>CHF431 (CHF431Q) /CSM/CH/CHF4-B/CHF431Q.Seq.d/
GTAATACAATGGTTGATGCTGATTCTTATCCAATTAATTCATATACAACGGGTCCTGATG
GATACTATAAATTCGATGATTTCTCATTTGGTAAATATATTATAACATTTAGCGGTGTAC
CAGATTTAATCTATCAATTCTATAAACCAGATGATCAACAACATTTAAATCATTCCACAC
TTTCAAATATAACAATTTGGTCACCAGATAATCCAATGGTTGTAAATGCAACACTCAGTG
ATCATGTCAACGCTCAATATATTCTTAGAGAACAAAATAAAGGTATTATTAGAGTGATCA
CTTATGCAATTGGAGGTAAGGTTATACCAGATTTTAAAAACACAACATATAAGGATAGTG
GTTACGCGGGTGGTGCTGTTATAGTTCAATTATACCGTAACAATTCAATAGCAACAGATC
TTCGTGGTAATCCAATACCATCGGTATTGACCAATGTATTGACTGGTGAATATCTTTTCG
ATAATGTACCAATCTTAGAGGGTTATCAAGTAATGTTTTCAAGTCCACCACCAGGTTGGA
TTTTTGAAAAGTATAGAATCACTCAAACCCCATTCATTCAACTTGATCTTTTACCATCAT
TCAATTTACCAAAATCAAATCCAAAATTAATAGATAAGAAAXXXXXXXXXXACAATGATT
GANCAAGGACCAGGTGGTGGTGAATTTTTCGATGACAATTTTAGTGATCGTGATTGGCAA
CATGATGAAACCACTTGGGGTTCTTCATATTATTTACCAGGTAGTGGTGAAGTCATTGGT
GGAGCATACGATCTTTTATCAACCAATGAAGCAATTGTAAAACATTGGTCAGTCTATAAT
GGTCGTGTTTTATATGGTTTCATTTTAATTCATGGTGCTGGTTTAGATTATGTTTTCAAT
AAAGTTAATGGTTTAGGTGATATGGATGCAAATTGTAGATTACCAAATACTTATATTGGC
AATTACGTTTGGTATGATCTAAATAAAAATGGTCTTCAAGATCCAAATGAAAAAGGAATG
GCAAATATTACTGTTCAATTATTTAGTGCCGCTAATTCAACATTCATTAATTCAACTCTA
ACCGATTCCTCTGGTAATTACAATTTCCAAGTCATTTCAGAGTTTAAATATAGAGTTCAT
TTCGTTGCTCCAAAAGGTTTCACTTATTCTCCTATCGTTACTGTTAGTAGTGATCCTAAT
GATAAAAGAGATTTGGAAAAAATCAATAGTTTACCTGATTCAAAAGGTGACGCA

NTMVDADSYPINSYTTGPDGYYKFDDFSFGKYIITFSGVPDLIYQFYKPDDQQHLNHSTL
SNITIWSPDNPMVVNATLSDHVNAQYILREQNKGIIRVITYAIGGKVIPDFKNTTYKDSG
YAGGAVIVQLYRNNSIATDLRGNPIPSVLTNVLTGEYLFDNVPILEGYQVMFSSPPPGWI
FEKYRITQTPFIQLDLLPSFNLPKSNPKLIDKK---

---TMIXQGPGGGEFFDDNFSDRDWQHDETTWGSSYYLPGSGEVIGGAYDLLSTNEAIVK
HWSVYNGRVLYGFILIHGAGLDYVFNKVNGLGDMDANCRLPNTYIGNYVWYDLNKNGLQD
PNEKGMANITVQLFSAANSTFINSTLTDSSGNYNFQVISEFKYRVHFVAPKGFTYSPIVT
VSSDPNDKRDLEKINSLPDSKGDA

Frame A:
viqwlmliliqlihiqrvlmdtinsmishlvnil*hlavyqi*sinsinqminni*iiph
fqi*qfghqiiqwl*mqhsvimstlniflenkikvlle*slmqlevrlyqilktqhiriv
vtrvvll*fnytvtiq*qqifvviqyhry*pmy*lvnifsimyqs*rvik*cfqvhhqvg
flksieslkphsfnlifyhhsiyqnqiqn**ir---

---TMIXQGPGGGEFFDDNFSDRDWQHDETTWGSSYYLPGSGEVIGGAYDLLSTNEAIVK
HWSVYNGRVLYGFILIHGAGLDYVFNKVNGLGDMDANCRLPNTYIGNYVWYDLNKNGLQD
PNEKGMANITVQLFSAANSTFINSTLTDSSGNYNFQVISEFKYRVHFVAPKGFTYSPIVT
VSSDPNDKRDLEKINSLPDSKGDA

Frame B:
*yng*c*flsn*fiyngs*wil*ir*fliw*iyyni*rctrfnlsil*tr*sttfksfht
fkynnlvtr*sngckcntq*scqrsiys*rtk*ryy*sdhlcnwr*gytrf*khni*g*w
lrgwccyssiip*qfnsnrssw*sntigidqcidw*isfr*ctnlrglssnvfksttrld
f*kv*nhsnpihst*sftiiqftkikskinr*e---

---q*lxkdqvvvnfsmtilvivignmmkplgvlhiiyqvvvkslvehtifyqpmkql*n
igqsimvvfymvsf*fmvlv*imfsiklmv*viwmqivdyqililaitfgmi*ikmvfki
qmkkewqillfnylvpliqhsliql*piplvitisksfqslniefisllqkvslillsll
lvvilmikeiwkksivyliqkvt

Frame C:
NTMVDADSYPINSYTTGPDGYYKFDDFSFGKYIITFSGVPDLIYQFYKPDDQQHLNHSTL
SNITIWSPDNPMVVNATLSDHVNAQYILREQNKGIIRVITYAIGGKVIPDFKNTTYKDSG
YAGGAVIVQLYRNNSIATDLRGNPIPSVLTNVLTGEYLFDNVPILEGYQVMFSSPPPGWI
FEKYRITQTPFIQLDLLPSFNLPKSNPKLIDKK---

---nd*xrtrww*ifr*qf**s*lat**nhlgffilftr*w*shwwsirsfinq*snckt
lvsl*wscfiwfhfnswcwfrlcfq*s*wfr*ygckl*itkylywqlrlv*sk*kwssrs
k*krngkyycsii*cr*fnih*fnsnrflw*lqfpshfrv*i*ssfrcskrfhlfsyryc
***s***krfgknq*ft*fkr*r

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF431 (CHF431Q) /CSM/CH/CHF4-B/CHF431Q.Seq.d/                       2420   0.0
SHI846 (SHI846Q) /CSM/SH/SHI8-B/SHI846Q.Seq.d/                       1231   0.0
SHC120 (SHC120Q) /CSM/SH/SHC1-A/SHC120Q.Seq.d/                       1231   0.0
SHK246 (SHK246Q) /CSM/SH/SHK2-B/SHK246Q.Seq.d/                       1217   0.0
CHM864 (CHM864Q) /CSM/CH/CHM8-C/CHM864Q.Seq.d/                       1189   0.0
CHL353 (CHL353Q) /CSM/CH/CHL3-C/CHL353Q.Seq.d/                       1189   0.0
AHA670 (AHA670Q) /CSM/AH/AHA6-C/AHA670Q.Seq.d/                       1189   0.0
SFI692 (SFI692Q) /CSM/SF/SFI6-D/SFI692Q.Seq.d/                       1181   0.0
CHN216 (CHN216Q) /CSM/CH/CHN2-A/CHN216Q.Seq.d/                       1181   0.0
CHQ323 (CHQ323Q) /CSM/CH/CHQ3-A/CHQ323Q.Seq.d/                       1172   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.  1271   0.0    1
AL391061|AL391061.8 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-456M3.    40   6e-04  9
AC025580|AC025580.8 Homo sapiens chromosome 15 clone RP11-519G16 map 15q21.1, complete sequence.    50   0.004  4
AE015942|AE015942.1 Clostridium tetani E88, section 7 of 10 of the complete genome.    36   0.058  12
AC087791|AC087791.2 Homo sapiens chromosome 15 clone RP11-519G16 map 15, WORKING DRAFT SEQUENCE, 19 unordered pieces.    50   0.089  1
AA766861|AA766861.1 oc87g09.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGE:1356736 3' similar to contains element TAR1 repetitive element ;, mRNA sequence.    50   0.089  1
Z99281|Z99281.1 Caenorhabditis elegans YAC Y57G11C.                30   0.12   16
AL049613|AL049613.2 Human DNA sequence from clone RP1-231N13 on chromosome 6q22 Contains GSSs.    38   0.14   7
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    38   0.18   9
AC084833|AC084833.1 Homo sapiens chromosome 11 clone RP11-1084M13 map 11, WORKING DRAFT SEQUENCE, 11 unordered pieces.    32   0.30   11

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O70022) RecName: Full=Fibrinogen-binding protein; Flags: Precur...    75   4e-12
CP000029_203(CP000029|pid:none) Staphylococcus epidermidis RP62A...    75   4e-12
CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    75   5e-12
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    74   1e-11
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    74   1e-11
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    74   1e-11
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    74   1e-11
AM076227_1(AM076227|pid:none) Staphylococcus aureus partial sdrD...    74   1e-11
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD...    74   1e-11
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur...    74   1e-11

 psg: 0.75  gvh: 0.50  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: peroxisomal

>> prediction for CHF431 is cyt

>CHF431F.Seq
GTAATACAATGGTTGATGCTGATTCTTATCCAATTAATTCATATACAACGGGTCCTGATG
GATACTATAAATTCGATGATTTCTCATTTGGTAAATATATTATAACATTTAGCGGTGTAC
CAGATTTAATCTATCAATTCTATAAACCAGATGATCAACAACATTTAAATCATTCCACAC
TTTCAAATATAACAATTTGGTCACCAGATAATCCAATGGTTGTAAATGCAACACTCAGTG
ATCATGTCAACGCTCAATATATTCTTAGAGAACAAAATAAAGGTATTATTAGAGTGATCA
CTTATGCAATTGGAGGTAAGGTTATACCAGATTTTAAAAACACAACATATAAGGATAGTG
GTTACGCGGGTGGTGCTGTTATAGTTCAATTATACCGTAACAATTCAATAGCAACAGATC
TTCGTGGTAATCCAATACCATCGGTATTGACCAATGTATTGACTGGTGAATATCTTTTCG
ATAATGTACCAATCTTAGAGGGTTATCAAGTAATGTTTTCAAGTCCACCACCAGGTTGGA
TTTTTGAAAAGTATAGAATCACTCAAACCCCATTCATTCAACTTGATCTTTTACCATCAT
TCAATTTACCAAAATCAAATCCAAAATTAATAGATAAGAAANNNNNNNNNN

>CHF431Z.Seq
NNNNNNNNNNACAATGATTGANCAAGGACCAGGTGGTGGTGAATTTTTCGATGACAATTT
TAGTGATCGTGATTGGCAACATGATGAAACCACTTGGGGTTCTTCATATTATTTACCAGG
TAGTGGTGAAGTCATTGGTGGAGCATACGATCTTTTATCAACCAATGAAGCAATTGTAAA
ACATTGGTCAGTCTATAATGGTCGTGTTTTATATGGTTTCATTTTAATTCATGGTGCTGG
TTTAGATTATGTTTTCAATAAAGTTAATGGTTTAGGTGATATGGATGCAAATTGTAGATT
ACCAAATACTTATATTGGCAATTACGTTTGGTATGATCTAAATAAAAATGGTCTTCAAGA
TCCAAATGAAAAAGGAATGGCAAATATTACTGTTCAATTATTTAGTGCCGCTAATTCAAC
ATTCATTAATTCAACTCTAACCGATTCCTCTGGTAATTACAATTTCCAAGTCATTTCAGA
GTTTAAATATAGAGTTCATTTCGTTGCTCCAAAAGGTTTCACTTATTCTCCTATCGTTAC
TGTTAGTAGTGATCCTAATGATAAAAGAGATTTGGAAAAAATCAATAGTTTACCTGATTC
AAAAGGTGACGCA

>CHF431P.Seq
GTAATACAATGGTTGATGCTGATTCTTATCCAATTAATTCATATACAACGGGTCCTGATG
GATACTATAAATTCGATGATTTCTCATTTGGTAAATATATTATAACATTTAGCGGTGTAC
CAGATTTAATCTATCAATTCTATAAACCAGATGATCAACAACATTTAAATCATTCCACAC
TTTCAAATATAACAATTTGGTCACCAGATAATCCAATGGTTGTAAATGCAACACTCAGTG
ATCATGTCAACGCTCAATATATTCTTAGAGAACAAAATAAAGGTATTATTAGAGTGATCA
CTTATGCAATTGGAGGTAAGGTTATACCAGATTTTAAAAACACAACATATAAGGATAGTG
GTTACGCGGGTGGTGCTGTTATAGTTCAATTATACCGTAACAATTCAATAGCAACAGATC
TTCGTGGTAATCCAATACCATCGGTATTGACCAATGTATTGACTGGTGAATATCTTTTCG
ATAATGTACCAATCTTAGAGGGTTATCAAGTAATGTTTTCAAGTCCACCACCAGGTTGGA
TTTTTGAAAAGTATAGAATCACTCAAACCCCATTCATTCAACTTGATCTTTTACCATCAT
TCAATTTACCAAAATCAAATCCAAAATTAATAGATAAGAAA----------ACAATGATT
GANCAAGGACCAGGTGGTGGTGAATTTTTCGATGACAATTTTAGTGATCGTGATTGGCAA
CATGATGAAACCACTTGGGGTTCTTCATATTATTTACCAGGTAGTGGTGAAGTCATTGGT
GGAGCATACGATCTTTTATCAACCAATGAAGCAATTGTAAAACATTGGTCAGTCTATAAT
GGTCGTGTTTTATATGGTTTCATTTTAATTCATGGTGCTGGTTTAGATTATGTTTTCAAT
AAAGTTAATGGTTTAGGTGATATGGATGCAAATTGTAGATTACCAAATACTTATATTGGC
AATTACGTTTGGTATGATCTAAATAAAAATGGTCTTCAAGATCCAAATGAAAAAGGAATG
GCAAATATTACTGTTCAATTATTTAGTGCCGCTAATTCAACATTCATTAATTCAACTCTA
ACCGATTCCTCTGGTAATTACAATTTCCAAGTCATTTCAGAGTTTAAATATAGAGTTCAT
TTCGTTGCTCCAAAAGGTTTCACTTATTCTCCTATCGTTACTGTTAGTAGTGATCCTAAT
GATAAAAGAGATTTGGAAAAAATCAATAGTTTACCTGATTCAAAAGGTGACGCA