CHF375 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHF375
Library	CH (Link to library)
Clone ID	CHF375 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16313-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHF3-D/CHF375Q.Seq.d/
Representative seq. ID	CHF375E (Link to Original site)
Representative DNA sequence	>CHF375 (CHF375Q) /CSM/CH/CHF3-D/CHF375Q.Seq.d/ ATTTTTGCTTCCAACAAGTTTGCTCTGCAACTGATGGAGATGTTTGTACAACAGTTCCAT TGAATTGTGATGATGGCTTACAGTGTACAGTTGATAGTTGTATTGGACCAATGGGTGTTT GTAGTCATATAGCTATTGCACCAAAATGTTTAGAATGCGCATTGGAACCATGTATTACAA CAGATAATTGTCAACCAGTTATTTGTGGTCCAGATGGACGTTGTATCCAAGAGACAATTG AAGATTTTTGTGATGATTATAATTATTGCACTGTTGATACATGCACAGGAGTAGGTTGTG AACATGCTTCAATTTCAGGTTGTCGTAATTGTACAAATGGAATTGGTTGTACAACACCAT CAGATGATGCATGTAATTTACAAGTATGTTCTGAAACTGGAGATAGTTGTCTTACAATGG TTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACTGGTATTT GTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACTA TCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGCGATTGTTGTCCAATTGGTCAAA AATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGTATTC CAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCATTACACAG AATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAAT GTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTT TAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATT TCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCAGTTTGCA AACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATTTCTTTTCTTTTT ATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAATTTAATATTACAA TATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAACAACTGCCCCATT
sequence update	2002.10.27
Translated Amino Acid sequence	FCFQQVCSATDGDVCTTVPLNCDDGLQCTVDSCIGPMGVCSHIAIAPKCLECALEPCITT DNCQPVICGPDGRCIQETIEDFCDDYNYCTVDTCTGVGCEHASISGCRNCTNGIGCTTPS DDACNLQVCSETGDSCLTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTI PPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTE SGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNF ISSKHSCYGESCCKFTPVCKPKGHSLkklkliyyffsfyyifllkfynqvnfqfniti tlsllnliinkkttap
Translated Amino Acid sequence (All Frames)	Frame A: ifasnkfalqlmemfvqqfhivmmaysvqlivvldqwvfvvillhqnvnahwnhvlq qiivnqlfvvqmdvvskrqlkifvmiiiiallihaqevvnmlqfqvvvivqmelvvqhh qmmhviykyvlkleivvlqwfivmiitivlkisvilvfvkiiqltvvlhhhqfqlvel slqpllvyhklsaivvqlvknvysmvmkfvlnqqplvvfqnllvvlvqqlaglqvitq nqvqvihiyvidiivkeewnvmllmvfqnvyhqttnvivifivrdkvispvlwlkiqi sflvnivvmvnhvvnshqfanqkdthfkknnyiisflfiiyfynfitkstnfnlilq ykhvycki**ikkqlph Frame B: fllptsllcnwrclynssielwltvyslywtngclsysyctkmfrmrigtmyyn rlstsylwsrwtlyprdnrfllllhcymhrsrltcfnfrlslykwnwlynti rcmftsmfnwrlsyngfkl**rlyrvfkywylsksnrlcytitsfnwwny psnhywcitsvrllsnwskmfisqwsnlytsnhwwysrinywlcwynnwqgyrslhr iryrstfmislkrngmsccwcsrmftiklqmfrlfrssletrfhlfygkskf hf*tllwimlihtslqtkrtltlkktkinilflffllyifikilpsqlisiyyn inikfivkfnnkknncpi Frame C: FCFQQVCSATDGDVCTTVPLNCDDGLQCTVDSCIGPMGVCSHIAIAPKCLECALEPCITT DNCQPVICGPDGRCIQETIEDFCDDYNYCTVDTCTGVGCEHASISGCRNCTNGIGCTTPS DDACNLQVCSETGDSCLTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTI PPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTE SGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNF ISSKHSCYGESCCKFTPVCKPKGHSLkklkliyyffsfyyifllkfynqvnfqfniti tlsll*nliinkkttap
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHF375 (CHF375Q) /CSM/CH/CHF3-D/CHF375Q.Seq.d/ 1945 0.0 SHD514 (SHD514Q) /CSM/SH/SHD5-A/SHD514Q.Seq.d/ 1546 0.0 SHB622 (SHB622Q) /CSM/SH/SHB6-A/SHB622Q.Seq.d/ 1451 0.0 SHF864 (SHF864Q) /CSM/SH/SHF8-C/SHF864Q.Seq.d/ 1429 0.0 CHP164 (CHP164Q) /CSM/CH/CHP1-C/CHP164Q.Seq.d/ 1340 0.0 SHJ668 (SHJ668Q) /CSM/SH/SHJ6-C/SHJ668Q.Seq.d/ 1298 0.0 AHC671 (AHC671Q) /CSM/AH/AHC6-C/AHC671Q.Seq.d/ 1235 0.0 AHB727 (AHB727Q) /CSM/AH/AHB7-B/AHB727Q.Seq.d/ 1235 0.0 SHB423 (SHB423Q) /CSM/SH/SHB4-A/SHB423Q.Seq.d/ 1233 0.0 SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/ 1231 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 30 0.070 21 AL161506\|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18. 42 0.090 4 AC025368\|AC025368.1 Homo sapiens chromosome 13 clone RP11-270C9 map 13, LOW-PASS SEQUENCE SAMPLING. 40 0.13 3 AC116330\|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 42 0.15 8 AL034393\|AL034393.1 Caenorhabditis elegans YAC Y18D10A. 34 0.35 9 AL357653\|AL357653.5 Human DNA sequence * SEQUENCING CANCELLED * from clone RP11-311E14. 36 0.46 6 BX323883\|BX323883.14 Zebrafish DNA sequence from clone CH211-285M21 in linkage group 1. 38 0.51 9 AF160181\|AF160181.1 Arabidopsis thaliana BAC T14A16. 42 0.58 2 CR293514\|CR293514.9 Zebrafish DNA sequence from clone CH211-153C2 in linkage group 22. 34 0.61 7 AC122160\|AC122160.21 Medicago truncatula clone mth2-23d6, complete sequence. 34 0.89 7
dna update	2004. 9.28
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 659 0.0 (Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 362 2e-98 S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 100 9e-20 AC116984_103(AC116984\|pid:none) Dictyostelium discoideum chromos... 95 5e-18 (P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 93 2e-17 AC117072_61(AC117072\|pid:none) Dictyostelium discoideum chromoso... 93 2e-17 A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 92 2e-17 (Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 83 2e-14 A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 80 2e-13 (Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 74 1e-11
protein update	2009. 4.12
PSORT	psg: 0.75 gvh: 0.40 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 36.0 %: nuclear 16.0 %: cytoskeletal 4.0 %: peroxisomal >> prediction for CHF375 is cyt
5' end seq. ID	CHF375F
5' end seq.	>CHF375F.Seq ATTTTTGCTTCCAACAAGTTTGCTCTGCAACTGATGGAGATGTTTGTACAACAGTTCCAT TGAATTGTGATGATGGCTTACAGTGTACAGTTGATAGTTGTATTGGACCAATGGGTGTTT GTAGTCATATAGCTATTGCACCAAAATGTTTAGAATGCGCATTGGAACCATGTATTACAA CAGATAATTGTCAACCAGTTATTTGTGGTCCAGATGGACGTTGTATCCAAGAGACAATTG AAGATTTTTGTGATGATTATAATTATTGCACTGTTGATACATGCACAGGAGTAGGTTGTG AACATGCTTCAATTTCAGGTTGTCGTAATTGTACAAATGGAATTGGTTGTACAACACCAT CAGATGATGCATGTAATTTACAAGTATGTTCTGAAACTGGAGATAGTTGTCTTACAATGG TTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACTGGTATTT GTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACTA TNNNNNNNNNN
Length of 5' end seq.	551
3' end seq. ID	CHF375Z
3' end seq.	>CHF375Z.Seq NNNNNNNNNNTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAAT TGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGCGATTGTTGTCC AATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCAC TGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGG TCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAG AGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATG TTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAA AAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCAC ACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATTT CTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAATT TAATATTACAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAACAAC TGCCCCATT
Length of 3' end seq.	669
Connected seq. ID	CHF375P
Connected seq.	>CHF375P.Seq ATTTTTGCTTCCAACAAGTTTGCTCTGCAACTGATGGAGATGTTTGTACAACAGTTCCAT TGAATTGTGATGATGGCTTACAGTGTACAGTTGATAGTTGTATTGGACCAATGGGTGTTT GTAGTCATATAGCTATTGCACCAAAATGTTTAGAATGCGCATTGGAACCATGTATTACAA CAGATAATTGTCAACCAGTTATTTGTGGTCCAGATGGACGTTGTATCCAAGAGACAATTG AAGATTTTTGTGATGATTATAATTATTGCACTGTTGATACATGCACAGGAGTAGGTTGTG AACATGCTTCAATTTCAGGTTGTCGTAATTGTACAAATGGAATTGGTTGTACAACACCAT CAGATGATGCATGTAATTTACAAGTATGTTCTGAAACTGGAGATAGTTGTCTTACAATGG TTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACTGGTATTT GTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACTA T----------TGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAA TTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGCGATTGTTGTC CAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCA CTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAG GTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAA GAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAAT GTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTA AAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCA CACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATT TCTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAAT TTAATATTACAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAACAA CTGCCCCATT
Length of connected seq.	1200
Full length Seq ID	CHF375E
Full length Seq.	>CHF375E.Seq ATTTTTGCTTCCAACAAGTTTGCTCTGCAACTGATGGAGATGTTTGTACAACAGTTCCAT TGAATTGTGATGATGGCTTACAGTGTACAGTTGATAGTTGTATTGGACCAATGGGTGTTT GTAGTCATATAGCTATTGCACCAAAATGTTTAGAATGCGCATTGGAACCATGTATTACAA CAGATAATTGTCAACCAGTTATTTGTGGTCCAGATGGACGTTGTATCCAAGAGACAATTG AAGATTTTTGTGATGATTATAATTATTGCACTGTTGATACATGCACAGGAGTAGGTTGTG AACATGCTTCAATTTCAGGTTGTCGTAATTGTACAAATGGAATTGGTTGTACAACACCAT CAGATGATGCATGTAATTTACAAGTATGTTCTGAAACTGGAGATAGTTGTCTTACAATGG TTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACTGGTATTT GTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACTA TCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGCGATTGTTGTCCAATTGGTCAAA AATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGTATTC CAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCATTACACAG AATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAAT GTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTT TAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATT TCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCAGTTTGCA AACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATTTCTTTTCTTTTT ATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAATTTAATATTACAA TATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAACAACTGCCCCATT
Length of full length seq.	1138

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas