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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF442
Library CH
(Link to library)
Clone ID CHF442
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHF442P
(Link to Original site)
Representative DNA sequence 
>CHF442 (CHF442Q) /CSM/CH/CHF4-B/CHF442Q.Seq.d/
TNGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAANATGNGGGT
AAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAANATGTAGTTGTNCAA
TTTGANAATGTTGCAAATCAAGTTATTGAAAAATTAAAAGTTGAACATCAAAGACAANAA
TTATTAGGNGAAGTAAAACATGATTCATTAANANACTNTGCANCAAATTACATTNGGGGA
TTACTTGATAAAATTCAAAGTTNTTTACCAAAANACAACAATAAAGTTTCAAAAGTTGAA
AAANCATTTTCAAGNGGCCAAAATAATAATATCGGTAXXXXXXXXXXCAGAGAGACTATA
TGAAGAAATTCATAATNCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAG
ACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGG
AAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTT
ACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGC
CTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGA
ACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAA
TGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGA
ACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAA
GAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCA
ACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTT
AGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACA
TGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATT
AGAACAAGAACAAAATCAAAAATAATTTAATCATTNCTTNCTTTTAAAAAACT
sequence update 2002.10.25
Translated Amino Acid sequence 
XILSCIISTCXSNQISEXXGKAINQKLNENIEKVEXVVVQFXNVANQVIEKLKVEHQRQX
LLGEVKHDSLXXXAXNYIXGLLDKIQSXLPKXNNKVSKVEKXFSXGQNNNIG---

---ERLYEEIHNXNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDA
IEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSN
KNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYL
SDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQ
EKNQQLLEQEQNQK*fnhxxllkn
Translated Amino Acid sequence (All Frames) 
Frame A:
XILSCIISTCXSNQISEXXGKAINQKLNENIEKVEXVVVQFXNVANQVIEKLKVEHQRQX
LLGEVKHDSLXXXAXNYIXGLLDKIQSXLPKXNNKVSKVEKXFSXGQNNNIG---

---qrdymkkfixpi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkm
plnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfq
ikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst
*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*i
kkkinny*nknkiknnliixxf*kt

Frame B:
xfyhvsfqhvhlikflxmxvkqlikn*mkilkklxm*lxnlxmlqikllkn*klnikdxn
y*xk*nmih*xtxxqitxgdylikfkvxyqxttikfqklkxhfqxakiiisv---

---reti*rns*xqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trc
h*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk
*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccll
e*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iks
rkkstiirtrtkskii*sxlxfkk

Frame C:
dfimyhfnmxi*snf*xxg*sn*skik*ky*ks*xcscxi*xcckssy*kiks*tsktxi
irxskt*fixxlcxklhxgit**nskxftkxqq*sfks*kxifkxpk**yr---

---ERLYEEIHNXNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDA
IEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSN
KNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYL
SDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQ
EKNQQLLEQEQNQK*fnhxxllkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        759   0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        759   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        759   0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        759   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        759   0.0
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/                        759   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        759   0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/                        759   0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        759   0.0
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/                        759   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   759   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   2e-32  17
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   2e-14  24
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    34   1e-11  19
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   7e-11  32
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   7e-11  25
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   3e-10  23
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   3e-10  23
AE017338|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of...    34   1e-09  19
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   3e-09  21
dna update 2004. 9.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   292   1e-77
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    39   0.24
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    38   0.71
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.71
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   1.6
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    36   2.1
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    36   2.7
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   2.7
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    35   3.5
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    35   3.5
protein update 2009. 3.31
PSORT 

 psg: 0.93  gvh: 0.55  alm: 0.49  top: 0.47  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHF442 is nuc
5' end seq. ID CHF442F
5' end seq. 
>CHF442F.Seq
TNGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAANATGNGGGT
AAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAANATGTAGTTGTNCAA
TTTGANAATGTTGCAAATCAAGTTATTGAAAAATTAAAAGTTGAACATCAAAGACAANAA
TTATTAGGNGAAGTAAAACATGATTCATTAANANACTNTGCANCAAATTACATTNGGGGA
TTACTTGATAAAATTCAAAGTTNTTTACCAAAANACAACAATAAAGTTTCAAAAGTTGAA
AAANCATTTTCAAGNGGCCAAAATAATAATATCGGTANNNNNNNNNN
Length of 5' end seq. 347
3' end seq. ID CHF442Z
3' end seq. 
>CHF442Z.Seq
NNNNNNNNNNCAGAGAGACTATATGAAGAAATTCATAATNCCAATTTGAATAAAGCAGTT
CAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCT
CATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGAT
GCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTAT
GAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTA
CAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCA
AATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAA
CAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAA
TTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTAC
TTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAA
CAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAA
AATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAAT
CAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTNC
TTNCTTTTAAAAAACT
Length of 3' end seq. 796
Connected seq. ID CHF442P
Connected seq. 
>CHF442P.Seq
TNGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAANATGNGGGT
AAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAANATGTAGTTGTNCAA
TTTGANAATGTTGCAAATCAAGTTATTGAAAAATTAAAAGTTGAACATCAAAGACAANAA
TTATTAGGNGAAGTAAAACATGATTCATTAANANACTNTGCANCAAATTACATTNGGGGA
TTACTTGATAAAATTCAAAGTTNTTTACCAAAANACAACAATAAAGTTTCAAAAGTTGAA
AAANCATTTTCAAGNGGCCAAAATAATAATATCGGTA----------CAGAGAGACTATA
TGAAGAAATTCATAATNCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAG
ACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGG
AAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTT
ACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGC
CTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGA
ACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAA
TGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGA
ACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAA
GAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCA
ACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTT
AGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACA
TGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATT
AGAACAAGAACAAAATCAAAAATAATTTAATCATTNCTTNCTTTTAAAAAACT
Length of connected seq. 1123
Full length Seq ID -
Full length Seq. -
Length of full length seq. -