CHF465
Library CH
(Link to library)
Clone ID CHF465
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15592-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHF465 (CHF465Q) /CSM/CH/CHF4-C/CHF465Q.Seq.d/
XXXXXXXXXXGTAGTAGTNGTNGTGGTAGTAGTNGTNGTNGTGGTNGTAGTAGTGGTNGT
NGTNGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTNGTAGTAGTAGTAGTAGNNGN
AGTANTA
sequence update 2002. 9.10
Translated Amino Acid sequence
---SSXXGSSXXXGXSSGXXXSSSSSSSSSSSXSSSSXXSX


Translated Amino Acid sequence (All Frames)
Frame A:
---**xxw**xxxwx**wxxx***********x*****xxx


Frame B:
---SSXXGSSXXXGXSSGXXXSSSSSSSSSSSXSSSSXXSX


Frame C:
---vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvxxvx


Homology vs CSM-cDNA -
own update ----------
Homology vs DNA

***** No hits found ******

Lambda K H
-1.00 -1.00 -1.00

[blastall] WARNING: [000.000] 1096309228.dbm.dna: SetUpBlastSearch failed.
[blastall] ERROR: [000.000] 1096309228.dbm.dna: BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2004. 9.28
Homology vs Protein

***** No hits found ******

Lambda K H
0.263 0.0898 0.203

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 21,755,496
protein update 2009. 5.18
PSORT

psg: 0.80 gvh: 0.54 alm: 0.69 top: 0.53 tms: 0.00 mit: 0.53 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: mitochondrial
20.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: cytoplasmic

>> prediction for CHF465 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHF465Z
3' end seq.
>CHF465Z.Seq
NNNNNNNNNNGTAGTAGTNGTNGTGGTAGTAGTNGTNGTNGTGGTNGTAGTAGTGGTNGT
NGTNGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTNGTAGTAGTAGTAGTAGNNGN
AGTANTA
Length of 3' end seq. 127
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -