CHF469
Library CH
(Link to library)
Clone ID CHF469
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11926-1
Original site URL
Representative seq. ID CHF469P
(Link to Original site)
Representative DNA sequence
>CHF469 (CHF469Q) /CSM/CH/CHF4-C/CHF469Q.Seq.d/
AACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGCCGATGC
CTGTACCAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAACAAATG
TACAATTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACCCCAGTCAATACTGATGA
TAACAATGCCTGTACAATTGATGCATGTACAAAAGAAGGTGGTGTAACTCATACTCCAGT
CAATACTGATGATAACAATGCTTGTACCCTTGACTCCTGTTCACCATCAACTGGCGTTTC
CCACACCCCAATTAACTGTGATGATAGTAATCCATGTACCGTAGACTCATGTTCAAATTC
AACCGGTTGTTGCAACACTCCAATCAATGTTGATGATAATAATCCATGTACTGTAGATTC
ATGTACCAAACCAACAGGTGTCACTCATACCCCAGTCAATGTAGATGATAACAACAAATG
TACAATTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAATACTGATGA
TAACAATGCATGTACCCTTGATTCCTGTTCACCATCAACTGGTATTTCCCACGCTCCAAT
TAACTGTGATGATAGTAATCCATGTACCATAGATTCATGCAATAATTCAACTGGTTGTTG
CAACACTCCAATCAATGTTGATGATAATAATCCATGTACCGTAGATTCATGTACTAAATC
AAGTGGTGTCACTCATACTCCANTCAATGGCGATGATAATAACAAATGTACCACTGGATG
CATGTACTAAANAAAGGGGGNGGAACTCATACTCCAATCTCTTGGGATGATAATAATGCC
TGTACAATTGATTCXXXXXXXXXXGANGTAAANGNGATTGCNAAACTTGTAAAAATTAAA
NAACTNTTTTTATTTAANTATATTTTAAAAAAAATTNAAAAAAAATTCNAAAAAAAATTC
AANAAAAAAAAAAAACTATTTGTTTTCTTATACTAATATTTATAATTTTTAAAAATAAAN
ATTCATNCCAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
nwlckhssqc****smyrrclyqinrcysypsqcr**qqmyn*cmyqrrwcnsypsqy**
*qclyn*cmykrrwcnsyssqy***qclyp*llftinwrfphpn*l****smyrrlmfkf
nrllqhsnqc****smycrfmyqtnrchsypsqcr**qqmyn*cmyqrrwcnsyssqy**
*qcmyp*flftinwyfprsn*l****smyhrfmq*fnwllqhsnqc****smyrrfmy*i
kwchsysxqwr***QMYHWMHVLXKGGGTHTPISWDDNNACTID---

---XVXXIAKLVKIKXLFLFXYILKKIXKKFXKKFXKKKKLFVFLY*yl*flkixihxk


Translated Amino Acid sequence (All Frames)
Frame A:
nwlckhssqc****smyrrclyqinrcysypsqcr**qqmyn*cmyqrrwcnsypsqy**
*qclyn*cmykrrwcnsyssqy***qclyp*llftinwrfphpn*l****smyrrlmfkf
nrllqhsnqc****smycrfmyqtnrchsypsqcr**qqmyn*cmyqrrwcnsyssqy**
*qcmyp*flftinwyfprsn*l****smyhrfmq*fnwllqhsnqc****smyrrfmy*i
kwchsysxqwr***QMYHWMHVLXKGGGTHTPISWDDNNACTID---

---XVXXIAKLVKIKXLFLFXYILKKIXKKFXKKFXKKKKLFVFLY*yl*flkixihxk

Frame B:
tgcvntpvnvddnnpctadactkstgvthtpvnvddnnkctidactkeggvthtpvntdd
nnactidactkeggvthtpvntddnnactldscspstgvshtpincddsnpctvdscsns
tgccntpinvddnnpctvdsctkptgvthtpvnvddnnkctidactkeggvthtpvntdd
nnactldscspstgishapincddsnpctidscnnstgccntpinvddnnpctvdsctks
sgvthtpxngddnnkcttgcmy*xkgxelilqslgmiimpvqli---

---x*xxlxnl*klxnxfylxif*kkxkknskknsxkkknylfsytniynf*k*xfxpk

Frame C:
lvv*tlqsmlmiiihvppmpvpnqqvllipqsm*mittnvqlmhvpkkvv*lipqsilmi
tmpvqlmhvqkkvv*lilqsilmitmlvpltpvhhqlafptpqltvmivihvp*thvqiq
pvvatlqsmlmiiihvl*ihvpnqqvslipqsm*mittnvqlmhvpkkvv*lilqsilmi
tmhvplipvhhqlvfptlqltvmivihvp*ihaiiqlvvatlqsmlmiiihvp*ihvlnq
vvslilxsmamiitnvpldactkxrgxnsysnllg***clyn*f---

---xkxdcxtckn*xtxfi*xyfkknxkkixkkiqxkkkticflilifiifknkxsxq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHF469 (CHF469Q) /CSM/CH/CHF4-C/CHF469Q.Seq.d/ 1681 0.0
SHF749 (SHF749Q) /CSM/SH/SHF7-C/SHF749Q.Seq.d/ 1457 0.0
SHG235 (SHG235Q) /CSM/SH/SHG2-B/SHG235Q.Seq.d/ 1409 0.0
SHF211 (SHF211Q) /CSM/SH/SHF2-A/SHF211Q.Seq.d/ 1362 0.0
CHR337 (CHR337Q) /CSM/CH/CHR3-B/CHR337Q.Seq.d/ 1326 0.0
CHI784 (CHI784Q) /CSM/CH/CHI7-D/CHI784Q.Seq.d/ 1306 0.0
CHE515 (CHE515Q) /CSM/CH/CHE5-A/CHE515Q.Seq.d/ 1294 0.0
CHM421 (CHM421Q) /CSM/CH/CHM4-A/CHM421Q.Seq.d/ 1285 0.0
CHK548 (CHK548Q) /CSM/CH/CHK5-B/CHK548Q.Seq.d/ 1283 0.0
SHG420 (SHG420Q) /CSM/SH/SHG4-A/SHG420Q.Seq.d/ 1281 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X78948|X78948.1 D.minutum ecmB gene. 50 2e-22 7
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5. 36 6e-05 19
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 40 6e-04 15
AC100096|AC100096.1 Mus musculus clone RP23-38A11, LOW-PASS SEQUENCE SAMPLING. 44 0.001 3
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 30 0.001 14
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence. 30 0.003 16
AC107998|AC107998.1 Homo sapiens chromosome 18 clone RP11-1122B5 map 18, LOW-PASS SEQUENCE SAMPLING. 42 0.003 2
CK991559|CK991559.1 EST0111 Eyestalk cDNA library Penaeus monodon cDNA clone ES-N-S03-555-W 5' similar to Histidine-rich glycoprotein precursor (Plasmodium lophurae), mRNA sequence. 30 0.005 5
BQ739629|BQ739629.1 PfESToab48c05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9U0J6 Q9U0J6 HYPOTHETICAL 312.5 KD PROTEIN. ;, mRNA sequence. 30 0.007 4
AC007203|AC007203.3 Arabidopsis thaliana chromosome I BAC T10P12 genomic sequence, complete sequence. 38 0.012 2
dna update 2004. 9.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 407 e-112
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 393 e-111
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 390 e-111
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 327 3e-88
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 291 3e-77
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 289 1e-76
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 137 6e-31
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 134 5e-30
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 124 5e-27
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 115 3e-24
protein update 2009. 3.31
PSORT

psg: 0.81 gvh: 0.37 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for CHF469 is cyt

5' end seq. ID CHF469F
5' end seq.
>CHF469F.Seq
AACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGCCGATGC
CTGTACCAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAACAAATG
TACAATTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACCCCAGTCAATACTGATGA
TAACAATGCCTGTACAATTGATGCATGTACAAAAGAAGGTGGTGTAACTCATACTCCAGT
CAATACTGATGATAACAATGCTTGTACCCTTGACTCCTGTTCACCATCAACTGGCGTTTC
CCACACCCCAATTAACTGTGATGATAGTAATCCATGTACCGTAGACTCATGTTCAAATTC
AACCGGTTGTTGCAACACTCCAATCAATGTTGATGATAATAATCCATGTACTGTAGATTC
ATGTACCAAACCAACAGGTGTCACTCATACCCCAGTCAATGTAGATGATAACAACAAATG
TACAATTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAATACTGATGA
TAACAATGCATGTACCCTTGATTCCTGTTCACCATCAACTGGTATTTCCCACGCTCCAAT
TAACTGTGATGATAGTAATCCATGTACCATAGATTCATGCAATAATTCAACTGGTTGTTG
CAACACTCCAATCAATGTTGATGATAATAATCCATGTACCGTAGATTCATGTACTAAATC
AAGTGGTGTCACTCATACTCCANTCAATGGCGATGATAATAACAAATGTACCACTGGATG
CATGTACTAAANAAAGGGGGNGGAACTCATACTCCAATCTCTTGGGATGATAATAATGCC
TGTACAATTGATTCNNNNNNNNNN
Length of 5' end seq. 864
3' end seq. ID CHF469Z
3' end seq.
>CHF469Z.Seq
NNNNNNNNNNGANGTAAANGNGATTGCNAAACTTGTAAAAATTAAANAACTNTTTTTATT
TAANTATATTTTAAAAAAAATTNAAAAAAAATTCNAAAAAAAATTCAANAAAAAAAAAAA
ACTATTTGTTTTCTTATACTAATATTTATAATTTTTAAAAATAAANATTCATNCCAAAA
Length of 3' end seq. 179
Connected seq. ID CHF469P
Connected seq.
>CHF469P.Seq
AACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGCCGATGC
CTGTACCAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAACAAATG
TACAATTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACCCCAGTCAATACTGATGA
TAACAATGCCTGTACAATTGATGCATGTACAAAAGAAGGTGGTGTAACTCATACTCCAGT
CAATACTGATGATAACAATGCTTGTACCCTTGACTCCTGTTCACCATCAACTGGCGTTTC
CCACACCCCAATTAACTGTGATGATAGTAATCCATGTACCGTAGACTCATGTTCAAATTC
AACCGGTTGTTGCAACACTCCAATCAATGTTGATGATAATAATCCATGTACTGTAGATTC
ATGTACCAAACCAACAGGTGTCACTCATACCCCAGTCAATGTAGATGATAACAACAAATG
TACAATTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAATACTGATGA
TAACAATGCATGTACCCTTGATTCCTGTTCACCATCAACTGGTATTTCCCACGCTCCAAT
TAACTGTGATGATAGTAATCCATGTACCATAGATTCATGCAATAATTCAACTGGTTGTTG
CAACACTCCAATCAATGTTGATGATAATAATCCATGTACCGTAGATTCATGTACTAAATC
AAGTGGTGTCACTCATACTCCANTCAATGGCGATGATAATAACAAATGTACCACTGGATG
CATGTACTAAANAAAGGGGGNGGAACTCATACTCCAATCTCTTGGGATGATAATAATGCC
TGTACAATTGATTC----------GANGTAAANGNGATTGCNAAACTTGTAAAAATTAAA
NAACTNTTTTTATTTAANTATATTTTAAAAAAAATTNAAAAAAAATTCNAAAAAAAATTC
AANAAAAAAAAAAAACTATTTGTTTTCTTATACTAATATTTATAATTTTTAAAAATAAAN
ATTCATNCCAAAA
Length of connected seq. 1023
Full length Seq ID -
Full length Seq. -
Length of full length seq. -