CHF484 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHF484
Library	CH (Link to library)
Clone ID	CHF484 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11429-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHF4-D/CHF484Q.Seq.d/
Representative seq. ID	CHF484P (Link to Original site)
Representative DNA sequence	>CHF484 (CHF484Q) /CSM/CH/CHF4-D/CHF484Q.Seq.d/ GTGCAGCATCTCAATCAAAATCAAGTGCAAAAGTTGGAATGCCAAAACAACAAGCATCTG GTGCAAATTATGTTGGTGAAGATTTATATAACCGATTAAATTTATTTTTAAAAAAGCATA TGTCACAATTATTAAAACTCACAGAAACAAAGATGGATGAACCATTATTAAATTATTACT ATACAGAATGGGATCGTTATACATCTGCAATGAAATATATTAATAACATTTTTCAATATA TGAATAGATATTGGATTAAAAGAGAAATTGATGATGGTAAAAAAGAAGTTTATGAAATAT TTATTTTATCATTAGTAATTTGGAGAGATTGTTTATTTACACCATTAAAACAACGTTTAA CAAATTCATTATTGGATATAATTGAAAGTGAAAGAAATGGTTATCAAATTAATACACATT TAATTAAAGGTGTTATAAATGGTTATGTTAGTTTAGGATTAAATAGAGAGAAACCAAAGG AAACAATTTTACAAGTATATAAATCTGGTTTTGAAGAATTATTTTTAACAGCAACTGAAA ATTATTATACAAATGAATCTGCTAAATTCATCTCTGAAAATAGTGTAGCTGATTATATGA AAAAAGTTGAAACTAGAXXXXXXXXXXAGTTATTGGATCGTTTCCAATAATCATATTGAA CAAGTGGAGAGATCATCATTGAATATTGATTTCAGTGTATTGGTGCTAGCAACCGGCTCA TGGCCATTGCAACCACCGTCCACCAATTTCTCAATACCAAAGGAGCTTCAAGCCTGTGAG CAATTGTTTCAAAAGTTTTACCAAAATCAACATTCTGGTCGTAAATTGAATTGGTTACAT CATTTATCAAAGGGTGAATTGAAAACTAAATATTTACAAACTAGTAAGAGTGGTTATACT TTACAATGTTCAACCTATCAAATTGGTGTACTCTTACAATTCAATCAATATGAAACTCTC ACCTCTGAAGAGATTCAAGAGAGCACCCAATTGATTGATTCCGTTCTTAAGGGTACTTTA ACCTCTTTGGCAAAATCAAAGATTCTCTTGGCTGATCCACCTCTCGATGATGAAGAGATC GCTAAAACCACAAAATTCTCTTTGAATAAACAATTTAAAAATAAAAAAACAAAGATTTTC ATCAATGTTCCAGTGTTAACTCAAGTCAAAGAAGAAATTGATTCAATCCATAAAACTGTC GAAGAGGATAGAAAACTTCAAATTCAAGCTGCCATCGTTAGAATCATGAAAATGAGAAAA CAATTGGCTCATTCTGGTTTAATGACTGAAGTAATCTCTCAACTTCAAACTCGTTTCAAT CCAAAAGTTAATATCATTAAAAAATGTATTGATATTTTAATNAAAAAGAATATTTAA
sequence update	2002.10.25
Translated Amino Acid sequence	AASQSKSSAKVGMPKQQASGANYVGEDLYNRLNLFLKKHMSQLLKLTETKMDEPLLNYYY TEWDRYTSAMKYINNIFQYMNRYWIKREIDDGKKEVYEIFILSLVIWRDCLFTPLKQRLT NSLLDIIESERNGYQINTHLIKGVINGYVSLGLNREKPKETILQVYKSGFEELFLTATEN YYTNESAKFISENSVADYMKKVETR--- ---SYWIVSNNHIEQVERSSLNIDFSVLVLATGSWPLQPPSTNFSIPKELQACEQLFQKF YQNQHSGRKLNWLHHLSKGELKTKYLQTSKSGYTLQCSTYQIGVLLQFNQYETLTSEEIQ ESTQLIDSVLKGTLTSLAKSKILLADPPLDDEEIAKTTKFSLNKQFKNKKTKIFINVPVL TQVKEEIDSIHKTVEEDRKLQIQAAIVRIMKMRKQLAHSGLMTEVISQLQTRFNPKVNII KKCIDILXKKNI*
