CHF448
Library CH
(Link to library)
Clone ID CHF448
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15935-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHF448 (CHF448Q) /CSM/CH/CHF4-B/CHF448Q.Seq.d/
XXXXXXXXXXCAATCCAACAGATCATCAGCAAGTGGTGCAACCACTGTCTATGGTGGTGG
TACATTTGTTGAGGGTGATTTCATCAAATTCGAGAATGTTTCAATCGTATCACCAGAGGG
TAAACTTTTGGTAGAGAATTTAGATTTCCAAGTTATGCCAAATCAAAATGTAATGATCAC
TGGTCCAAATGGTTCAGGTAAGAGTTCACTCTTTAGAATCCTCGGTGAATTATGGCCACT
TCATTGTGGTACTGTAATTAAACCAAGAAAGGAAGATATCTTATTCGTTCCACAAAAACC
TTACTTGGTATTGGGTACCCTCCGTGATCAAATCATCTATCCACATAGTCATGATGATAT
GAAGAAATTGGGTGTCACCGATGATGATCTTCAACATCTTTTAGCAACCGTAGATCCAAA
TCTTACTATCATTCGTCAATGGAATTGGGATGATACCAAAGATTGGTTCACTGCCCTCTC
TGGTGGTCAAAAACAAAGAATTGCCATGGCTCGTCTCTTTTATCATCGTCCACAATACGC
TATTCTCGATGAATGTACAAGCGCCGTCTCTGATGAAGTCGAAGGTAAAATCTATGAAAC
TTGTAAAAAACTTGGTATCACTTTATTCACCGTTTCTCATCGTCCACAATTAAGAGCTTA
CCACGATTACGTTTTACTCTTTAATGGTAGAGGTGGTTGGGAATGGTCAAAAATNATCAT
G
sequence update 2002. 9.10
Translated Amino Acid sequence
---SNRSSASGATTVYGGGTFVEGDFIKFENVSIVSPEGKLLVENLDFQVMPNQNVMITG
PNGSGKSSLFRILGELWPLHCGTVIKPRKEDILFVPQKPYLVLGTLRDQIIYPHSHDDMK
KLGVTDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAI
LDECTSAVSDEVEGKIYETCKKLGITLFTVSHRPQLRAYHDYVLLFNGRGGWEWSKXIM


Translated Amino Acid sequence (All Frames)
Frame A:
---nptdhqqvvqplsmvvvhllrvissnsrmfqsyhqrvnfw*ri*isklcqikm**sl
vqmvqvrvhslessvnyghfivvl*lnqerkisysfhknltwywvpsvikssihivmmi*
rnwvspmmifnif*qp*iqillsfvngigmipkigslpslvvknkelpwlvsfiivhntl
fsmnvqapslmkskvksmklvknlvslyspflivhn*elttitfyslmvevvgngqkxs


Frame B:
---iqqiiskwcnhclwwwyic*g*fhqirecfnritrg*tfgrefrfpsyakskcndhw
skwfr*eftl*npr*imatslwycn*tkkgrylirstktllgigypp*snhlst*s**ye
eigchr**sstsfsnrrsksyyhssmelg*yqrlvhcplwwsktknchgssllssstiry
sr*mykrrl**srr*nl*nl*ktwyhfihrfssstikslprlrftl*w*rwlgmvknxh


Frame C:
---SNRSSASGATTVYGGGTFVEGDFIKFENVSIVSPEGKLLVENLDFQVMPNQNVMITG
PNGSGKSSLFRILGELWPLHCGTVIKPRKEDILFVPQKPYLVLGTLRDQIIYPHSHDDMK
KLGVTDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAI
LDECTSAVSDEVEGKIYETCKKLGITLFTVSHRPQLRAYHDYVLLFNGRGGWEWSKXIM


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHF448 (CHF448Q) /CSM/CH/CHF4-B/CHF448Q.Seq.d/ 1403 0.0
VHQ284 (VHQ284Q) /CSM/VH/VHQ2-D/VHQ284Q.Seq.d/ 1396 0.0
FC-AB11 (FC-AB11Q) /CSM/FC/FC-AB/FC-AB11Q.Seq.d/ 1396 0.0
FC-031 (FC-031Q) /CSM/CG/CG-FC/FC-031Q.Seq.d/ 1396 0.0
VHO767 (VHO767Q) /CSM/VH/VHO7-C/VHO767Q.Seq.d/ 1394 0.0
VHD794 (VHD794Q) /CSM/VH/VHD7-D/VHD794Q.Seq.d/ 1386 0.0
CHI244 (CHI244Q) /CSM/CH/CHI2-B/CHI244Q.Seq.d/ 1384 0.0
CFK157 (CFK157Q) /CSM/CF/CFK1-C/CFK157Q.Seq.d/ 1382 0.0
VHB490 (VHB490Q) /CSM/VH/VHB4-D/VHB490Q.Seq.d/ 1380 0.0
SFA844 (SFA844Q) /CSM/SF/SFA8-B/SFA844Q.Seq.d/ 1376 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY077633|AY077633.1 Dictyostelium discoideum ABC transporter ABCD.2 gene, complete cds. 1396 0.0 1
AC137832|AC137832.32 Medicago truncatula clone mth2-22i17, WORKING DRAFT SEQUENCE. 48 2e-06 3
AF334035|AF334035.1 Sterkiella histriomuscorum putative ABC transporter gene, partial sequence. 56 6e-05 2
BX563734|BX563734.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse68e09_p1c. 44 0.003 2
BX557866|BX557866.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse35c01_p1c. 44 0.003 2
BX553115|BX553115.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse127d08_p1c. 44 0.003 2
AU220913|AU220913.1 Caenorhabditis elegans cDNA clone:yk1003d12 : 3' end, single read. 52 0.013 1
U97407|U97407.2 Caenorhabditis elegans cosmid C34G6, complete sequence. 52 0.013 1
AE006263|AE006263.1 Lactococcus lactis subsp. lactis IL1403 section 25 of 218 of the complete genome. 52 0.013 1
U01056|U01056.1 Entamoeba histolytica HM-1:IMSS P-glycoprotein 6 (EhPGP6) gene complete cds. 52 0.013 1
dna update 2004. 9.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY077633_1(AY077633|pid:none) Dictyostelium discoideum ABC trans... 487 e-136
AE014298_3062(AE014298|pid:none) Drosophila melanogaster chromos... 262 7e-69
AK144060_1(AK144060|pid:none) Mus musculus adult male kidney cDN... 255 8e-67
AJ851381_1(AJ851381|pid:none) Gallus gallus mRNA for hypothetica... 253 4e-66
BC009119_1(BC009119|pid:none) Mus musculus ATP-binding cassette,... 253 4e-66
AK004660_1(AK004660|pid:none) Mus musculus adult male lung cDNA,... 253 5e-66
AK153298_1(AK153298|pid:none) Mus musculus bone marrow macrophag... 253 5e-66
AE017343_388(AE017343|pid:none) Cryptococcus neoformans var. neo... 252 7e-66
T15802(T15802) hypothetical protein C44B7.9 - Caenorhabditis ele... 252 9e-66
(P16970) RecName: Full=ATP-binding cassette sub-family D member ... 252 9e-66
protein update 2009. 5.18
PSORT

psg: 0.88 gvh: 0.36 alm: 0.43 top: 0.27 tms: 0.00 mit: 0.34 mip: 0.02
nuc: 0.03 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal

>> prediction for CHF448 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHF448Z
3' end seq.
>CHF448Z.Seq
NNNNNNNNNNCAATCCAACAGATCATCAGCAAGTGGTGCAACCACTGTCTATGGTGGTGG
TACATTTGTTGAGGGTGATTTCATCAAATTCGAGAATGTTTCAATCGTATCACCAGAGGG
TAAACTTTTGGTAGAGAATTTAGATTTCCAAGTTATGCCAAATCAAAATGTAATGATCAC
TGGTCCAAATGGTTCAGGTAAGAGTTCACTCTTTAGAATCCTCGGTGAATTATGGCCACT
TCATTGTGGTACTGTAATTAAACCAAGAAAGGAAGATATCTTATTCGTTCCACAAAAACC
TTACTTGGTATTGGGTACCCTCCGTGATCAAATCATCTATCCACATAGTCATGATGATAT
GAAGAAATTGGGTGTCACCGATGATGATCTTCAACATCTTTTAGCAACCGTAGATCCAAA
TCTTACTATCATTCGTCAATGGAATTGGGATGATACCAAAGATTGGTTCACTGCCCTCTC
TGGTGGTCAAAAACAAAGAATTGCCATGGCTCGTCTCTTTTATCATCGTCCACAATACGC
TATTCTCGATGAATGTACAAGCGCCGTCTCTGATGAAGTCGAAGGTAAAATCTATGAAAC
TTGTAAAAAACTTGGTATCACTTTATTCACCGTTTCTCATCGTCCACAATTAAGAGCTTA
CCACGATTACGTTTTACTCTTTAATGGTAGAGGTGGTTGGGAATGGTCAAAAATNATCAT
G
Length of 3' end seq. 721
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -