CHF434
Library CH
(Link to library)
Clone ID CHF434
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHF434P
(Link to Original site)
Representative DNA sequence
>CHF434 (CHF434Q) /CSM/CH/CHF4-B/CHF434Q.Seq.d/
GTTAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATT
AATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATT
CACACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATT
GATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATT
GCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAACGT
TTAATTGGTGATGCTGCAAAGAATCAAGTTGCAGTGAATCCAACCAATACAGTATTTGAT
GCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAACAT
TGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAA
GGTGAAACTAAAGTTTTCTCACCANAAGAAATCTCTTCAATGGTACTCTTAAAAATGAAA
GAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCXXXX
XXXXXXTCTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATG
ACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGA
GGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCA
GCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGT
CTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGAT
GAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTT
AAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACT
ATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAG
GATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAA
CTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGAT
TCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAA
AACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTC
TCATATA
sequence update 2002.10.25
Translated Amino Acid sequence
vnsvvqfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIGI
DLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAVNPTNTVFD
AKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVFSPXEISSMVLLKMK
ETAEAYLGKTINNAVITV---

---SDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNV
SAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFT
VKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMS
KLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*s
fsy


Translated Amino Acid sequence (All Frames)
Frame A:
vnsvvqfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIGI
DLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAVNPTNTVFD
AKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVFSPXEISSMVLLKMK
ETAEAYLGKTINNAVITV---

---SDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNV
SAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFT
VKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMS
KLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*s
fsy

Frame B:
liq*fnliynnnnsini*rliflyinfck*ink**fff*fthihinik*lnikkchqlvl
i*vqhihvlvfgkmivlkllqmikvieplhlmlhlliqnv*lvmlqriklq*iqpiqylm
lnv*lvvnlvtkkfkvi*nighsklfqrmvishifklnskvklkfshxkkslqwys*k*k
kplklilvkpliml*lpf---

---liinqvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlmlmqmvs*my
qlkinqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqrinwkimhsl
lkiqlkmkklqpkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kp*kqlsiqs*v
nsikkevchkvvvcqvvcqmihqrvqttk*tn*idgifqrktslsnrflkk**vskinka
shi

Frame C:
*fsssi*fiiiiiv*iykd*ffci*ifvnk*innnfffnshtyi*ilnn*ilknvinwy*
frynifmcwclak*sc*nyck*sr**nhsilcciy*yrtfnw*cckesscsesnqysi*c
*tfnws*i**qrssk*yetlaiqsyskgw**atyss*iqr*n*sfltxrnlfngtlkner
nr*slsw*nh**ccnyrs---

---**strcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*ckwylkci
s*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*igklcihc
*kfn*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrsscqsnhe*
tlsrrryatrwwyarwyvk*ftkefkqqsrrirlteffrgkhlyqidflknnklvksikl
li

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/ 1429 0.0
VHP719 (VHP719Q) /CSM/VH/VHP7-A/VHP719Q.Seq.d/ 1429 0.0
VHP716 (VHP716Q) /CSM/VH/VHP7-A/VHP716Q.Seq.d/ 1429 0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/ 1429 0.0
VHP420 (VHP420Q) /CSM/VH/VHP4-A/VHP420Q.Seq.d/ 1429 0.0
VHP236 (VHP236Q) /CSM/VH/VHP2-B/VHP236Q.Seq.d/ 1429 0.0
VHP232 (VHP232Q) /CSM/VH/VHP2-B/VHP232Q.Seq.d/ 1429 0.0
VHP224 (VHP224Q) /CSM/VH/VHP2-A/VHP224Q.Seq.d/ 1429 0.0
VHP111 (VHP111Q) /CSM/VH/VHP1-A/VHP111Q.Seq.d/ 1429 0.0
VHO677 (VHO677Q) /CSM/VH/VHO6-D/VHO677Q.Seq.d/ 1429 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70). 1429 0.0 1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,. 1421 0.0 1
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds. 244 e-134 6
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 244 e-127 12
AF221541|AF221541.1 Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds. 145 e-102 10
A58313|A58313.1 Sequence 1 from Patent WO9636707. 133 3e-92 7
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70. 133 7e-92 7
AX536934|AX536934.1 Sequence 535 from Patent WO02064766. 133 6e-90 7
M84652|M84652.1 Entamoeba heat shock protein (Hsp70) mRNA, complete cds. 165 8e-86 7
AF221542|AF221542.1 Cryptosporidium muris isolate 589 heat shock protein 70 (HSP70) gene, partial cds. 109 5e-81 8
dna update 2004. 9.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AK303980_1(AK303980|pid:none) Homo sapiens cDNA FLJ54342 complet... 357 7e-97
(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 353 6e-96
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 353 6e-96
AK097824_1(AK097824|pid:none) Homo sapiens cDNA FLJ40505 fis, cl... 349 1e-94
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2; ... 275 2e-72
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc... 275 2e-72
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s... 259 2e-67
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3; 259 2e-67
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803... 258 2e-67
EF506932_1(EF506932|pid:none) Fasciola hepatica heat shock prote... 258 4e-67
protein update 2009. 3.31
PSORT

psg: 0.87 gvh: 0.35 alm: 0.46 top: 0.27 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHF434 is cyt

5' end seq. ID CHF434F
5' end seq.
>CHF434F.Seq
GTTAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATT
AATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATT
CACACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATT
GATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATT
GCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAACGT
TTAATTGGTGATGCTGCAAAGAATCAAGTTGCAGTGAATCCAACCAATACAGTATTTGAT
GCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAACAT
TGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAA
GGTGAAACTAAAGTTTTCTCACCANAAGAAATCTCTTCAATGGTACTCTTAAAAATGAAA
GAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCNNNN
NNNNNN
Length of 5' end seq. 606
3' end seq. ID CHF434Z
3' end seq.
>CHF434Z.Seq
NNNNNNNNNNTCTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGC
TATGACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACC
AAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGT
ATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGG
TCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACA
AGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCAC
TGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATC
AACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGA
AAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAG
TAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAA
TGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGA
GGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAG
CTTCTCATATA
Length of 3' end seq. 731
Connected seq. ID CHF434P
Connected seq.
>CHF434P.Seq
GTTAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATT
AATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATT
CACACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATT
GATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATT
GCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAACGT
TTAATTGGTGATGCTGCAAAGAATCAAGTTGCAGTGAATCCAACCAATACAGTATTTGAT
GCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAACAT
TGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAA
GGTGAAACTAAAGTTTTCTCACCANAAGAAATCTCTTCAATGGTACTCTTAAAAATGAAA
GAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCC----
------TCTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATG
ACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGA
GGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCA
GCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGT
CTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGAT
GAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTT
AAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACT
ATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAG
GATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAA
CTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGAT
TCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAA
AACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTC
TCATATA
Length of connected seq. 1317
Full length Seq ID -
Full length Seq. -
Length of full length seq. -