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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF413
Library CH
(Link to library)
Clone ID CHF413
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHF413 (CHF413Q) /CSM/CH/CHF4-A/CHF413Q.Seq.d/
XXXXXXXXXXCCATCATCATNTGCTGCAAGCTNTTCTCCATCTTCATNTGCTGCAAGCTN
TTCTCCATCTTCATNTGCTGCAAGCTCTTCCCCATCTTCATNTGCATCATCAAGCTCTTC
CCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCTTCATCTGCATCATCAAGCTCTGC
TCCATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCTGCAGCAAC
TACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAACTACAACCGCAAC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---HHHXLQAXLHLHXLQAXLHLHXLQALPHLHXHHQALPHLHLHHQALPHLHLHHQALL
HLHLHHLHLHHLHLHHLQQLQLQLQLQLQLQLQLQLQPQ
Translated Amino Acid sequence (All Frames) 
Frame A:
---HHHXLQAXLHLHXLQAXLHLHXLQALPHLHXHHQALPHLHLHHQALPHLHLHHQALL
HLHLHHLHLHHLHLHHLQQLQLQLQLQLQLQLQLQLQPQ


Frame B:
---iixccklfsifxccklfsifxccklfpifxciiklfpificiiklcpificiiklcs
ificiificiificiicsnyscnyncnyscnyncnynrn


Frame C:
---ssxaasxspssxaasxspssxaassspssxassssspsssassssapsssassssap
sssassssassssassaattaattiattaatttattta
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI263 (SLI263Q) /CSM/SL/SLI2-C/SLI263Q.Seq.d/                        262   3e-69
SLH548 (SLH548Q) /CSM/SL/SLH5-B/SLH548Q.Seq.d/                        262   3e-69
SLH472 (SLH472Q) /CSM/SL/SLH4-C/SLH472Q.Seq.d/                        262   3e-69
SLH386 (SLH386Q) /CSM/SL/SLH3-D/SLH386Q.Seq.d/                        262   3e-69
SLH314 (SLH314Q) /CSM/SL/SLH3-A/SLH314Q.Seq.d/                        262   3e-69
SLH308 (SLH308Q) /CSM/SL/SLH3-A/SLH308Q.Seq.d/                        262   3e-69
SLF396 (SLF396Q) /CSM/SL/SLF3-D/SLF396Q.Seq.d/                        262   3e-69
SLE543 (SLE543Q) /CSM/SL/SLE5-B/SLE543Q.Seq.d/                        262   3e-69
SLE435 (SLE435Q) /CSM/SL/SLE4-B/SLE435Q.Seq.d/                        262   3e-69
SLE278 (SLE278Q) /CSM/SL/SLE2-D/SLE278Q.Seq.d/                        262   3e-69
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96.   262   1e-97  4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   262   7e-94  4
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    68   9e-08  1
AC122076|AC122076.4 Rattus norvegicus clone CH230-277E22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    62   5e-06  1
AL672127|AL672127.9 Mouse DNA sequence from clone RP23-370O18 on chromosome X.    60   2e-05  1
AC114565|AC114565.6 Mus musculus chromosome 9 clone RP23-118I16 map 9, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces.    60   2e-05  1
AC136541|AC136541.1 Rattus norvegicus clone CH230-287A11, *** SEQUENCING IN PROGRESS ***, 55 unordered pieces.    60   2e-05  1
Y17350|Y17350.1 Laminaria digitata simple tandem repeat DNA, Ld2-167.    60   2e-05  1
AC112599|AC112599.4 Rattus norvegicus clone CH230-112A20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    60   2e-05  1
AC102934|AC102934.2 Mus musculus clone RP24-209C11, WORKING DRAFT SEQUENCE, 23 unordered pieces.    58   8e-05  1
dna update 2004. 9.28
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 63,704,062
protein update 2009. 5.18
PSORT 

 psg: 0.75  gvh: 0.62  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 28.0 %: nuclear
	 12.0 %: cytoskeletal

>> prediction for CHF413 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHF413Z
3' end seq. 
>CHF413Z.Seq
NNNNNNNNNNCCATCATCATNTGCTGCAAGCTNTTCTCCATCTTCATNTGCTGCAAGCTN
TTCTCCATCTTCATNTGCTGCAAGCTCTTCCCCATCTTCATNTGCATCATCAAGCTCTTC
CCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCTTCATCTGCATCATCAAGCTCTGC
TCCATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCTGCAGCAAC
TACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAACTACAACCGCAAC
Length of 3' end seq. 300
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -