NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF357
Library CH
(Link to library)
Clone ID CHF357
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15543-1
Original site URL
Representative seq. ID CHF357P
(Link to Original site)
Representative DNA sequence 
>CHF357 (CHF357Q) /CSM/CH/CHF3-C/CHF357Q.Seq.d/
GCTTAAGNGATAATAAAGTCAAAGAAAATAGAGAAAAATATGGAAGTAATACATTACCAC
CAGTANANATTGAATCATTTTTTAGTAAATTGATGGANAATTTTCAAGATCCATTGATTC
ATATTTTATGTGTANCATTAGNGATCACGGNGATCTTATCATTTGTAGGATATGCGGAAT
GGTTTGAGGGTGTTGGTATTGCATCANCAGTATTTTTANCAACATTTGTATCANCCTATA
GNGAATATAANAATGANAATTCATTTCAANAACTTCAANANAAAGCATCAANAGTGAAAT
GTANCGTTTTTAAAAATGGATCACACATTTCCNAAGTCTATGGATTCNATGTTGTAGTTG
GXXXXXXXXXXTGGTAGAACCATTTACAAATCCATTCAAAAGTTTATCGTTTTCCAATCT
ACAATCAATGTCGCCTCAACTCTTATCGTATTCTTGGGACCATTTATGGGCTTTGATTTC
CCGTTAACTTTAATTCAATTGTTATGGGTTAACTTGGTAATGGATACTTTGGCTGCTCTC
GCATTTGGTGGTGAACCAGCACTCACTCGTTACATGCAAGAGAAACCAATCAAAAGAGAT
CAATCCATTATCACCAGTAGAATGTGGGGTTCAATTTTAGGTGGAGGTCCTTTCATCTCT
GCAATGTCTATTCTTTTCCTTACCAATGACTATGTTGAAGCTTTCTTCACTCGTAATGGT
GAACCATATCAACCAGCTTTCTTGACTGCATTTTTTGCATTTTTCATTTTCCTCTCTGTC
ATCAATGCCTTTAACGTTCGTACTAGCCGTTTGAATCTCTTTGATCATTTGTTTGATAAT
AAAGGTTTCATTGTAGTTGTGTTTTTCATTTTCTTTGTTCAAATCGTTTTCACCTATATT
GGTGGTAAGATTCTCAGAACCGTTGGTCTCACTTCCAGTGAATGGGCTTTGGTTGTAGCA
ATGTCCTTCTCAGTAATACCTTTTGACCTCATTAGAAAGTTTGCCTTAAATTTATTTCTT
TTCAAATCAAAGAAAAATATCAATAAAACCGATTAATAAATTNAAAAAATTGTTTAAATA
AAT
sequence update 2002.10.25
Translated Amino Acid sequence 
LXDNKVKENREKYGSNTLPPVXIESFFSKLMXNFQDPLIHILCVXLXITXILSFVGYAEW
FEGVGIASXVFLXTFVSXYXEYXNXNSFQXLQXKASXVKCXVFKNGSHISXVYGFXVVV-
--

---GRTIYKSIQKFIVFQSTINVASTLIVFLGPFMGFDFPLTLIQLLWVNLVMDTLAALA
FGGEPALTRYMQEKPIKRDQSIITSRMWGSILGGGPFISAMSILFLTNDYVEAFFTRNGE
PYQPAFLTAFFAFFIFLSVINAFNVRTSRLNLFDHLFDNKGFIVVVFFIFFVQIVFTYIG
GKILRTVGLTSSEWALVVAMSFSVIPFDLIRKFALNLFLFKSKKNINKTD**ixkiv*in
Translated Amino Acid sequence (All Frames) 
Frame A:
a*xiikskkieknmevihyhqxxlnhflvn*wxifkih*fifyvxh*xsrxsyhl*dmrn
glrvlvlhxqyfxqhlyxpixnixmxihfxnfxxkhqx*nvxflkmdhtfpksmdsml*l
---

---w*nhlqihskvyrfpiynqcrlnsyrilgtiygl*fpvnfnsivmg*lgngyfgcsr
iww*tsthslharetnqkrsihyhq*nvgfnfrwrsfhlcnvysfpyq*lc*sflhs*w*
tistsfldcifcifhfplchqcl*rsy*pfesl*sfv***rfhcscvfhflcsnrfhlyw
w*dsqnrwshfq*mgfgcsnvllsntf*ph*kvclkfisfqikekyq*nrlinxknclnk

Frame B:
lkx**sqrk*rkiwk*yittsxx*iif**idgxfsrsidsyfmcxixdhgdliicricgm
v*gcwycixsifxnicixl*xi*x*xfisxtsxxsixsemxrf*kwithfxslwixccsw
---

---GRTIYKSIQKFIVFQSTINVASTLIVFLGPFMGFDFPLTLIQLLWVNLVMDTLAALA
FGGEPALTRYMQEKPIKRDQSIITSRMWGSILGGGPFISAMSILFLTNDYVEAFFTRNGE
PYQPAFLTAFFAFFIFLSVINAFNVRTSRLNLFDHLFDNKGFIVVVFFIFFVQIVFTYIG
GKILRTVGLTSSEWALVVAMSFSVIPFDLIRKFALNLFLFKSKKNINKTD**ixkiv*in

Frame C:
LXDNKVKENREKYGSNTLPPVXIESFFSKLMXNFQDPLIHILCVXLXITXILSFVGYAEW
FEGVGIASXVFLXTFVSXYXEYXNXNSFQXLQXKASXVKCXVFKNGSHISXVYGFXVVV-
--

---vepftnpfkslsfsnlqsmspqllsyswdhlwalisr*l*fncygltw*wilwllsh
lvvnqhslvtckrnqskeinplspvecgvqf*vevlsslqclffslpmtmlklsslvmvn
hinqls*lhflhfsfsslssmpltfvlav*isliicliikvsl*lcfsfslfksfspilv
vrfseplvslpvnglwl*qcpsq*ylltsleslp*iyffsnqrkisikpinkxkklfk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF357 (CHF357Q) /CSM/CH/CHF3-C/CHF357Q.Seq.d/                       1304   0.0
VHQ225 (VHQ225Q) /CSM/VH/VHQ2-B/VHQ225Q.Seq.d/                        747   0.0
VHB712 (VHB712Q) /CSM/VH/VHB7-A/VHB712Q.Seq.d/                        747   0.0
VHB581 (VHB581Q) /CSM/VH/VHB5-D/VHB581Q.Seq.d/                        747   0.0
VFJ405 (VFJ405Q) /CSM/VF/VFJ4-A/VFJ405Q.Seq.d/                        747   0.0
SHL543 (SHL543Q) /CSM/SH/SHL5-B/SHL543Q.Seq.d/                        747   0.0
SHL285 (SHL285Q) /CSM/SH/SHL2-D/SHL285Q.Seq.d/                        747   0.0
SHG541 (SHG541Q) /CSM/SH/SHG5-B/SHG541Q.Seq.d/                        747   0.0
SHG270 (SHG270Q) /CSM/SH/SHG2-C/SHG270Q.Seq.d/                        747   0.0
SHE352 (SHE352Q) /CSM/SH/SHE3-C/SHE352Q.Seq.d/                        747   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL403413|AL403413.1 T3 end of clone AT0AA008E05 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii.    56   0.001  1
AC079105|AC079105.1 Homo sapiens chromosome 8 clone RP11-3K9 map 8, LOW-PASS SEQUENCE SAMPLING.    36   0.12   5
AC120487|AC120487.4 Rattus norvegicus clone CH230-123F24, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    34   0.14   6
AC143337|AC143337.10 Medicago truncatula clone mth2-35d19, WORKING DRAFT SEQUENCE, 6 unordered pieces.    38   0.34   6
AC109206|AC109206.6 Mus musculus chromosome 9 clone RP23-142F22 map 9, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.    34   0.56   8
Y11606|Y11606.1 Pichia kluyveri mitochondrial DNA encoding DNA polymerase and RNA polymerase.    36   0.60   3
AC073105|AC073105.1 Homo sapiens chromosome 2 clone RP11-464P18, WORKING DRAFT SEQUENCE, 28 unordered pieces.    34   0.62   2
AC093085|AC093085.4 Homo sapiens BAC clone RP11-732M2 from 2, complete sequence.    34   0.64   2
AB041266|AB041266.1 Actinobacillus actinomycetemcomitans gene cluster for synthesis of serotype d-specific polysaccharide antigen, complete cds.    46   1.2    1
AL359707|AL359707.18 Human DNA sequence from clone RP11-251A15 on chromosome 10. Contains a pseudogene similar to novel protein KIAA0887, the TNKS2 gene for  TRF1-interacting ankyrin-related ADP-ribose polymerase 2 (tankyrase  2, TNKL, TANK2), the SRP9 gene for signal recognition particle 9kD,  ESTs, STSs, GSSs and a CpG island.    46   1.2    1
dna update 2004. 9.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000419_660(CP000419|pid:none) Streptococcus thermophilus LMD-9...   139   2e-31
CP000023_731(CP000023|pid:none) Streptococcus thermophilus LMG 1...   139   2e-31
CP000024_744(CP000024|pid:none) Streptococcus thermophilus CNRZ1...   138   3e-31
AY486142_1(AY486142|pid:none) Sterkiella histriomuscorum minichr...   101   4e-20
CP000393_4227(CP000393|pid:none) Trichodesmium erythraeum IMS101...   101   4e-20
CP001071_214(CP001071|pid:none) Akkermansia muciniphila ATCC BAA...   100   1e-19
CP000139_1262(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    98   5e-19
CP000806_148(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul...    96   3e-18
AY059633_1(AY059633|pid:none) Medicago truncatula type IIB calci...    95   4e-18
AM920433_57(AM920433|pid:none) Penicillium chrysogenum Wisconsin...    94   6e-18
protein update 2009. 3.31
PSORT 

 psg: 0.66  gvh: 0.70  alm: 0.17  top: 0.37  tms: 0.47  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 32.0 %: plasma membrane
	 20.0 %: mitochondrial
	  4.0 %: nuclear
	  4.0 %: Golgi

>> prediction for CHF357 is end
5' end seq. ID CHF357F
5' end seq. 
>CHF357F.Seq
GCTTAAGNGATAATAAAGTCAAAGAAAATAGAGAAAAATATGGAAGTAATACATTACCAC
CAGTANANATTGAATCATTTTTTAGTAAATTGATGGANAATTTTCAAGATCCATTGATTC
ATATTTTATGTGTANCATTAGNGATCACGGNGATCTTATCATTTGTAGGATATGCGGAAT
GGTTTGAGGGTGTTGGTATTGCATCANCAGTATTTTTANCAACATTTGTATCANCCTATA
GNGAATATAANAATGANAATTCATTTCAANAACTTCAANANAAAGCATCAANAGTGAAAT
GTANCGTTTTTAAAAATGGATCACACATTTCCNAAGTCTATGGATTCNATGTTGTAGTTG
GNNNNNNNNNN
Length of 5' end seq. 371
3' end seq. ID CHF357Z
3' end seq. 
>CHF357Z.Seq
NNNNNNNNNNTGGTAGAACCATTTACAAATCCATTCAAAAGTTTATCGTTTTCCAATCTA
CAATCAATGTCGCCTCAACTCTTATCGTATTCTTGGGACCATTTATGGGCTTTGATTTCC
CGTTAACTTTAATTCAATTGTTATGGGTTAACTTGGTAATGGATACTTTGGCTGCTCTCG
CATTTGGTGGTGAACCAGCACTCACTCGTTACATGCAAGAGAAACCAATCAAAAGAGATC
AATCCATTATCACCAGTAGAATGTGGGGTTCAATTTTAGGTGGAGGTCCTTTCATCTCTG
CAATGTCTATTCTTTTCCTTACCAATGACTATGTTGAAGCTTTCTTCACTCGTAATGGTG
AACCATATCAACCAGCTTTCTTGACTGCATTTTTTGCATTTTTCATTTTCCTCTCTGTCA
TCAATGCCTTTAACGTTCGTACTAGCCGTTTGAATCTCTTTGATCATTTGTTTGATAATA
AAGGTTTCATTGTAGTTGTGTTTTTCATTTTCTTTGTTCAAATCGTTTTCACCTATATTG
GTGGTAAGATTCTCAGAACCGTTGGTCTCACTTCCAGTGAATGGGCTTTGGTTGTAGCAA
TGTCCTTCTCAGTAATACCTTTTGACCTCATTAGAAAGTTTGCCTTAAATTTATTTCTTT
TCAAATCAAAGAAAAATATCAATAAAACCGATTAATAAATTNAAAAAATTGTTTAAATAA
AT
Length of 3' end seq. 722
Connected seq. ID CHF357P
Connected seq. 
>CHF357P.Seq
GCTTAAGNGATAATAAAGTCAAAGAAAATAGAGAAAAATATGGAAGTAATACATTACCAC
CAGTANANATTGAATCATTTTTTAGTAAATTGATGGANAATTTTCAAGATCCATTGATTC
ATATTTTATGTGTANCATTAGNGATCACGGNGATCTTATCATTTGTAGGATATGCGGAAT
GGTTTGAGGGTGTTGGTATTGCATCANCAGTATTTTTANCAACATTTGTATCANCCTATA
GNGAATATAANAATGANAATTCATTTCAANAACTTCAANANAAAGCATCAANAGTGAAAT
GTANCGTTTTTAAAAATGGATCACACATTTCCNAAGTCTATGGATTCNATGTTGTAGTTG
G----------TGGTAGAACCATTTACAAATCCATTCAAAAGTTTATCGTTTTCCAATCT
ACAATCAATGTCGCCTCAACTCTTATCGTATTCTTGGGACCATTTATGGGCTTTGATTTC
CCGTTAACTTTAATTCAATTGTTATGGGTTAACTTGGTAATGGATACTTTGGCTGCTCTC
GCATTTGGTGGTGAACCAGCACTCACTCGTTACATGCAAGAGAAACCAATCAAAAGAGAT
CAATCCATTATCACCAGTAGAATGTGGGGTTCAATTTTAGGTGGAGGTCCTTTCATCTCT
GCAATGTCTATTCTTTTCCTTACCAATGACTATGTTGAAGCTTTCTTCACTCGTAATGGT
GAACCATATCAACCAGCTTTCTTGACTGCATTTTTTGCATTTTTCATTTTCCTCTCTGTC
ATCAATGCCTTTAACGTTCGTACTAGCCGTTTGAATCTCTTTGATCATTTGTTTGATAAT
AAAGGTTTCATTGTAGTTGTGTTTTTCATTTTCTTTGTTCAAATCGTTTTCACCTATATT
GGTGGTAAGATTCTCAGAACCGTTGGTCTCACTTCCAGTGAATGGGCTTTGGTTGTAGCA
ATGTCCTTCTCAGTAATACCTTTTGACCTCATTAGAAAGTTTGCCTTAAATTTATTTCTT
TTCAAATCAAAGAAAAATATCAATAAAACCGATTAATAAATTNAAAAAATTGTTTAAATA
AAT
Length of connected seq. 1073
Full length Seq ID -
Full length Seq. -
Length of full length seq. -