CHF489
Library CH
(Link to library)
Clone ID CHF489
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16430-1
Original site URL
Representative seq. ID CHF489P
(Link to Original site)
Representative DNA sequence
>CHF489 (CHF489Q) /CSM/CH/CHF4-D/CHF489Q.Seq.d/
CTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAGAACATAAAAAAATGGC
TGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATCAGCTTATGTCCCTTAT
TATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAATTGATTTCAAATGCATC
TGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCATCAGTTTTGGAATCAAA
AACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAACTCTTACACTCATTGA
TAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAGGTACTATTGCTCGTTC
AGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTGATATCAGTATGATTGG
TCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGATACTGTTATTGTTCACTC
TAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTGGTGGTGAATTTACCAT
TGCTCTCGATCATACCGAACCATTAGXXXXXXXXXXCTATATCACTGGTGAATCTAAAAA
AGCTGTTGAAAACTCTCCATTCATTGAAGGTCTCAAGAAGAAGAATCTTGAAGTCATTTA
CATGTGTGACCCAATTGATGAATATGCTGTTCAACAATTAAAAGAATATGACGGTAAGAA
ATTAGTATCAATTACCAAAGAAGGTTTGAAATTAGATGAAACCGAAGATGAAAAGAAAAA
AGCTGAACAAGATAAAGCTGCCAATGAAGAATTACTCAAACAAGTTAAAGATGTATTGGG
TGATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTCTTGCCAACTCACCATGTGTTTTAGT
TACCTCTGAATATGGTTGGTCAGCAAACATGGAACGTATCATGAAAGCTCAAGCTCTCCG
TGACTCTTCAATGTCATCATACATGTCATCAAAGAAAACTTTAGAATTAAATCCAGATCA
CCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAGTAAAACTTTCAAAGACTT
TGTTTACTTATTATATGAAACTGCTCTCTTAACTTCAGGTTTCTCATTAGATGAACCATC
ATCATTTGCTTCACGTATTCATCGTATGATTAAATTAGGTTTAAGCATTCAAGATGATTC
ATCAGCAACAACTGAAGAATCAACAAACACAACAACCAGTGATGATATTCCACCATTAGA
AGAAAACGATGAACCATCTGAAATGGAAAAAGTCGACTAGATTTAATTACTAGCCCTTTG
CTATCAATTTTTG
sequence update 2002.10.25
Translated Amino Acid sequence
yilihn*FYLFFFVEHKKMAESQVERFTFQAEINQLMSLIINTFYSNKEVFLRELISNAS
DALDKIRYQSLTDASVLESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNLGTIARS
GTKNFMEQLQSGAADISMIGQFGVGFYSAYLVADTVIVHSKNNDDEQYVWESSAGGEFTI
ALDHTEPL---

---YITGESKKAVENSPFIEGLKKKNLEVIYMCDPIDEYAVQQLKEYDGKKLVSITKEGL
KLDETEDEKKKAEQDKAANEELLKQVKDVLGDKVEKVVLSTRLANSPCVLVTSEYGWSAN
MERIMKAQALRDSSMSSYMSSKKTLELNPDHPIVRDLAKKAAEKSKTFKDFVYLLYETAL
LTSGFSLDEPSSFASRIHRMIKLGLSIQDDSSATTEESTNTTTSDDIPPLEENDEPSEME
KVD*i*llalcyqfl


Translated Amino Acid sequence (All Frames)
Frame A:
lysns*lilfvffcrt*kng*its*tfhips*n*sayvpyy*yflfk*rsifkridfkci
*clr*nslpiin*cisfgikn*trn*nysr*dcqnsyth**wywydqnrygkefryycsf
ry*klygtitkwcr*yqydwsiwcwfllcllscrycycsl*kq***tirlgikcww*iyh
csrsyrti---

---lyhw*i*ksc*klsih*rsqeees*shlhv*pn**iccstikri*r*eisinyqrrf
eir*nrr*keks*tr*scq*ritqts*rcig**s*kgsslnsscqltmcfsyl*iwlvsk
hgtyhessssp*lfnviihvikenfriksrspnr*rfsqksrrkk*nfqrlcllii*ncs
lnfrflir*tiiicftyssyd*irfkhsr*fisnn*rinkhnnq**ystirrkr*ti*ng
ksrldlitspllsif

Frame B:
yilihn*FYLFFFVEHKKMAESQVERFTFQAEINQLMSLIINTFYSNKEVFLRELISNAS
DALDKIRYQSLTDASVLESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNLGTIARS
GTKNFMEQLQSGAADISMIGQFGVGFYSAYLVADTVIVHSKNNDDEQYVWESSAGGEFTI
ALDHTEPL---

---YITGESKKAVENSPFIEGLKKKNLEVIYMCDPIDEYAVQQLKEYDGKKLVSITKEGL
KLDETEDEKKKAEQDKAANEELLKQVKDVLGDKVEKVVLSTRLANSPCVLVTSEYGWSAN
MERIMKAQALRDSSMSSYMSSKKTLELNPDHPIVRDLAKKAAEKSKTFKDFVYLLYETAL
LTSGFSLDEPSSFASRIHRMIKLGLSIQDDSSATTEESTNTTTSDDIPPLEENDEPSEME
KVD*i*llalcyqfl

Frame C:
if*fiinficffl*nikkwlnhklnvshsklklislcplllilfiqikkyf*en*fqmhl
mp*ikfvtnh*lmhqfwnqklnsklklfqirlpkllhslivvlv*pkpiw*ri*vlllvq
vlktlwnnykvvplisv*lvnlvlvstllt*lpilllftlktmmmnntfgnqvlvvnlpl
lsiipnh*---

---islvnlkkllktlhslkvsrrrilksftcvtqlmnmlfnn*knmtvrn*yqlpkkv*
n*mkpkmkrkklnkiklpmknysnklkmywviklkr*fsqlvlpthhvf*lplnmvgqqt
wnvs*klklsvtlqchhtchqrkl*n*iqitqslei*pkkppkkvklsktlftyymklls
*lqvsh*mnhhhllhvfiv*ln*v*afkmihqqqlknqqtqqpvmifhh*kktmnhlkwk
kstrfny*pfainf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP202 (VHP202Q) /CSM/VH/VHP2-A/VHP202Q.Seq.d/ 1027 0.0
VHK153 (VHK153Q) /CSM/VH/VHK1-C/VHK153Q.Seq.d/ 1027 0.0
VHJ821 (VHJ821Q) /CSM/VH/VHJ8-A/VHJ821Q.Seq.d/ 1027 0.0
VHI607 (VHI607Q) /CSM/VH/VHI6-A/VHI607Q.Seq.d/ 1027 0.0
VHH735 (VHH735Q) /CSM/VH/VHH7-B/VHH735Q.Seq.d/ 1027 0.0
VHH731 (VHH731Q) /CSM/VH/VHH7-B/VHH731Q.Seq.d/ 1027 0.0
VHH708 (VHH708Q) /CSM/VH/VHH7-A/VHH708Q.Seq.d/ 1027 0.0
VHH593 (VHH593Q) /CSM/VH/VHH5-D/VHH593Q.Seq.d/ 1027 0.0
VHH272 (VHH272Q) /CSM/VH/VHH2-C/VHH272Q.Seq.d/ 1027 0.0
VHF303 (VHF303Q) /CSM/VH/VHF3-A/VHF303Q.Seq.d/ 1027 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L43591|L43591.1 Dictyostelium discoideum (clone C 6.1.1) heat shock cognate protein (hsc90) mRNA, complete cds. 1011 0.0 2
L34027|L34027.1 Plasmodium falciparum (clone Dd2) heat shock protein 86 gene, complete cds. 98 1e-53 9
L34028|L34028.1 Plasmodium falciparum (clone HB3) heat shock protein 86 gene, complete cds. 98 1e-53 8
Z29667|Z29667.1 P.falciparum (7) mRNA for heat-shock protein. 98 1e-51 8
AY122634|AY122634.1 Naegleria gruberi strain ATCC 30224 heat shock protein 90 (HSP-90) gene, partial cds. 86 2e-51 8
AF030694|AF030694.2 Plasmodium falciparum strain Dd2 heat shock protein 86 (HSP86), O1 (o1), O3 (o3), O2 (o2), CG8 (cg8), CG4 (cg4), CG3 (cg3), putative chloroquine resistance transporter (crt), CG9 (cg9), CG1 (cg1), CG6 (cg6), CG2 (cg2), and CG7 (cg7) genes, complete cds. 98 3e-47 10
AF249998|AF249998.1 Habrotrocha constricta 82 kDa heat shock protein 2 (hsp82-2) gene, partial cds. 88 8e-47 4
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence. 80 2e-45 13
AY423866|AY423866.1 Cryptosporidium parvum heat shock protein 90 gene, partial cds. 74 3e-44 9
AF402101|AF402101.1 Achlya ambisexualis isolate JS855 heat shock protein Hsp90 mRNA, complete cds. 88 8e-44 6
dna update 2004. 9.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54651) RecName: Full=Heat shock cognate 90 kDa protein; 353 7e-96
L43591_1(L43591|pid:none) Dictyostelium discoideum (clone C 6.1.... 353 7e-96
AB300196_1(AB300196|pid:none) Physarum polycephalum hsp90 mRNA f... 261 4e-68
AF006543_1(AF006543|pid:none) Drosophila pseudoobscura bogotana ... 257 5e-67
(P04810) RecName: Full=Heat shock protein 83; AltName: Full=HSP ... 257 7e-67
U57467_1(U57467|pid:none) Drosophila melanogaster heat shock pro... 257 7e-67
U57459_1(U57459|pid:none) Drosophila melanogaster heat shock pro... 257 7e-67
(P04811) RecName: Full=Heat shock protein 83; AltName: Full=HSP ... 256 9e-67
(O02192) RecName: Full=Heat shock protein 83; AltName: Full=HSP ... 256 9e-67
C24827(C24827) heat shock 82K protein - fruit fly (Drosophila ps... 256 9e-67
protein update 2009. 3.31
PSORT

psg: 0.50 gvh: 0.46 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
24.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CHF489 is cyt

5' end seq. ID CHF489F
5' end seq.
>CHF489F.Seq
CTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAGAACATAAAAAAATGGC
TGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATCAGCTTATGTCCCTTAT
TATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAATTGATTTCAAATGCATC
TGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCATCAGTTTTGGAATCAAA
AACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAACTCTTACACTCATTGA
TAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAGGTACTATTGCTCGTTC
AGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTGATATCAGTATGATTGG
TCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGATACTGTTATTGTTCACTC
TAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTGGTGGTGAATTTACCAT
TGCTCTCGATCATACCGAACCATTAGNNNNNNNNNN
Length of 5' end seq. 576
3' end seq. ID CHF489Z
3' end seq.
>CHF489Z.Seq
NNNNNNNNNNCTATATCACTGGTGAATCTAAAAAAGCTGTTGAAAACTCTCCATTCATTG
AAGGTCTCAAGAAGAAGAATCTTGAAGTCATTTACATGTGTGACCCAATTGATGAATATG
CTGTTCAACAATTAAAAGAATATGACGGTAAGAAATTAGTATCAATTACCAAAGAAGGTT
TGAAATTAGATGAAACCGAAGATGAAAAGAAAAAAGCTGAACAAGATAAAGCTGCCAATG
AAGAATTACTCAAACAAGTTAAAGATGTATTGGGTGATAAAGTTGAAAAGGTAGTTCTCT
CAACTCGTCTTGCCAACTCACCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAA
ACATGGAACGTATCATGAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGT
CATCAAAGAAAACTTTAGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAA
AAGCCGCCGAAAAAAGTAAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTGCTC
TCTTAACTTCAGGTTTCTCATTAGATGAACCATCATCATTTGCTTCACGTATTCATCGTA
TGATTAAATTAGGTTTAAGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCAACAA
ACACAACAACCAGTGATGATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAATGG
AAAAAGTCGACTAGATTTAATTACTAGCCCTTTGCTATCAATTTTTG
Length of 3' end seq. 767
Connected seq. ID CHF489P
Connected seq.
>CHF489P.Seq
CTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAGAACATAAAAAAATGGC
TGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATCAGCTTATGTCCCTTAT
TATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAATTGATTTCAAATGCATC
TGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCATCAGTTTTGGAATCAAA
AACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAACTCTTACACTCATTGA
TAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAGGTACTATTGCTCGTTC
AGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTGATATCAGTATGATTGG
TCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGATACTGTTATTGTTCACTC
TAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTGGTGGTGAATTTACCAT
TGCTCTCGATCATACCGAACCATTAG----------CTATATCACTGGTGAATCTAAAAA
AGCTGTTGAAAACTCTCCATTCATTGAAGGTCTCAAGAAGAAGAATCTTGAAGTCATTTA
CATGTGTGACCCAATTGATGAATATGCTGTTCAACAATTAAAAGAATATGACGGTAAGAA
ATTAGTATCAATTACCAAAGAAGGTTTGAAATTAGATGAAACCGAAGATGAAAAGAAAAA
AGCTGAACAAGATAAAGCTGCCAATGAAGAATTACTCAAACAAGTTAAAGATGTATTGGG
TGATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTCTTGCCAACTCACCATGTGTTTTAGT
TACCTCTGAATATGGTTGGTCAGCAAACATGGAACGTATCATGAAAGCTCAAGCTCTCCG
TGACTCTTCAATGTCATCATACATGTCATCAAAGAAAACTTTAGAATTAAATCCAGATCA
CCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAGTAAAACTTTCAAAGACTT
TGTTTACTTATTATATGAAACTGCTCTCTTAACTTCAGGTTTCTCATTAGATGAACCATC
ATCATTTGCTTCACGTATTCATCGTATGATTAAATTAGGTTTAAGCATTCAAGATGATTC
ATCAGCAACAACTGAAGAATCAACAAACACAACAACCAGTGATGATATTCCACCATTAGA
AGAAAACGATGAACCATCTGAAATGGAAAAAGTCGACTAGATTTAATTACTAGCCCTTTG
CTATCAATTTTTG
Length of connected seq. 1323
Full length Seq ID -
Full length Seq. -
Length of full length seq. -