Translated Amino Acid sequence (All Frames)	Frame A: vqhlnqnqvqklecqnnkhlvqimlvkiyitdiyfksichnynsqkqrwmnhyiit iqngivihlqnilitffniidiglkeklmmvkkkfmkylfyh*fgeivylhhnnv* qihywilkvkemviklihilkvlmvmlvdiernqrkqfykyinlvlknyfqqlk iiiqmnllnsslkivliikklkl--- ---SYWIVSNNHIEQVERSSLNIDFSVLVLATGSWPLQPPSTNFSIPKELQACEQLFQKF YQNQHSGRKLNWLHHLSKGELKTKYLQTSKSGYTLQCSTYQIGVLLQFNQYETLTSEEIQ ESTQLIDSVLKGTLTSLAKSKILLADPPLDDEEIAKTTKFSLNKQFKNKKTKIFINVPVL TQVKEEIDSIHKTVEEDRKLQIQAAIVRIMKMRKQLAHSGLMTEVISQLQTRFNPKVNII KKCIDILXKKNI* Frame B: csisikikckswnakttsiwcklcwrfipikfifkkayvtiikthrnkdgtiiklll yrmgslyicneiyhfsiyeildkrnwkrslniyfiisnlerlfiytikttfn kfiigynkkkwlsnytfnrcykwlcfrikretkgnnftsiiwfriifnsnk llykicihlkcslyeksn--- ---vigsfpiiilnkwrdhhilisvywcqpahghcnhrppisqyqrsfkpvsncfksf tkinilvvnigyiiyqrvnklniyklvrvvilynvqpiklvysynsinmklsplkrfk rapnlipflrvlplwqnqrfswlihlsmmkrslkpqnslinnlkikkqrfssmfqc* lkskkkliqsiklskrienfkfklpsleskennwlilv*lkslnfklvsiqklisl knvlifxkrif Frame C: AASQSKSSAKVGMPKQQASGANYVGEDLYNRLNLFLKKHMSQLLKLTETKMDEPLLNYYY TEWDRYTSAMKYINNIFQYMNRYWIKREIDDGKKEVYEIFILSLVIWRDCLFTPLKQRLT NSLLDIIESERNGYQINTHLIKGVINGYVSLGLNREKPKETILQVYKSGFEELFLTATEN YYTNESAKFISENSVADYMKKVETR--- ---lldrfqsytsgeiiieyfqcigasnrlmaiattvhqflntkgasslaivskvl pkstfwsielvtsfikgieniftn*ewlyftmfnlsnwctltiqsinshlrdsr ehpidfrsgyfnlfgkikdslgstsr*rdrnhkilfetikknkdfhqcssvn ssqrrnfnpncrrgktsnsschrnhenektigsfwfndsnlstsnsfqsksyh kmy*yfnxkeyl
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHF484 (CHF484Q) /CSM/CH/CHF4-D/CHF484Q.Seq.d/ 2153 0.0 CHE552 (CHE552Q) /CSM/CH/CHE5-C/CHE552Q.Seq.d/ 1217 0.0 CHE681 (CHE681Q) /CSM/CH/CHE6-D/CHE681Q.Seq.d/ 940 0.0 CHK727 (CHK727Q) /CSM/CH/CHK7-B/CHK727Q.Seq.d/ 936 0.0 SFF550 (SFF550Q) /CSM/SF/SFF5-C/SFF550Q.Seq.d/ 928 0.0 SHJ571 (SHJ571Q) /CSM/SH/SHJ5-C/SHJ571Q.Seq.d/ 894 0.0 VHG417 (VHG417Q) /CSM/VH/VHG4-A/VHG417Q.Seq.d/ 844 0.0 CHL540 (CHL540Q) /CSM/CH/CHL5-B/CHL540Q.Seq.d/ 793 0.0 AFK844 (AFK844Q) /CSM/AF/AFK8-B/AFK844Q.Seq.d/ 781 0.0 CHA135 (CHA135Q) /CSM/CH/CHA1-B/CHA135Q.Seq.d/ 735 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF020287\|AF020287.1 Dictyostelium discoideum CulA (culA) mRNA, complete cds. 1223 0.0 4 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 2e-11 27 AE017263\|AE017263.1 Mesoplasma florum L1 complete genome. 34 4e-09 31 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 40 5e-09 30 AC116979\|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 38 1e-08 19 AC115598\|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 32 1e-07 16 AL929356\|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5. 34 3e-07 19 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 38 3e-07 23 AF063866\|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 34 4e-07 19 AC116963\|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 34 5e-07 17
dna update	2004. 9.28
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (O60999) RecName: Full=Cullin-1; Short=CUL-1; AltName: ... 451 e-125 AM270168_143(AM270168\|pid:none) Aspergillus niger contig An08c01... 204 7e-51 AF136441_1(AF136441\|pid:none) Mus musculus cullin 1 (Cul1) mRNA,... 200 8e-50 CR860407_1(CR860407\|pid:none) Pongo abelii mRNA; cDNA DKFZp459H0... 200 1e-49 (Q13616) RecName: Full=Cullin-1; Short=CUL-1; &(Q5R4G6... 200 1e-49 BC004836_1(BC004836\|pid:none) Mus musculus cullin 1, mRNA (cDNA ... 200 1e-49 BC097675_1(BC097675\|pid:none) Xenopus laevis hypothetical protei... 200 1e-49 AK096163_1(AK096163\|pid:none) Homo sapiens cDNA FLJ38844 fis, cl... 200 1e-49 AK164274_1(AK164274\|pid:none) Mus musculus 9 days embryo whole b... 200 1e-49 DQ466084_1(DQ466084\|pid:none) Xenopus tropicalis cullin-1 mRNA, ... 200 1e-49
protein update	2009. 3.31
PSORT	psg: 0.67 gvh: 0.32 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00 nuc: 0.06 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: nuclear 20.0 %: mitochondrial 20.0 %: cytoplasmic 4.0 %: cytoskeletal >> prediction for CHF484 is nuc
5' end seq. ID	CHF484F
5' end seq.	>CHF484F.Seq GTGCAGCATCTCAATCAAAATCAAGTGCAAAAGTTGGAATGCCAAAACAACAAGCATCTG GTGCAAATTATGTTGGTGAAGATTTATATAACCGATTAAATTTATTTTTAAAAAAGCATA TGTCACAATTATTAAAACTCACAGAAACAAAGATGGATGAACCATTATTAAATTATTACT ATACAGAATGGGATCGTTATACATCTGCAATGAAATATATTAATAACATTTTTCAATATA TGAATAGATATTGGATTAAAAGAGAAATTGATGATGGTAAAAAAGAAGTTTATGAAATAT TTATTTTATCATTAGTAATTTGGAGAGATTGTTTATTTACACCATTAAAACAACGTTTAA CAAATTCATTATTGGATATAATTGAAAGTGAAAGAAATGGTTATCAAATTAATACACATT TAATTAAAGGTGTTATAAATGGTTATGTTAGTTTAGGATTAAATAGAGAGAAACCAAAGG AAACAATTTTACAAGTATATAAATCTGGTTTTGAAGAATTATTTTTAACAGCAACTGAAA ATTATTATACAAATGAATCTGCTAAATTCATCTCTGAAAATAGTGTAGCTGATTATATGA AAAAAGTTGAAACTAGANNNNNNNNNN
Length of 5' end seq.	627
3' end seq. ID	CHF484Z
3' end seq.	>CHF484Z.Seq NNNNNNNNNNAGTTATTGGATCGTTTCCAATAATCATATTGAACAAGTGGAGAGATCATC ATTGAATATTGATTTCAGTGTATTGGTGCTAGCAACCGGCTCATGGCCATTGCAACCACC GTCCACCAATTTCTCAATACCAAAGGAGCTTCAAGCCTGTGAGCAATTGTTTCAAAAGTT TTACCAAAATCAACATTCTGGTCGTAAATTGAATTGGTTACATCATTTATCAAAGGGTGA ATTGAAAACTAAATATTTACAAACTAGTAAGAGTGGTTATACTTTACAATGTTCAACCTA TCAAATTGGTGTACTCTTACAATTCAATCAATATGAAACTCTCACCTCTGAAGAGATTCA AGAGAGCACCCAATTGATTGATTCCGTTCTTAAGGGTACTTTAACCTCTTTGGCAAAATC AAAGATTCTCTTGGCTGATCCACCTCTCGATGATGAAGAGATCGCTAAAACCACAAAATT CTCTTTGAATAAACAATTTAAAAATAAAAAAACAAAGATTTTCATCAATGTTCCAGTGTT AACTCAAGTCAAAGAAGAAATTGATTCAATCCATAAAACTGTCGAAGAGGATAGAAAACT TCAAATTCAAGCTGCCATCGTTAGAATCATGAAAATGAGAAAACAATTGGCTCATTCTGG TTTAATGACTGAAGTAATCTCTCAACTTCAAACTCGTTTCAATCCAAAAGTTAATATCAT TAAAAAATGTATTGATATTTTAATNAAAAAGAATATTTAA
Length of 3' end seq.	760
Connected seq. ID	CHF484P
Connected seq.	>CHF484P.Seq GTGCAGCATCTCAATCAAAATCAAGTGCAAAAGTTGGAATGCCAAAACAACAAGCATCTG GTGCAAATTATGTTGGTGAAGATTTATATAACCGATTAAATTTATTTTTAAAAAAGCATA TGTCACAATTATTAAAACTCACAGAAACAAAGATGGATGAACCATTATTAAATTATTACT ATACAGAATGGGATCGTTATACATCTGCAATGAAATATATTAATAACATTTTTCAATATA TGAATAGATATTGGATTAAAAGAGAAATTGATGATGGTAAAAAAGAAGTTTATGAAATAT TTATTTTATCATTAGTAATTTGGAGAGATTGTTTATTTACACCATTAAAACAACGTTTAA CAAATTCATTATTGGATATAATTGAAAGTGAAAGAAATGGTTATCAAATTAATACACATT TAATTAAAGGTGTTATAAATGGTTATGTTAGTTTAGGATTAAATAGAGAGAAACCAAAGG AAACAATTTTACAAGTATATAAATCTGGTTTTGAAGAATTATTTTTAACAGCAACTGAAA ATTATTATACAAATGAATCTGCTAAATTCATCTCTGAAAATAGTGTAGCTGATTATATGA AAAAAGTTGAAACTAGA----------AGTTATTGGATCGTTTCCAATAATCATATTGAA CAAGTGGAGAGATCATCATTGAATATTGATTTCAGTGTATTGGTGCTAGCAACCGGCTCA TGGCCATTGCAACCACCGTCCACCAATTTCTCAATACCAAAGGAGCTTCAAGCCTGTGAG CAATTGTTTCAAAAGTTTTACCAAAATCAACATTCTGGTCGTAAATTGAATTGGTTACAT CATTTATCAAAGGGTGAATTGAAAACTAAATATTTACAAACTAGTAAGAGTGGTTATACT TTACAATGTTCAACCTATCAAATTGGTGTACTCTTACAATTCAATCAATATGAAACTCTC ACCTCTGAAGAGATTCAAGAGAGCACCCAATTGATTGATTCCGTTCTTAAGGGTACTTTA ACCTCTTTGGCAAAATCAAAGATTCTCTTGGCTGATCCACCTCTCGATGATGAAGAGATC GCTAAAACCACAAAATTCTCTTTGAATAAACAATTTAAAAATAAAAAAACAAAGATTTTC ATCAATGTTCCAGTGTTAACTCAAGTCAAAGAAGAAATTGATTCAATCCATAAAACTGTC GAAGAGGATAGAAAACTTCAAATTCAAGCTGCCATCGTTAGAATCATGAAAATGAGAAAA CAATTGGCTCATTCTGGTTTAATGACTGAAGTAATCTCTCAACTTCAAACTCGTTTCAAT CCAAAAGTTAATATCATTAAAAAATGTATTGATATTTTAATNAAAAAGAATATTTAA
Length of connected seq.	1367
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas