTCGGTTTTAGGTGATCTTAAAACTTTTTCGGATCAATGGATTACAAAACAA GAATATGATGAAGTTGGTAGAGGAATTGTTCATAGAAAATGTTTTTAAATAAATAAAATA ATAAATAATATTTTAAAATA
Length of connected seq.	1450
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas