CHF377
Library CH
(Link to library)
Clone ID CHF377
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16308-1
Original site URL
Representative seq. ID CHF377P
(Link to Original site)
Representative DNA sequence
>CHF377 (CHF377Q) /CSM/CH/CHF3-D/CHF377Q.Seq.d/
ATTAAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATAT
AATGAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTC
ATTAAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTGTGATTCTGGATG
GACATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGT
TCAATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATTGGATT
TTTAGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGT
TAAAAATGATAGAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGC
AAGTTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATT
TGGAAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACC
AACATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCACTATGAATT
GAAAAAGAAATTTAAAGAAGAXXXXXXXXXXAGAAGTTTAACTTATGAAGATGGTAAAGG
TTTAGAAATTCCTGCAATTGATGAATCCTCAATTAATGCACGTTTTGAATGTTATTTAGA
TGAAGTACCATCAAATTCACAACAATCGAATGGTGGTGGTGGTGGTGATGATATTAGAAA
ACAATCAATTAATTATCAACATAAATTCCAAATTTATCAAGGTCAAGATTCTTCTTATAT
GTCTTCAAAATCTTTTATGTTAAAACCATTACCAGAGTTTATTCATATTCTATCAATGGA
AAGATCTGGTCCTCGTTCAATTAAATTAAGAATTCATAATATTGAAAATAATAATCAATC
TCCAATCACTTTTGATTTAAATGGCTTATTCTCTTTTATCAAATCAATTAAATCAATTAA
AGAATATAATTTATCTTTAATCAATAGATTCGTTGATAATAATATTGATAATATTATTTC
TTCTCATCGTTCAATTGTTGGAAAAAATCTTTTCCCTATTAAAGATACTCCAACTCGTTT
CAACCCAATTAATACAAAACAAACTAAAATTACCTTATATCCATCAGAAATTAAAGCAAT
NAAATTACTTATCATTAAAATTATGTATCAAATAAAATAAA
sequence update 2002.10.25
Translated Amino Acid sequence
lk*NSFNNNNLIFFIVFKDIMKNFYYFILILLFFNEVCYSLKDGEIKLHLIPHSHCDSGW
TSTMNEYYMGQVKSIISSMVQSLNVESNPPRKFVWSEIGFLEQWWDDMPIEIKNDFIKHV
KNDRIEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHSSLTP
TLQAQFGYKHVVLNRIHYELKKKFKE---

---RSLTYEDGKGLEIPAIDESSINARFECYLDEVPSNSQQSNGGGGGDDIRKQSINYQH
KFQIYQGQDSSYMSSKSFMLKPLPEFIHILSMERSGPRSIKLRIHNIENNNQSPITFDLN
GLFSFIKSIKSIKEYNLSLINRFVDNNIDNIISSHRSIVGKNLFPIKDTPTRFNPINTKQ
TKITLYPSEIKAXKLLIIKIMYQIK*


Translated Amino Acid sequence (All Frames)
Frame A:
ikikfi****fnffhsiqryneklllfyinfiif**sllfikrw*n*tsfnstftl*fwm
dinnerilygss*kyyiingsiikc*ikst*kiclv*nwifrtmvg*yan*n*k*fyktc
*k**n*ickwwmgne**smckfrkcn*tiikwt*iy*reiwkttrewman*siwtfiidt
nitssiwl*tcciesysl*iekei*rr---

---RSLTYEDGKGLEIPAIDESSINARFECYLDEVPSNSQQSNGGGGGDDIRKQSINYQH
KFQIYQGQDSSYMSSKSFMLKPLPEFIHILSMERSGPRSIKLRIHNIENNNQSPITFDLN
GLFSFIKSIKSIKEYNLSLINRFVDNNIDNIISSHRSIVGKNLFPIKDTPTRFNPINTKQ
TKITLYPSEIKAXKLLIIKIMYQIK*

Frame B:
lk*NSFNNNNLIFFIVFKDIMKNFYYFILILLFFNEVCYSLKDGEIKLHLIPHSHCDSGW
TSTMNEYYMGQVKSIISSMVQSLNVESNPPRKFVWSEIGFLEQWWDDMPIEIKNDFIKHV
KNDRIEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHSSLTP
TLQAQFGYKHVVLNRIHYELKKKFKE---

---ev*lmkmvkv*kflqlmnpqlmhvlnvi*mkyhqihnnrmvvvvvmilennqliini
nskfikvkilliclqnllc*nhyqslfifyqwkdlvlvqln*efiilkiiinlqslli*m
aysllsnqlnqlkniiyl*sidsliiiliilfllivqllekifsllkilqlvstqliqnk
lklpyihqklkqxnylslklcik*nk

Frame C:
*nkihliiii*ffs*yski**ktfiily*fyyflmkfaih*kmvklnfi*fhihivildg
hqq*tniiwvklkvlyhqwfnh*mlnqihlenlfglkldf*nnggmicqlklkmil*nml
kmielnl*mvdg**mmkhvqv*kv*ldnyqmdinllernlennqrvdgklihldihh*hq
hyklnlvinmly*ivftmn*krnlkk---

---kfnl*rw*rfrnscn**iln*ctf*mlfr*stikfttiewwwww**y*ktin*lst*
ipnlsrsrfflyvfkifyvktitrvysysingkiwssfn*ikns*y*k**sisnhf*fkw
lilfyqin*in*ri*fifnq*ir***y**yyffssfncwkksfpy*rysnsfqpn*yktn
*nylisirn*snxityh*nyvsnki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL340 (SHL340Q) /CSM/SH/SHL3-B/SHL340Q.Seq.d/ 1025 0.0
SHL163 (SHL163Q) /CSM/SH/SHL1-C/SHL163Q.Seq.d/ 1025 0.0
SHK514 (SHK514Q) /CSM/SH/SHK5-A/SHK514Q.Seq.d/ 1025 0.0
SHK450 (SHK450Q) /CSM/SH/SHK4-C/SHK450Q.Seq.d/ 1025 0.0
SHK365 (SHK365Q) /CSM/SH/SHK3-C/SHK365Q.Seq.d/ 1025 0.0
SHJ890 (SHJ890Q) /CSM/SH/SHJ8-D/SHJ890Q.Seq.d/ 1025 0.0
SHJ720 (SHJ720Q) /CSM/SH/SHJ7-A/SHJ720Q.Seq.d/ 1025 0.0
SHJ672 (SHJ672Q) /CSM/SH/SHJ6-C/SHJ672Q.Seq.d/ 1025 0.0
SHJ609 (SHJ609Q) /CSM/SH/SHJ6-A/SHJ609Q.Seq.d/ 1025 0.0
SHJ369 (SHJ369Q) /CSM/SH/SHJ3-C/SHJ369Q.Seq.d/ 1025 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 34 1e-17 33
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 40 4e-15 23
CR382400|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5. 32 2e-14 25
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 40 3e-14 19
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 1e-11 16
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2. 38 1e-10 27
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 34 2e-10 20
AE017337|AE017337.1 Mycoplasma mobile 163K section 1 of 3 of... 40 3e-10 18
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 40 4e-10 18
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 36 4e-10 15
dna update 2004. 9.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54YC4) RecName: Full=Alpha-mannosidase D; EC=3.2.1.24... 150 1e-34
(Q54YF7) RecName: Full=Alpha-mannosidase B; EC=3.2.1.24... 147 7e-34
BC142656_1(BC142656|pid:none) Homo sapiens mannosidase, alpha, c... 145 3e-33
(P27046) RecName: Full=Alpha-mannosidase 2; EC=3.2.1.11... 145 4e-33
AL391146_7(AL391146|pid:none) Arabidopsis thaliana DNA chromosom... 144 6e-33
(P28494) RecName: Full=Alpha-mannosidase 2; EC=3.2.1.11... 143 1e-32
M24353_1(M24353|pid:none) Rattus norvegicus alpha-mannosidase II... 143 1e-32
AB011474_23(AB011474|pid:none) Arabidopsis thaliana genomic DNA,... 142 2e-32
AK161799_1(AK161799|pid:none) Mus musculus 13 days embryo male t... 142 3e-32
AF107018_1(AF107018|pid:none) Mus musculus alpha-mannosidase IIx... 142 3e-32
protein update 2009. 3.31
PSORT

psg: 0.94 gvh: 0.66 alm: 0.48 top: 0.47 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: extracellular, including cell wall
28.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal
8.0 %: nuclear
4.0 %: vacuolar

>> prediction for CHF377 is exc

5' end seq. ID CHF377F
5' end seq.
>CHF377F.Seq
ATTAAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATAT
AATGAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTC
ATTAAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTGTGATTCTGGATG
GACATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGT
TCAATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATTGGATT
TTTAGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGT
TAAAAATGATAGAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGC
AAGTTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATT
TGGAAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACC
AACATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCACTATGAATT
GAAAAAGAAATTTAAAGAAGANNNNNNNNNN
Length of 5' end seq. 631
3' end seq. ID CHF377Z
3' end seq.
>CHF377Z.Seq
NNNNNNNNNNAGAAGTTTAACTTATGAAGATGGTAAAGGTTTAGAAATTCCTGCAATTGA
TGAATCCTCAATTAATGCACGTTTTGAATGTTATTTAGATGAAGTACCATCAAATTCACA
ACAATCGAATGGTGGTGGTGGTGGTGATGATATTAGAAAACAATCAATTAATTATCAACA
TAAATTCCAAATTTATCAAGGTCAAGATTCTTCTTATATGTCTTCAAAATCTTTTATGTT
AAAACCATTACCAGAGTTTATTCATATTCTATCAATGGAAAGATCTGGTCCTCGTTCAAT
TAAATTAAGAATTCATAATATTGAAAATAATAATCAATCTCCAATCACTTTTGATTTAAA
TGGCTTATTCTCTTTTATCAAATCAATTAAATCAATTAAAGAATATAATTTATCTTTAAT
CAATAGATTCGTTGATAATAATATTGATAATATTATTTCTTCTCATCGTTCAATTGTTGG
AAAAAATCTTTTCCCTATTAAAGATACTCCAACTCGTTTCAACCCAATTAATACAAAACA
AACTAAAATTACCTTATATCCATCAGAAATTAAAGCAATNAAATTACTTATCATTAAAAT
TATGTATCAAATAAAATAAA
Length of 3' end seq. 620
Connected seq. ID CHF377P
Connected seq.
>CHF377P.Seq
ATTAAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATAT
AATGAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTC
ATTAAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTGTGATTCTGGATG
GACATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGT
TCAATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATTGGATT
TTTAGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGT
TAAAAATGATAGAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGC
AAGTTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATT
TGGAAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACC
AACATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCACTATGAATT
GAAAAAGAAATTTAAAGAAGA----------AGAAGTTTAACTTATGAAGATGGTAAAGG
TTTAGAAATTCCTGCAATTGATGAATCCTCAATTAATGCACGTTTTGAATGTTATTTAGA
TGAAGTACCATCAAATTCACAACAATCGAATGGTGGTGGTGGTGGTGATGATATTAGAAA
ACAATCAATTAATTATCAACATAAATTCCAAATTTATCAAGGTCAAGATTCTTCTTATAT
GTCTTCAAAATCTTTTATGTTAAAACCATTACCAGAGTTTATTCATATTCTATCAATGGA
AAGATCTGGTCCTCGTTCAATTAAATTAAGAATTCATAATATTGAAAATAATAATCAATC
TCCAATCACTTTTGATTTAAATGGCTTATTCTCTTTTATCAAATCAATTAAATCAATTAA
AGAATATAATTTATCTTTAATCAATAGATTCGTTGATAATAATATTGATAATATTATTTC
TTCTCATCGTTCAATTGTTGGAAAAAATCTTTTCCCTATTAAAGATACTCCAACTCGTTT
CAACCCAATTAATACAAAACAAACTAAAATTACCTTATATCCATCAGAAATTAAAGCAAT
NAAATTACTTATCATTAAAATTATGTATCAAATAAAATAAA
Length of connected seq. 1231
Full length Seq ID -
Full length Seq. -
Length of full length seq. -