CHF458
Library CH
(Link to library)
Clone ID CHF458
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15591-1|Contig-U15892-1
Original site URL
Representative seq. ID CHF458P
(Link to Original site)
Representative DNA sequence
>CHF458 (CHF458Q) /CSM/CH/CHF4-C/CHF458Q.Seq.d/
CTCAAAAAGCATTACATTATTATAAAACTGGTGCATACTTTATTTCAAGTATCATTTGTG
ATATTCCCGCTGGTTTAATTGAAGTCGCATTCTTTGGTCCAATTGTTTATTGGCTAGCAA
ATCTTAGGCCAGTTTTCATTAGGTTTGTTTATTTTATGATTTTATTATTTATAACTGATA
ATTTATCATTATCATTTGCTAAAATGTGTGCAGCAATTTCACCAACAATTGAAATTGCAA
ATGTAACAGCATCAGTAATACTTTCAATTTGGTTATTATTTTCAGGTTTCACGGCACCAA
AGAATGATATTGGAGGTTGGTGGATTTGGTTATATTATATATCACCCTATACATGGATTT
TCCAAGGTTTATCAATTAATGAATTTACATATCAAGCGTATGGTTGTAAAGATTCTGAAT
TAATACCACCAAGAACTCCTCAAAATCTATTACCATATCCAGAAGGTTTCGGTGGTAATC
AAGTTTGTCAATATACATCTGGTGAACAAATTATGGATGCATTTGGTATTAATAACCCAG
ATTATTTCAAATGGATTGTTTATGCAATTTTAGGTGCTTATATTGTATTCTTTTATTCAG
TTTGTTTCTTTGCTTTGAAATATTTAAATTTXXXXXXXXXXTGAACAAAAGGAATGCAAG
ATCTCGTGTTTCATTACTCTTCTTTTCGTTCCTTTTTGCCGGTATGGTCGCAATTGGTAA
TATTCCAACAACAGTATTAGAAAGAGGTGTATTCTATCGTGAAGTTACCGGCAGGTTTCT
ATCATTCAACGGCATATATGATATCATATGTATTAACATCGTATCCATTTATTCTATCAA
CTGGTATTCTTTATATTATTCCAACATTTTGGATTGCTGGTCTGGATTCCGGTCGACATT
CATCTAAATTTTGGTATTGTCTATTCATTTTCATTATCACCTATATTATGTATGATGCGT
TTGCATTATGTCTGGCGGTTTGCTTACCAAATGAAGTTATGGCATCAACAATATGTGGTA
TTGGTTTATCATTGGCAACATTATTTGGTGGTTTCGTCATTGCAAGACCAAATTATCCAT
CTGCATATTATTGGTGTCATTATTTAGACTGGCTCAGGTATCCTTTGGAAGCATCTTGTA
CCAATGAATTCACAGGTTTAACATTTGTTTGTACAAATAATAAAGGTGCTGTACCAATTC
CAATCATTGAAAATGGTGTTCAAATAGCGATTAAATATTATTGTCCAATTACAAATGGTG
ATGATTTCATGTTAACTTATGGTTTCCATAAATTCATGAGATATATCGATATTGCTGCTA
TCTTTGGTTACATTTTCATTTTTGTGGTTTAAGTTTCTGGGGTTTCAAAAAAGTTAGAGG
CTCAATCGTAATCATCTCAAATTAAATA
sequence update 2002.10.25
Translated Amino Acid sequence
QKALHYYKTGAYFISSIICDIPAGLIEVAFFGPIVYWLANLRPVFIRFVYFMILLFITDN
LSLSFAKMCAAISPTIEIANVTASVILSIWLLFSGFTAPKNDIGGWWIWLYYISPYTWIF
QGLSINEFTYQAYGCKDSELIPPRTPQNLLPYPEGFGGNQVCQYTSGEQIMDAFGINNPD
YFKWIVYAILGAYIVFFYSVCFFALKYLN---

---NKRNARSRVSLLFFSFLFAGMVAIGNIPTTVLERGVFYREVTGRFLSFNGIYDIICI
NIVSIYSINWYSLYYSNILDCWSGFRSTFI*ilvlsihfhyhlyyv*cvcimsgglltk*
syginnmwywfiigniiwwfrhcktklsicillvslfrlaqvsfgsilyq*ihrfnicly
k**rcctnsnh*kwcsnsd*illsnykw**fhvnlwfp*iheiyryccylwlhfhfcgls
fwgfkkvrgsiviisn*i


Translated Amino Acid sequence (All Frames)
Frame A:
lkkhyiiiklvhtlfqvsfvifplv*lkshslvqlfig*qilgqfslglfil*fyyl*li
iyhyhllkcvqqfhqqlklqm*qhq*yfqfgyyfqvsrhqrmilevggfgyiiyhpihgf
skvyqlmnlhikrmvvkiln*yhqellkiyyhiqkvsvvikfvnihlvnklwmhlvlitq
iisnglfmqf*vlilysfiqfvsll*ni*i---

---*tkgmqdlvfhyssfrsflpvwsqlvifqqqy*kevysivklpagfyhstaymisyv
ltsypfilstgilyiiptfwiagldsgrhsskfwyclfifiityimydafalclavclpn
evmasticgiglslatlfggfviarpnypsayywchyldwlrypleasctneftgltfvc
tnnkgavpipiiengvqiaikyycpitngddfmltygfhkfmryidiaaifgyififvv*
vsgvskkleaqs*ssqik

Frame B:
sksitll*nwcilyfkyhl*ysrwfn*srilwsncllasks*asfh*vclfydfiiyn**
fiiiic*nvcsnftnn*nckcnsisntfnlviifrfhgtke*ywrlvdlvilyitlymdf
prfin**iyissvwl*rf*inttknssksitisrrfrw*sslsiyiw*tnygciwy**pr
lfqmdclcnfrclycillfslflcfeifkf---

---eqkeckiscfitllfvpfcrygrnw*ysnnsirkrcils*syrqvsiiqrhi*yhmy
*hrihlfyqlvffilfqhfgllvwipvdihlnfgivysfslspilcmmrlhyvwrfayqm
klwhqqyvvlvyhwqhylvvsslqdqiihlhiigvii*tgsgilwkhlvpmnsqv*hlfv
qiikvlyqfqslkmvfk*rlniivqlqmvmisc*lmvsins*disilllslvtfsflwfk
flgfqks*rlnrnhlkln

Frame C:
QKALHYYKTGAYFISSIICDIPAGLIEVAFFGPIVYWLANLRPVFIRFVYFMILLFITDN
LSLSFAKMCAAISPTIEIANVTASVILSIWLLFSGFTAPKNDIGGWWIWLYYISPYTWIF
QGLSINEFTYQAYGCKDSELIPPRTPQNLLPYPEGFGGNQVCQYTSGEQIMDAFGINNPD
YFKWIVYAILGAYIVFFYSVCFFALKYLN---

---NKRNARSRVSLLFFSFLFAGMVAIGNIPTTVLERGVFYREVTGRFLSFNGIYDIICI
NIVSIYSINWYSLYYSNILDCWSGFRSTFI*ilvlsihfhyhlyyv*cvcimsgglltk*
syginnmwywfiigniiwwfrhcktklsicillvslfrlaqvsfgsilyq*ihrfnicly
k**rcctnsnh*kwcsnsd*illsnykw**fhvnlwfp*iheiyryccylwlhfhfcgls
fwgfkkvrgsiviisn*i

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHF458 (CHF458Q) /CSM/CH/CHF4-C/CHF458Q.Seq.d/ 2351 0.0
SHK641 (SHK641Q) /CSM/SH/SHK6-B/SHK641Q.Seq.d/ 1374 0.0
AFC887 (AFC887Q) /CSM/AF/AFC8-D/AFC887Q.Seq.d/ 1281 0.0
SSG104 (SSG104Q) /CSM/SS/SSG1-A/SSG104Q.Seq.d/ 1213 0.0
AHF470 (AHF470Q) /CSM/AH/AHF4-C/AHF470Q.Seq.d/ 1209 0.0
CHJ645 (CHJ645Q) /CSM/CH/CHJ6-B/CHJ645Q.Seq.d/ 1195 0.0
AHB817 (AHB817Q) /CSM/AH/AHB8-A/AHB817Q.Seq.d/ 1191 0.0
CHS454 (CHS454Q) /CSM/CH/CHS4-C/CHS454Q.Seq.d/ 1172 0.0
AFF329 (AFF329Q) /CSM/AF/AFF3-B/AFF329Q.Seq.d/ 1082 0.0
CHQ380 (CHQ380Q) /CSM/CH/CHQ3-D/CHQ380Q.Seq.d/ 1080 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF482384|AF482384.1 Dictyostelium discoideum ABC transporter AbcG5 (abcG5) gene, complete cds. 1108 0.0 3
AF482385|AF482385.1 Dictyostelium discoideum ABC transporter AbcG6 (abcG6) gene, partial cds. 1029 0.0 3
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 36 2e-05 10
AF246689|AF246689.2 Dictyostelium discoideum ABC transporter mdrA1 (MDRA1) and ABC transporter mdrA2 (MDRA2) genes, complete cds. 36 2e-04 5
AF482381|AF482381.1 Dictyostelium discoideum ABC transporter AbcG2 (abcG2) and ABC transporter AbcG18 (abcG18) genes, complete cds. 36 4e-04 5
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence. 34 4e-04 16
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 30 0.001 22
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence. 32 0.007 16
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 40 0.050 26
AE017339|AE017339.1 Mycoplasma mobile 163K section 3 of 3 of... 36 0.051 13
dna update 2004. 9.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF482384_1(AF482384|pid:none) Dictyostelium discoideum ABC trans... 441 e-122
(Q54TV2) RecName: Full=ABC transporter G family member 5; AltNam... 441 e-122
(Q54TV1) RecName: Full=ABC transporter G family member 6; AltNam... 410 e-117
AF482394_1(AF482394|pid:none) Dictyostelium discoideum ABC trans... 134 7e-30
AC004680_16(AC004680|pid:none) Arabidopsis thaliana chromosome 2... 97 1e-18
(Q7PC88) RecName: Full=Probable pleiotropic drug resistance prot... 97 1e-18
AJ535042_1(AJ535042|pid:none) Oryza sativa (japonica cultivar-gr... 94 1e-17
(Q8S628) RecName: Full=Pleiotropic drug resistance protein 13; ... 94 1e-17
(Q8GZ52) RecName: Full=Pleiotropic drug resistance protein 2; 92 3e-17
AJ243113_1(AJ243113|pid:none) Mycosphaerella graminicola atr2 ge... 91 9e-17
protein update 2009. 3.31
PSORT

psg: 0.92 gvh: 0.43 alm: 0.25 top: 0.47 tms: 0.40 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: plasma membrane
28.0 %: endoplasmic reticulum
16.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: extracellular, including cell wall
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for CHF458 is pla

5' end seq. ID CHF458F
5' end seq.
>CHF458F.Seq
CTCAAAAAGCATTACATTATTATAAAACTGGTGCATACTTTATTTCAAGTATCATTTGTG
ATATTCCCGCTGGTTTAATTGAAGTCGCATTCTTTGGTCCAATTGTTTATTGGCTAGCAA
ATCTTAGGCCAGTTTTCATTAGGTTTGTTTATTTTATGATTTTATTATTTATAACTGATA
ATTTATCATTATCATTTGCTAAAATGTGTGCAGCAATTTCACCAACAATTGAAATTGCAA
ATGTAACAGCATCAGTAATACTTTCAATTTGGTTATTATTTTCAGGTTTCACGGCACCAA
AGAATGATATTGGAGGTTGGTGGATTTGGTTATATTATATATCACCCTATACATGGATTT
TCCAAGGTTTATCAATTAATGAATTTACATATCAAGCGTATGGTTGTAAAGATTCTGAAT
TAATACCACCAAGAACTCCTCAAAATCTATTACCATATCCAGAAGGTTTCGGTGGTAATC
AAGTTTGTCAATATACATCTGGTGAACAAATTATGGATGCATTTGGTATTAATAACCCAG
ATTATTTCAAATGGATTGTTTATGCAATTTTAGGTGCTTATATTGTATTCTTTTATTCAG
TTTGTTTCTTTGCTTTGAAATATTTAAATTTNNNNNNNNNN
Length of 5' end seq. 641
3' end seq. ID CHF458Z
3' end seq.
>CHF458Z.Seq
NNNNNNNNNNTGAACAAAAGGAATGCAAGATCTCGTGTTTCATTACTCTTCTTTTCGTTC
CTTTTTGCCGGTATGGTCGCAATTGGTAATATTCCAACAACAGTATTAGAAAGAGGTGTA
TTCTATCGTGAAGTTACCGGCAGGTTTCTATCATTCAACGGCATATATGATATCATATGT
ATTAACATCGTATCCATTTATTCTATCAACTGGTATTCTTTATATTATTCCAACATTTTG
GATTGCTGGTCTGGATTCCGGTCGACATTCATCTAAATTTTGGTATTGTCTATTCATTTT
CATTATCACCTATATTATGTATGATGCGTTTGCATTATGTCTGGCGGTTTGCTTACCAAA
TGAAGTTATGGCATCAACAATATGTGGTATTGGTTTATCATTGGCAACATTATTTGGTGG
TTTCGTCATTGCAAGACCAAATTATCCATCTGCATATTATTGGTGTCATTATTTAGACTG
GCTCAGGTATCCTTTGGAAGCATCTTGTACCAATGAATTCACAGGTTTAACATTTGTTTG
TACAAATAATAAAGGTGCTGTACCAATTCCAATCATTGAAAATGGTGTTCAAATAGCGAT
TAAATATTATTGTCCAATTACAAATGGTGATGATTTCATGTTAACTTATGGTTTCCATAA
ATTCATGAGATATATCGATATTGCTGCTATCTTTGGTTACATTTTCATTTTTGTGGTTTA
AGTTTCTGGGGTTTCAAAAAAGTTAGAGGCTCAATCGTAATCATCTCAAATTAAATA
Length of 3' end seq. 777
Connected seq. ID CHF458P
Connected seq.
>CHF458P.Seq
CTCAAAAAGCATTACATTATTATAAAACTGGTGCATACTTTATTTCAAGTATCATTTGTG
ATATTCCCGCTGGTTTAATTGAAGTCGCATTCTTTGGTCCAATTGTTTATTGGCTAGCAA
ATCTTAGGCCAGTTTTCATTAGGTTTGTTTATTTTATGATTTTATTATTTATAACTGATA
ATTTATCATTATCATTTGCTAAAATGTGTGCAGCAATTTCACCAACAATTGAAATTGCAA
ATGTAACAGCATCAGTAATACTTTCAATTTGGTTATTATTTTCAGGTTTCACGGCACCAA
AGAATGATATTGGAGGTTGGTGGATTTGGTTATATTATATATCACCCTATACATGGATTT
TCCAAGGTTTATCAATTAATGAATTTACATATCAAGCGTATGGTTGTAAAGATTCTGAAT
TAATACCACCAAGAACTCCTCAAAATCTATTACCATATCCAGAAGGTTTCGGTGGTAATC
AAGTTTGTCAATATACATCTGGTGAACAAATTATGGATGCATTTGGTATTAATAACCCAG
ATTATTTCAAATGGATTGTTTATGCAATTTTAGGTGCTTATATTGTATTCTTTTATTCAG
TTTGTTTCTTTGCTTTGAAATATTTAAATTT----------TGAACAAAAGGAATGCAAG
ATCTCGTGTTTCATTACTCTTCTTTTCGTTCCTTTTTGCCGGTATGGTCGCAATTGGTAA
TATTCCAACAACAGTATTAGAAAGAGGTGTATTCTATCGTGAAGTTACCGGCAGGTTTCT
ATCATTCAACGGCATATATGATATCATATGTATTAACATCGTATCCATTTATTCTATCAA
CTGGTATTCTTTATATTATTCCAACATTTTGGATTGCTGGTCTGGATTCCGGTCGACATT
CATCTAAATTTTGGTATTGTCTATTCATTTTCATTATCACCTATATTATGTATGATGCGT
TTGCATTATGTCTGGCGGTTTGCTTACCAAATGAAGTTATGGCATCAACAATATGTGGTA
TTGGTTTATCATTGGCAACATTATTTGGTGGTTTCGTCATTGCAAGACCAAATTATCCAT
CTGCATATTATTGGTGTCATTATTTAGACTGGCTCAGGTATCCTTTGGAAGCATCTTGTA
CCAATGAATTCACAGGTTTAACATTTGTTTGTACAAATAATAAAGGTGCTGTACCAATTC
CAATCATTGAAAATGGTGTTCAAATAGCGATTAAATATTATTGTCCAATTACAAATGGTG
ATGATTTCATGTTAACTTATGGTTTCCATAAATTCATGAGATATATCGATATTGCTGCTA
TCTTTGGTTACATTTTCATTTTTGTGGTTTAAGTTTCTGGGGTTTCAAAAAAGTTAGAGG
CTCAATCGTAATCATCTCAAATTAAATA
Length of connected seq. 1398
Full length Seq ID -
Full length Seq. -
Length of full length seq. -